effectR: Predicts Oomycete Effectors

Predicts cytoplasmic effector proteins using genomic data by searching for motifs of interest using regular expression searches and hidden Markov models (HMM) based in Haas et al. (2009) <doi:10.1038/nature08358>.

Version: 1.0.0
Depends: R (≥ 3.4.0)
Imports: seqinr (≥ 3.3.6), ggplot2 (≥ 2.2.1), shiny, reshape2, utils, viridis
Suggests: knitr, rmarkdown, testthat
Published: 2018-01-17
Author: Javier Tabima [aut, cre], Niklaus J. Grunwald [ths]
Maintainer: Javier Tabima <tabimaj at oregonstate.edu>
License: GPL-2 | GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: effectR results

Downloads:

Reference manual: effectR.pdf
Vignettes: effectR: An R package to call oomycete effectors
Package source: effectR_1.0.0.tar.gz
Windows binaries: r-devel: effectR_1.0.0.zip, r-release: effectR_1.0.0.zip, r-oldrel: not available
OS X El Capitan binaries: r-release: effectR_1.0.0.tgz
OS X Mavericks binaries: r-oldrel: not available

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