Available CRAN Packages By Date of Publication

Date Package Title
2014-09-20 Density.T.HoldOut Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation
2014-09-20 mp Multidimensional Projection Techniques
2014-09-20 MST Multivariate Survival Trees
2014-09-20 OrdLogReg Ordinal Logic Regression
2014-09-20 REDCapR Interaction between R and REDCap
2014-09-19 allelematch Identifying unique multilocus genotypes where genotyping error and missing data may be present
2014-09-19 beanplot Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
2014-09-19 BEANSP Bayesian Estimate of Age-specific Nest Survival Probabilities
2014-09-19 BOIN Bayesian Optimal Interval Design for Phase I Clinical Trials
2014-09-19 bReeze Functions for wind resource assessment
2014-09-19 comclim Community climate statistics
2014-09-19 confidence Confidence Estimation of Environmental State Classifications
2014-09-19 edgeRun More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data
2014-09-19 gdsfmt R Interface to CoreArray Genomic Data Structure (GDS) files
2014-09-19 gmailr Access the Gmail RESTful API from R
2014-09-19 iki.dataclim Consistency, Homogeneity and Summary Statistics of Climatological Data
2014-09-19 intervals Tools for working with points and intervals
2014-09-19 LogicForest Logic Forest
2014-09-19 multipleNCC Weighted Cox-regression for nested case-control data
2014-09-19 nat.nblast NeuroAnatomy Toolbox (nat) Extension for Assessing Neuron Similarity and Clustering
2014-09-19 nlWaldTest Wald Test of nonlinear restrictions for regression parameters
2014-09-19 opentraj Tools for Creating and Analysing Air Trajectory Data
2014-09-19 pcaPP Robust PCA by Projection Pursuit
2014-09-19 randomUniformForest Random Uniform Forests for Classification and Regression
2014-09-19 RcmdrPlugin.NMBU R Commander Plug-In for Statistics at NMBU
2014-09-19 Rhpc An R package for High-Performance Computing
2014-09-19 RidgeFusion R Package for Ridge Fusion in Statistical Learning
2014-09-19 RMOA Connect R with MOA for Massive Online Analysis
2014-09-19 rms Regression Modeling Strategies
2014-09-19 RUnit R Unit test framework
2014-09-19 RVAideMemoire Diverse basic statistical and graphical functions
2014-09-19 sdmvspecies Create virtual species for species distribution modelling
2014-09-19 SmoothHazard Fitting illness-death model for interval-censored data
2014-09-19 spatialnbda Performs spatial NBDA in a Bayesian context
2014-09-19 spdep Spatial dependence: weighting schemes, statistics and models
2014-09-19 spMC Continuous Lag Spatial Markov Chains
2014-09-18 adaptDA Adaptive Mixture Discriminant Analysis
2014-09-18 aRxiv Interface to the arXiv API
2014-09-18 bbo Biogeography-Based Optimization
2014-09-18 betategarch Simulation, estimation and forecasting of Beta-Skew-t-EGARCH models
2014-09-18 boral Bayesian Ordination and Regression AnaLysis
2014-09-18 clhs Conditioned Latin Hypercube Sampling
2014-09-18 corHMM Analysis of binary character evolution
2014-09-18 DirichletReg Dirichlet Regression in R
2014-09-18 geostatsp Geostatistics using SpatialPoints and rasters
2014-09-18 gfcanalysis Tools for working with Hansen et al. 2013 Global Forest Change dataset
2014-09-18 gplots Various R programming tools for plotting data
2014-09-18 ivbma Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors
2014-09-18 mapmisc Utilities for producing maps
2014-09-18 modTempEff Modelling temperature effects using time series data
2014-09-18 paleotree Paleontological and Phylogenetic Analyses of Evolution
2014-09-18 powerr Analysis of Power System
2014-09-18 protViz Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
2014-09-18 refGenome Gene And Splice Site Annotation Using Annotation Data From Ensembl And UCSC Genome Browsers
2014-09-18 repmis A collection of miscellaneous tools for reproducible research with R
2014-09-18 rgdal Bindings for the Geospatial Data Abstraction Library
2014-09-18 Rtsne T-distributed Stochastic Neighbor Embedding using Barnes-Hut implementation
2014-09-18 Taxonstand Taxonomic standardization of plant species names
2014-09-18 TreeSim Simulating trees under the birth-death model
2014-09-18 uskewFactors Model-based clustering via mixtures of unrestricted skew-t factor analyzer models
2014-09-17 coin Conditional Inference Procedures in a Permutation Test Framework
2014-09-17 dnet Integrative analysis of omics data in terms of network, evolution and ontology
2014-09-17 EntropyEstimation Estimation of Entropy and Related Quantities
2014-09-17 fCopulae Rmetrics - Bivariate Dependence Structures with Copulae
2014-09-17 gamlss Generalised Additive Models for Location Scale and Shape
2014-09-17 gamlss.dist Distributions to be used for GAMLSS modelling
2014-09-17 party A Laboratory for Recursive Partytioning
2014-09-17 qgtools Tools for Quantitative Genetics Data Analyses
2014-09-17 RadioSonde Tools for plotting skew-T diagrams and wind profiles
2014-09-17 rmarkdown Dynamic Documents for R
2014-09-17 RMOAjars External jars required for package RMOA
2014-09-17 simsalapar Tools for Simulation Studies in Parallel with R
2014-09-17 yuima The YUIMA Project package for SDEs
