polymapR: Linkage Analysis in Outcrossing Polyploids

Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a preprint manuscript of Bourke et al. (2017) <doi:10.1101/228817>.

Version: 1.0.11
Depends: R (≥ 2.10)
Imports: igraph, doParallel, foreach, knitr, Rglpk, Matrix, combinat, RColorBrewer, reshape2, NMF, MDSMap
Suggests: rmarkdown, Hmisc, LPmerge
Published: 2017-12-05
Author: Peter Bourke [aut, cre], Geert van Geest [aut]
Maintainer: Peter Bourke <pbourkey at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: no
CRAN checks: polymapR results

Downloads:

Reference manual: polymapR.pdf
Vignettes: Basic functionality
Package source: polymapR_1.0.11.tar.gz
Windows binaries: r-devel: polymapR_1.0.11.zip, r-release: polymapR_1.0.11.zip, r-oldrel: polymapR_1.0.11.zip
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: polymapR_1.0.11.tgz

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