cRegulome: Obtain and Visualize Regulome-Gene Expression Correlations in Cancer

Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) <doi:10.1186/gb-2011-12-8-r83> and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.

Version: 0.1.1
Depends: R (≥ 2.10.0)
Imports: DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, magrittr, dplyr, ggplot2, ggridges, tidyr, reshape2, purrr, grid, R.utils, AnnotationDbi,, clusterProfiler
Suggests: knitr, rmarkdown, testthat, covr, dbplyr, igraph, readxl
Published: 2018-03-17
Author: Mahmoud Ahmed [aut, cre]
Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at>
License: GPL-3
NeedsCompilation: no
Materials: README NEWS
CRAN checks: cRegulome results


Reference manual: cRegulome.pdf
Vignettes: Case Study
Using cRegulome
Package source: cRegulome_0.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: cRegulome_0.1.0.tgz
OS X Mavericks binaries: r-oldrel: not available
Old sources: cRegulome archive


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