2014-09-16 berryFunctions function collection related to hydrology, zooming and shapefiles
2014-09-16 compute.es Compute Effect Sizes
2014-09-16 Distance A simple way to fit detection functions to distance sampling data and calculate abundance/density for biological populations
2014-09-16 dlm Bayesian and Likelihood Analysis of Dynamic Linear Models
2014-09-16 dsm Density surface modelling of distance sampling data
2014-09-16 fRegression Rmetrics - Regression Based Decision and Prediction
2014-09-16 gamlr Gamma Lasso Regression
2014-09-16 GlobalOptions Generate functions to get or set global options
2014-09-16 GuardianR The Guardian API Wrapper
2014-09-16 hypergea Hypergeometric tests
2014-09-16 kselection Selection of k in k-means clustering
2014-09-16 LiblineaR Linear Predictive Models Based On The liblinear C/C++ Library
2014-09-16 m4fe Models for Financial Economics
2014-09-16 MatchingFrontier Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference
2014-09-16 mclust Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation
2014-09-16 miniCRAN Tools to create an internally consistent, mini version of CRAN with selected packages only
2014-09-16 mixlm Mixed model ANOVA and statistics for education
2014-09-16 mrds Mark-Recapture Distance Sampling (mrds)
2014-09-16 nat.templatebrains NeuroAnatomy Toolbox (nat) Extension for Handling Template Brains
2014-09-16 ncdf4 Interface to Unidata netCDF (version 4 or earlier) format data files
2014-09-16 nontarget Detecting, Combining and Filtering Isotope, Adduct and Homologue Series Relations in High-Resolution Mass Spectrometry (HRMS) Data
2014-09-16 PerformanceAnalytics Econometric tools for performance and risk analysis
2014-09-16 PivotalR R front-end to PostgreSQL and Pivotal (Greenplum) database, wrapper for MADlib
2014-09-16 polidata Political Data Interface in R
2014-09-16 qat Quality Assurance Toolkit
2014-09-16 redcapAPI R interface to REDCap
2014-09-16 smoother Smoother
2014-09-16 SSDforR SSD for R to analyze single system data
2014-09-16 tab Functions for Creating Summary Tables for Statistical Reports
2014-09-16 UPMASK Unsupervised Photometric Membership Assignment in Stellar Clusters
2014-09-15 binequality Methods for Analyzing Binned Income Data
2014-09-15 demography Forecasting mortality, fertility, migration and population data
2014-09-15 fmsb Functions for medical statistics book with some demographic data
2014-09-15 genlasso Path algorithm for generalized lasso problems
2014-09-15 hot.deck Multiple Hot-deck Imputation
2014-09-15 investr Inverse Estimation/Calibration Functions
2014-09-15 MissingDataGUI A GUI for Missing Data Exploration
2014-09-15 netweavers NetWeAvers: Weighted Averages for Networks
2014-09-15 nonnest2 Tests of non-nested models
2014-09-15 PerMallows Permutations and Mallows distributions
2014-09-15 propOverlap Feature (gene) selection based on the Proportional Overlapping Scores
2014-09-15 qpcR Modelling and analysis of real-time PCR data
2014-09-15 rredis Redis client for R
2014-09-15 Ryacas R interface to the yacas computer algebra system
2014-09-15 SOR Estimation using Sequential Offsetted Regression
2014-09-14 agop Aggregation Operators and Preordered Sets
2014-09-14 DLMtool Data-Limited Methods Toolkit
2014-09-14 EDISON Network Reconstruction and Changepoint Detection
2014-09-14 geoR Analysis of geostatistical data
2014-09-14 KernSmooth Functions for kernel smoothing for Wand & Jones (1995)
2014-09-14 multigroup methods for multigroup data analysis
2014-09-14 RcmdrPlugin.coin Rcmdr Coin Plug-In
2014-09-14 RH2 DBI/RJDBC interface to h2 Database
2014-09-14 RPMM Recursively Partitioned Mixture Model
2014-09-13 geepack Generalized Estimating Equation Package
2014-09-13 HH Statistical Analysis and Data Display: Heiberger and Holland
2014-09-13 iBATCGH Integrative Bayesian Analysis of Transcriptomic and CGH data
2014-09-13 Lahman Sean Lahman's Baseball Database
2014-09-13 ONETr Efficient authenticated interaction with the O*NET API
2014-09-13 phyloland Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework
2014-09-13 recosystem Recommender System using Matrix Factorization
2014-09-13 referenceIntervals Reference Intervals
2014-09-13 seedy Simulation of Evolutionary and Epidemiological Dynamics
2014-09-12 CorReg Linear regression based on linear structure between covariates
2014-09-12 Hmisc Harrell Miscellaneous
2014-09-12 leafletR Interactive web-maps based on the Leaflet JavaScript library
2014-09-12 meta Meta-Analysis with R
2014-09-12 Mobilize Mobilize plots and functions
2014-09-12 nettools A Network Comparison Framework
2014-09-12 partykit A Toolkit for Recursive Partytioning
2014-09-12 PepPrep Insilico peptide mutation, digestion and homologous comparison
2014-09-12 PReMiuM Dirichlet Process Bayesian Clustering, Profile Regression
2014-09-12 RGraphics Data and Functions from the book R Graphics, Second Edition
2014-09-12 RhpcBLASctl Control the number of threads on BLAS for R
2014-09-12 seewave Sound analysis and synthesis
2014-09-12 SimComp Simultaneous Comparisons for Multiple Endpoints
2014-09-12 spatsurv Bayesian spatial survival analysis with parametric proportional hazards models
2014-09-12 SpecsVerification Forecast verification routines for the SPECS FP7 project
2014-09-12 treatSens Sensitivity analysis for causal inference
2014-09-12 unittest TAP-compliant unit testing
2014-09-12 WhopGenome High-speed processing of whole-genome VCF-format variation data, FASTA-format sequence data and several alignments formats
2014-09-12 xtable Export tables to LaTeX or HTML
2014-09-12 zCompositions Imputation of Zeros and Nondetects in Compositional Data Sets
2014-09-11 DatABEL file-based access to large matrices stored on HDD in binary format
2014-09-11 FRESA.CAD FeatuRE Selection Algorithms for Computer Aided Diagnosis
2014-09-11 funFEM Clustering in the Discriminative Functional Subspace
2014-09-11 gapmap Functions for Drawing Gapped Cluster Heatmap with ggplot2
2014-09-11 glmmLasso Variable selection for generalized linear mixed models by L1-penalized estimation
2014-09-11 intsvy International Assessment Data Manager
2014-09-11 knnIndep Independence tests and benchmarks
2014-09-11 lcmm Estimation of Extended Mixed Models Using Latent Classes and Latent Processes
2014-09-11 lefse Phylogenetic and Functional Analyses for Ecology
2014-09-11 lmms Linear mixed effect model splines for modelling and analysis of time course data
2014-09-11 OjaNP Multivariate Methods Based on the Oja Median and Related Concepts
2014-09-11 pbkrtest Parametric bootstrap and Kenward Roger based methods for mixed model comparison
2014-09-11 pkgKitten Create Simple Packages Which Do Not Upset R CMD check
2014-09-11 RankResponse Ranking Responses in a Single Response Question or a Multiple Response Question
2014-09-11 rChoiceDialogs rChoiceDialogs collection
2014-09-11 rplexos Read and analyze PLEXOS solutions from R
2014-09-11 rsubgroup Subgroup Discovery and Analytics
2014-09-11 snpEnrichment SNPs enrichment analysis
2014-09-11 VennDiagram Generate high-resolution Venn and Euler plots
2014-09-10 caTools Tools: moving window statistics, GIF, Base64, ROC AUC, etc
2014-09-10 catR Procedures to generate IRT adaptive tests (CAT)
2014-09-10 cgam Constrained Generalized Additive Model
2014-09-10 cmvnorm Complex multivariate Gaussian distribution
2014-09-10 dismo Species distribution modeling
2014-09-10 dunn.test Dunn's test of multiple comparisons using rank sums
2014-09-10 eegkit Toolkit for electroencephalography data
2014-09-10 eegkitdata Data for package eegkit
2014-09-10 ForwardSearch Forward Search using asymptotic theory
2014-09-10 GGMselect Gaussian Graphs Models selection
2014-09-10 hwriter HTML Writer - Outputs R objects in HTML format
2014-09-10 isotone Active set and generalized PAVA for isotone optimization
2014-09-10 mmcm Modified Maximum Contrast Method
2014-09-10 mnlogit Multinomial Logit Model
2014-09-10 Ohmage R Client for Ohmage 2 server
2014-09-10 paleobioDB paleobioDB: a package for downloading, visualizing and processing data from Paleobiology Database
2014-09-10 RcmdrPlugin.IPSUR An IPSUR Plugin for the R Commander
2014-09-10 RDML Importing real-time thermo cycler (qPCR) data from RDML format files
2014-09-10 RImpala R and Impala
2014-09-10 saery Small Area Estimation for Rao and Yu Model
2014-09-10 segmented Segmented relationships in regression models with breakpoints/changepoints estimation
2014-09-10 Sim.DiffProc Simulation of Diffusion Processes
2014-09-10 sjPlot sjPlot - data visualization for statistics in social science
2014-09-10 spaMM Mixed Models, Particularly Spatial GLMMs
2014-09-10 synbreed Framework for the analysis of genomic prediction data using R
2014-09-10 vcrpart Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models
2014-09-09 BGPhazard Markov beta and gamma processes for modeling hazard rates
2014-09-09 BMA Bayesian Model Averaging
2014-09-09 bpkde Back-Projected Kernel Density Estimation
2014-09-09 CircE Circumplex models Estimation
2014-09-09 couchDB Connect and work with couchDB databases
2014-09-09 doBy doBy - Groupwise summary statistics, LSmeans, general linear contrasts, various utilities
2014-09-09 domino Domino Data Lab R console bindings
2014-09-09 fcros FCROS for detecting differentially expressed genes
2014-09-09 fpc Flexible procedures for clustering
2014-09-09 geosphere Spherical Trigonometry
2014-09-09 globalOptTests Objective functions for benchmarking the performance of global optimization algorithms
2014-09-09 micropan Microbial Pan-genome Analysis
2014-09-09 ngspatial Fitting the centered autologistic and sparse spatial generalized linear mixed models for areal data
2014-09-09 spam SPArse Matrix
2014-09-09 taxize Taxonomic information from around the web
2014-09-09 TripleR Social Relation Model (SRM) analyses for single or multiple round-robin groups
2014-09-08 accrued Visualization tools for partially accruing data
2014-09-08 anacor Simple and Canonical Correspondence Analysis
2014-09-08 astro Astronomy Functions, Tools and Routines
2014-09-08 easyanova Analysis of variance and other important complementary analyzes
2014-09-08 emulator Bayesian emulation of computer programs
2014-09-08 FastPCS R package to compute the FastPCS outlyingness index
2014-09-08 FastRCS R package to compute the FastRCS outlyingness index
2014-09-08 funHDDC Model-based clustering in group-specific functional subspaces
2014-09-08 HDPenReg High-Dimensional Penalized Regression
2014-09-08 hiddenf Conduct the F test for hidden additivity in two-factor experiments
2014-09-08 htmltools Tools for HTML
2014-09-08 ibd INCOMPLETE BLOCK DESIGNS
2014-09-08 LinRegInteractive Interactive Interpretation of Linear Regression Models
2014-09-08 lunar Lunar Phase & Distance, Seasons and Other Environmental Factors
2014-09-08 minque An R Package for Linear Mixed Model Analyses
2014-09-08 MODISTools MODIS Subsetting Tools
2014-09-08 MTurkR R Client for the MTurk Requester API
2014-09-08 operators Additional binary operators for the R language
2014-09-08 RcmdrPlugin.EBM Rcmdr Evidence Based Medicine Plug-In package
2014-09-08 rgl 3D visualization device system (OpenGL)
2014-09-08 slackr Send messages, images, R objects and files to Slack.com channels/users
2014-09-08 SNFtool Similarity Network Fusion
2014-09-08 TAM Test Analysis Modules
2014-09-08 tlm Effects under Linear, Logistic and Poisson Regression Models with Transformed Variables
2014-09-07 bionetdata Biological and chemical data networks
2014-09-07 copCAR Fitting the copCAR regression model for discrete areal data
2014-09-07 evmix Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation
2014-09-07 extraTrees Extremely Randomized Trees (ExtraTrees) method for classification and regression
2014-09-07 GUILDS Implementation of sampling formulas for the unified neutral model of biodiversity and biogeography, with or without guild structure
2014-09-07 JAGUAR Joint Analysis of Genotype and Group-specific Variability Using a Novel Score Test Approach to Map eQTL
2014-09-07 OpenRepGrid Tools to analyse repertory grid data
2014-09-07 PerfMeas PerfMeas: Performance Measures for ranking and classification tasks
2014-09-07 randomLCA Random Effects Latent Class Analysis
2014-09-07 rattle Graphical user interface for data mining in R
2014-09-07 Rsomoclu R package for somoclu
2014-09-07 rucm Implementation of Unobserved Components Model (UCM) in R
2014-09-07 xgboost eXtreme Gradient Boosting
2014-09-06 asbio A collection of statistical tools for biologists
2014-09-06 eggCounts Hierarchical modelling of faecal egg counts
2014-09-06 fMultivar Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
2014-09-06 GDAtools A toolbox for the analysis of categorical data in social sciences, and especially Geometric Data Analysis
2014-09-06 logcondens Estimate a Log-Concave Probability Density from iid Observations
2014-09-06 multiwayvcov Multi-way standard error clustering
2014-09-06 NbClust NbClust package for determining the best number of clusters
2014-09-06 OrdFacReg Least Squares, Logistic, and Cox-Regression with Ordered Predictors
2014-09-06 pyramid Functions to draw population pyramid
2014-09-06 R2HTML HTML exportation for R objects
2014-09-06 raster raster: Geographic data analysis and modeling
2014-09-06 RcmdrPlugin.temis Graphical Integrated Text Mining Solution
2014-09-06 selectMeta Estimation of Weight Functions in Meta Analysis
2014-09-06 sweidnumbr Handling of Swedish Identity Numbers
2014-09-06 sweSCB An R interface to the web API of Statistics Sweden
2014-09-06 trotter Pseudo-Vectors Containing All Permutations and Combinations of Objects Taken from a Vector
2014-09-05 bartMachine Bayesian Additive Regression Trees
2014-09-05 caseMatch Identify similar cases for qualitative case studies
2014-09-05 classyfire Robust multivariate classification using highly optimised SVM ensembles
2014-09-05 copula Multivariate Dependence with Copulas
2014-09-05 Crossover Crossover Designs
2014-09-05 fICA Classic, reloaded and adaptive FastICA algorithms
2014-09-05 GxM Maximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models
2014-09-05 jsonlite A smarter JSON encoder/decoder for R
2014-09-05 pec Prediction Error Curves for Survival Models
2014-09-05 powerGWASinteraction Power Calculations for GxE and GxG Interactions for GWAS
2014-09-05 preseqR Predicting Species Accumulation
2014-09-05 readbitmap Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG)
2014-09-05 REBayes Empirical Bayes Estimation and Inference in R
2014-09-05 rebmix The Rebmix Package
2014-09-05 REPPlab R interface to EPP-lab, a Java program for exploratory projection pursuit
2014-09-05 Rmpfr R MPFR - Multiple Precision Floating-Point Reliable
2014-09-05 structSSI Multiple Testing for Hypotheses with Hierarchical or Group Structure
2014-09-04 BCA Business and Customer Analytics
2014-09-04 cluster Cluster Analysis Extended Rousseeuw et al
2014-09-04 ClustVarLV Clustering of variables around Latent Variables
2014-09-04 cooptrees Cooperative aspects of optimal trees in weighted graphs
2014-09-04 CopulaRegression Bivariate Copula Based Regression Models
2014-09-04 Cprob Conditional probability function of a competing event
2014-09-04 Ecdat Data sets for econometrics
2014-09-04 haplo.stats Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
2014-09-04 helloJavaWorld Hello Java World
2014-09-04 idr Irreproducible discovery rate
2014-09-04 insuranceData A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance
2014-09-04 kmi Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting
2014-09-04 lmSupport Support for Linear Models
2014-09-04 MCDA MCDA
2014-09-04 miscset Miscellaneous Tools Set
2014-09-04 mpcv Multivariate Process Capability Vector
2014-09-04 MRCV Methods for Analyzing Multiple Response Categorical Variables (MRCVs)
2014-09-04 NPBayesImpute Non-parametric Bayesian Multiple Imputation for Categorical Data
2014-09-04 parcor Regularized estimation of partial correlation matrices
2014-09-04 plsdof Degrees of Freedom and Statistical Inference for Partial Least Squares Regression
2014-09-04 PP Person Parameter estimation
2014-09-04 ppls Penalized Partial Least Squares
2014-09-04 pqantimalarials web tool for estimating under-five deaths caused by poor-quality antimalarials in sub-Saharan Africa
2014-09-04 pxweb R interface to the PX-Web/PC-Axis API
2014-09-04 Rcmdr R Commander
2014-09-04 RcmdrMisc R Commander Miscellaneous Functions
2014-09-04 RcmdrPlugin.BCA Rcmdr Plug-In for Business and Customer Analytics
2014-09-04 rdrobust Robust data-driven statistical inference in Regression-Discontinuity designs
2014-09-04 rpf Response Probability Functions
2014-09-04 sanon Stratified Analysis with Nonparametric covariable adjustment
2014-09-04 SDaA Sampling: Design and Analysis
2014-09-04 sparseSEM Sparse-aware Maximum Likelihood for Structural Equation Models
2014-09-04 subrank Computes copula using ranks and subsampling
2014-09-03 checkmate Fast and versatile argument checks
2014-09-03 coreTDT TDT for compound heterozygous and recessive models
2014-09-03 DBI R Database Interface
2014-09-03 DNAtools Tools for analysing forensic genetic DNA data
2014-09-03 docopt docopt, command-line interface specification language
2014-09-03 GPfit Gaussian Processes Modeling
2014-09-03 jaatha A Fast Parameter Estimation Method for Evolutionary Biology
2014-09-03 jSonarR jSonar Analytics Platform API for R
2014-09-03 laGP Local Approximate Gaussian Process Regression
2014-09-03 logitchoice Fitting l2-regularized logit choice models via generalized gradient descent
2014-09-03 mixAK Multivariate normal mixture models and mixtures of generalized linear mixed models including model based clustering
2014-09-03 MPV Data Sets from Montgomery, Peck and Vining's Book
2014-09-03 MSIseq Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
2014-09-03 nabor Wraps libnabo, a fast K Nearest Neighbour library for low dimensions
2014-09-03 NCmisc Miscellaneous general purpose functions
2014-09-03 packrat A dependency management system for projects and their R package dependencies
2014-09-03 predictmeans Calculate Predicted Means for Linear Models
2014-09-03 stylo Functions for a variety of stylometric analyses
2014-09-03 tolerance Functions for calculating tolerance intervals
2014-09-03 upclass Updated Classification Methods using Unlabeled Data
2014-09-03 UsingR Data sets, etc. for the text "Using R for Introductory Statistics", second edition
2014-09-03 wgaim Whole Genome Average Interval Mapping for QTL detection using mixed models
2014-09-02 ds Descriptive Statistics
2014-09-02 easingr Fetch and plot credit easing policy tool data
2014-09-02 enviPick Peak picking for high resolution mass spectrometry data
2014-09-02 exactmeta Exact fixed effect meta analysis
2014-09-02 Frames2 Estimation in dual frame surveys
2014-09-02 HiClimR Hierarchical Climate Regionalization: An Improved Hierarchical Clustering in R for Climate Regionalization
2014-09-02 httr Tools for working with URLs and HTTP
2014-09-02 ica Independent Component Analysis
2014-09-02 mht Multiple Hypotheses Testing For Variable Selection
2014-09-02 nor1mix Normal (1-d) Mixture Models (S3 Classes and Methods)
2014-09-02 optrees Optimal Trees in Weighted Graphs
2014-09-02 prodlim Product-limit estimation. Kaplan-Meier and Aalen-Johansson method for censored event history (survival) analysis
2014-09-02 rappdirs Application directories: determine where to save data, caches and logs
2014-09-02 rcbalance Large, sparse optimal matching with refined covariate balance
2014-09-02 R.devices Unified handling of graphics devices
2014-09-02 rNOMADS An interface to the NOAA Operational Model Archive and Distribution System
2014-09-02 roxygen2 In-source documentation for R
2014-09-02 rpg Easy interface to advanced PostgreSQL features
2014-09-02 SCRT Single-Case Randomization Tests
2014-09-02 SCVA Single-Case Visual Analysis
2014-09-02 sgr Sample Generation by Replacement
2014-09-02 StereoMorph Stereo Camera Calibration and Reconstruction
2014-09-01 agricolae Statistical Procedures for Agricultural Research
2014-09-01 chebpol Multivariate Chebyshev interpolation
2014-09-01 circlize Circular visualization in R
2014-09-01 descomponer Seasonal adjustment by frequency analysis
2014-09-01 e1071 Misc Functions of the Department of Statistics (e1071), TU Wien
2014-09-01 FADA Variable selection for supervised classification in high dimension
2014-09-01 freqweights Working with frequency tables
2014-09-01 geoBayes Analysis of geostatistical data using Bayes and empirical Bayes methods
2014-09-01 GGIR GGIR
2014-09-01 heavy Package for robust estimation using heavy-tailed distributions
2014-09-01 lgarch Simulation and estimation of log-GARCH models
2014-09-01 mixOmics Omics Data Integration Project
2014-09-01 OpasnetUtils Utility functions for dealing with data in Opasnet (www.opasnet.org) environment
2014-09-01 pdR panel data regression
2014-09-01 RankAggreg Weighted rank aggregation
2014-09-01 Rbitcoin R & bitcoin integration
2014-09-01 RCEIM RCEIM - R Cross Entropy Inspired Method for Optimization
2014-09-01 reader A suite of functions to flexibly read data from files
2014-09-01 RGA A Google Analytics API client for R
2014-09-01 rsdmx Tools for reading SDMX data and metadata
2014-09-01 StAMPP Statistical Analysis of Mixed Ploidy Populations
2014-09-01 Tampo Tools for the Analysis of Microchemical Profiles from Otoliths
2014-09-01 traitr An interface for creating GUIs modeled in part after traits UI module for python
2014-09-01 wordnet WordNet Interface
2014-08-31 CDM Cognitive Diagnosis Modeling
2014-08-31 chemosensors A tool for the design of synthetic experiments in machine olfaction
2014-08-31 chords Estimation in respondent driven samples
2014-08-31 lbfgs Limited-memory BFGS Optimization
2014-08-31 ngramr Retrieve and plot Google n-gram data
2014-08-31 pmg Poor Man's GUI
2014-08-31 rcdk rcdk - Interface to the CDK Libraries
2014-08-31 rcdklibs rcdklib - CDK libraries packaged for R
2014-08-31 RNetCDF R Interface to NetCDF Datasets
2014-08-30 apc Age-period-cohort analysis
2014-08-30 archivist Tools for storing, restoring and searching for R objects
2014-08-30 EpiModel Mathematical Modeling of Infectious Disease
2014-08-30 frailtypack General Frailty models: shared, joint and nested frailty models with prediction
2014-08-30 jvmr Integration of R, Java, and Scala
2014-08-30 mcIRT IRT models for multiple choice items (mcIRT)
2014-08-30 nsRFA Non-supervised Regional Frequency Analysis
2014-08-30 parsedate Recognize and parse dates in various formats, including all ISO 8601 formats
2014-08-30 Peptides Calculate indices and theoretical physicochemical properties of peptides and protein sequences
2014-08-30 PopGenome An Efficient Swiss Army Knife for Population Genomic Analyses
2014-08-30 RSiteCatalyst R Client for Adobe Analytics API v1.4
2014-08-30 sirt Supplementary Item Response Theory Models
2014-08-30 survivalMPL Penalised Maximum Likelihood for Survival Analysis Models
2014-08-30 TDMR Tuned Data Mining in R
2014-08-29 analogue Analogue and weighted averaging methods for palaeoecology
2014-08-29 BayesFactor Computation of Bayes factors for common designs
2014-08-29 BH Boost C++ header files
2014-08-29 BIOM.utils Utilities for the BIOM (Biological Observation Matrix) Format
2014-08-29 birk MA Birk functions
2014-08-29 compendiumdb Tools for Storage and Retrieval of Gene Expession Data
2014-08-29 corrgram Plot a correlogram
2014-08-29 decompr Export Decomposition (Wang-Wei-Zhu and source)
2014-08-29 Eplot Plotting longitudinal series
2014-08-29 FreeSortR Free Sorting data analysis
2014-08-29 heatmap3 A improved heatmap package
2014-08-29 icamix Estimation of ICA Mixture Models
2014-08-29 iosmooth Functions for smoothing with infinite order flat-top kernels
2014-08-29 lakemorpho Lake morphometry in R
2014-08-29 mgcv Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation
2014-08-29 MGSDA Multi-Group Sparse Discriminant Analysis
2014-08-29 mme Multinomial Mixed Effects Models
2014-08-29 psychotools Infrastructure for Psychometric Modeling
2014-08-29 psychotree Recursive Partitioning Based on Psychometric Models
2014-08-29 raincpc Obtain and Analyze Rainfall Data from the Climate Prediction Center
2014-08-29 Rcapture Loglinear Models for Capture-Recapture Experiments
2014-08-29 RcmdrPlugin.FactoMineR Graphical User Interface for FactoMineR
2014-08-29 riverplot Sankey or ribbon plots
2014-08-29 sns Stochastic Newton Sampler (SNS)
2014-08-29 SQUAREM Squared extrapolation methods for accelerating fixed-point iterations
2014-08-29 ttScreening Genome-wide DNA methylation sites screening by use of training and testing samples
2014-08-29 turboEM A Suite of Convergence Acceleration Schemes for EM, MM and other fixed-point algorithms
2014-08-29 vows Voxelwise semiparametrics
2014-08-28 Bergm Bayesian analysis for exponential random graph models
2014-08-28 bfast Breaks For Additive Season and Trend (BFAST)
2014-08-28 BioStatR Initiation à la Statistique avec R
2014-08-28 bvarsv Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters
2014-08-28 cgAUC Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it
2014-08-28 cheddar Analysis and visualisation of ecological communities
2014-08-28 compareGroups Descriptive analysis by groups
2014-08-28 effsize Efficient effect size computation
2014-08-28 FactoMineR Multivariate Exploratory Data Analysis and Data Mining with R
2014-08-28 fastR Data sets and utilities for Foundations and Applications of Statistics by R Pruim
2014-08-28 fscaret Automated caret feature selection
2014-08-28 georob Robust Geostatistical Analysis of Spatial Data
2014-08-28 gWidgets gWidgets API for building toolkit-independent, interactive GUIs
2014-08-28 ifultools Insightful Research Tools
2014-08-28 LatticeKrig Multiresolution Kriging based on Markov random fields
2014-08-28 QuantifQuantile Estimation of conditional quantiles using optimal quantization
2014-08-28 rAvis Interface to the bird-watching datasets at proyectoavis.com
2014-08-28 RcmdrPlugin.DoE R Commander Plugin for (industrial) Design of Experiments
2014-08-28 Rlabkey Data exchange between R and LabKey Server
2014-08-28 Runuran R interface to the UNU.RAN random variate generators
2014-08-28 spatstat Spatial Point Pattern analysis, model-fitting, simulation, tests
2014-08-28 trajectories Classes and methods for trajectory data
2014-08-27 arm Data Analysis Using Regression and Multilevel/Hierarchical Models
2014-08-27 bigsplines Smoothing splines for large samples
2014-08-27 blkergm Fitting block ERGM given the block structure on social networks
2014-08-27 dotenv Load environment variables from .env
2014-08-27 falsy Define truthy and falsy values
2014-08-27 fwsim Fisher-Wright Population Simulation
2014-08-27 GMD Generalized Minimum Distance of distributions
2014-08-27 GoFKernel GoFKernel: Testing Goodness-of-fit with the Kernel Density Estimator
2014-08-27 gsubfn Utilities for strings and function arguments
2014-08-27 lmeVarComp Testing for a subset of variance components in linear mixed models
2014-08-27 mediation Causal Mediation Analysis
2014-08-27 MultiSV MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing
2014-08-27 pamr Pam: prediction analysis for microarrays
2014-08-27 pscl Political Science Computational Laboratory, Stanford University
2014-08-27 ptinpoly Point-In-Polyhedron Test (2D and 3D)
2014-08-27 replicationInterval Replication Interval Functions
2014-08-27 R.filesets Easy handling of and access to files organized in structured directories
2014-08-27 RHive R and Hive
2014-08-27 SelvarMix Regularization for variable selection in model-based clustering and discriminant analysis
2014-08-27 SemiParSampleSel Semiparametric Sample Selection Modelling with Continuous Response
2014-08-27 shopifyr An R Interface to the Shopify API
2014-08-27 statebins statebins is an alternative to choropleth maps for USA States
2014-08-26 BoolNet Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks
2014-08-26 BTSPAS Bayesian Time-Strat. Population Analysis
2014-08-26 cents Censored time series
2014-08-26 chipPCR Toolkit of helper functions to pre-process amplification data
2014-08-26 DepthProc DepthProc
2014-08-26 ecoengine Programmatic interface to the API serving UC Berkeley's Natural History Data
2014-08-26 emplik Empirical likelihood ratio for censored/truncated data
2014-08-26 ENMeval Automated runs and evaluations of ecological niche models
2014-08-26 extRemes Extreme Value Analysis
2014-08-26 GGally Extension to ggplot2
2014-08-26 gmatrix An R Package for Harnessing GPU Power
2014-08-26 gMCP Graph Based Multiple Comparison Procedures
2014-08-26 HistogramTools Utility Functions for R Histograms
2014-08-26 HTSCluster Clustering high throughput sequencing (HTS) data
2014-08-26 KANT Package to identify and sort genes overexpressed
2014-08-26 ks Kernel smoothing
2014-08-26 MBmca Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
2014-08-26 minerva minerva: Maximal Information-Based Nonparametric Exploration R package for Variable Analysis
2014-08-26 phytools Phylogenetic Tools for comparative biology (and other things)
2014-08-26 pubmed.mineR Text mining of PubMed Abstracts
2014-08-26 randomForestSRC Random Forests for Survival, Regression and Classification (RF-SRC)
2014-08-26 R.utils Various programming utilities
2014-08-26 sensitivity Sensitivity Analysis
2014-08-26 spcadjust Functions for calibrating control charts
2014-08-26 Sunder Quantification of the effect of geographic versus environmental isolation on genetic differentiation
2014-08-26 swirl Learn R, in R
2014-08-26 testthatsomemore A mocking, stubbing, and file testing framework extending testthat
2014-08-26 TR8 A tool for downloading functional traits data for plant species
2014-08-26 tsDyn Nonlinear time series models with regime switching
2014-08-26 vardpoor Variance estimation for sample surveys by the ultimate cluster method
2014-08-26 visreg Visualization of regression models
2014-08-25 commandr Command pattern in R
2014-08-25 CommonJavaJars Useful libraries for building a Java based GUI under R
2014-08-25 exact2x2 Exact Conditional Tests and Confidence Intervals for 2x2 tables
2014-08-25 formatR Format R Code Automatically
2014-08-25 granova Graphical Analysis of Variance
2014-08-25 hapassoc Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm
2014-08-25 MultNonParam Multivariate Nonparametric Methods
2014-08-25 mutossGUI A graphical user interface for the MuToss Project
2014-08-25 nanop Tools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function
2014-08-25 ncdf Interface to Unidata netCDF data files
2014-08-25 nopp Nash Optimal Party Positions
2014-08-25 phenology Tools to manage a parametric function that describes phenology
2014-08-25 rasterVis Visualization methods for the raster package
2014-08-25 Rd2roxygen Convert Rd to roxygen documentation and utilities to improve documentation
2014-08-25 remote Empirical Orthogonal Teleconnections in R
2014-08-25 sde Simulation and Inference for Stochastic Differential Equations
2014-08-25 shotGroups Analyze shot group data
2014-08-24 caret Classification and Regression Training
2014-08-24 CosmoPhotoz Photometric redshift estimation using generalized linear models
2014-08-24 EMP Expected Maximum Profit for Credit Scoring
2014-08-24 HLSM Hierarchical latent space network model (HLSM)
2014-08-24 hypervolume High-dimensional kernel density estimation and geometry operations
2014-08-24 markdown Markdown rendering for R
2014-08-24 mkde 2D and 3D movement-based kernel density estimates (MKDEs)
2014-08-24 protr Protein Sequence Descriptor Calculation and Similarity Computation with R
2014-08-24 rARPACK R wrapper of ARPACK for large scale eigenvalue/vector problems, on both dense and sparse matrices
2014-08-24 RsimMosaic R Simple IMage Mosaic creation library
2014-08-24 sandwich Robust Covariance Matrix Estimators
2014-08-24 schoRsch Tools for analyzing factorial experiments
2014-08-24 sonicLength Estimating Abundance of Clones from DNA fragmentation data
2014-08-23 AMOEBA A Multidirectional Optimum Ecotope-Based Algorithm
2014-08-23 bigRR Generalized Ridge Regression (with special advantage for p >> n cases)
2014-08-23 ChainLadder Statistical methods and models for the calculation of outstanding claims reserves in general insurance
2014-08-23 CompRandFld Composite-likelihood based Analysis of Random Fields
2014-08-23 gamclass Functions and data for a course on modern regression and classification
2014-08-23 gsDesign Group Sequential Design
2014-08-23 labeling Axis Labeling
2014-08-23 mosaic Project MOSAIC (mosaic-web.org) statistics and mathematics teaching utilities
2014-08-23 mosaicData Project MOSAIC (mosaic-web.org) data sets
2014-08-23 mppa Statistics for analysing multiple simultaneous point processes on the real line
2014-08-23 NHANES NHANES data
2014-08-23 NLP Natural Language Processing Infrastructure
2014-08-23 pauwels2014 Bayesian Experimental Design for Systems Biology
2014-08-23 season Seasonal analysis of health data
2014-08-23 spacetime classes and methods for spatio-temporal data
2014-08-23 survAccuracyMeasures Estimate accuracy measures for risk prediction markers from survival data
2014-08-22 bdsmatrix Routines for Block Diagonal Symmetric matrices
2014-08-22 pipeR Pipe operator and function
2014-08-22 PResiduals Probability scale residuals and residual correlations
2014-08-22 qualityTools Statistical Methods for Quality Science
2014-08-22 rlist A set of tools for working with list objects
2014-08-22 scaRabee Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models
2014-08-22 scholar Analyse citation data from Google Scholar
2014-08-22 spdynmod Spatio-dynamic wetland plant communities model
2014-08-22 tuple Find every match, or orphan, duplicate, triplicate, or other replicated values
2014-08-22 visova Visualization of Analysis of Variance(VISOVA)
2014-08-22 wpp2012 World Population Prospects 2012
2014-08-22 wppExplorer Explorer of World Population Prospects
2014-08-22 xlsxjars Package required POI jars for the xlsx package
2014-08-21 boilerpipeR Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)
2014-08-21 childsds Calculation of standard deviation scores adduced from different growth standards
2014-08-21 codetools Code Analysis Tools for R
2014-08-21 EpiDynamics Dynamic Models in Epidemiology
2014-08-21 MASS Support Functions and Datasets for Venables and Ripley's MASS
2014-08-21 mvnfast Fast multivariate normal methods
2014-08-21 nat nat: NeuroAnatomy Toolbox for Analysis of 3D Image Data
2014-08-21 pegas Population and Evolutionary Genetics Analysis System
2014-08-21 PKfit A Data Analysis Tool for Pharmacokinetics
2014-08-21 RAM R for Amplicon-based Metagenomics
2014-08-21 RcppEigen Rcpp integration for the Eigen templated linear algebra library
2014-08-21 sensory Simultaneous Model-Based Clustering and Imputation via a Progressive Expectation-Maximization (PEM) algorithm
2014-08-21 SocialNetworks Generates social networks based on distance
2014-08-21 SparseTSCGM Sparse time series chain graphical models
2014-08-21 ssym Fitting Semiparametric Symmetric Regression Models
2014-08-21 TableToLongForm TableToLongForm
2014-08-20 bold Interface to Bold Systems API
2014-08-20 CCTpack Cultural Consensus Theory applications to data
2014-08-20 GLSME Generalized Least Squares with Measurement Error
2014-08-20 hydrostats Hydrologic indices for daily time series data
2014-08-20 matpow matrix powers
2014-08-20 metaplus Robust meta-analysis and meta-regression
2014-08-20 mokken Mokken Scale Analysis in R
2014-08-20 opencpu The OpenCPU system for embedded scientific computing and reproducible research
2014-08-20 PtProcess Time Dependent Point Process Modelling
2014-08-20 RcppMLPACK Rcpp integration for MLPACK library
2014-08-20 reldist Relative Distribution Methods
2014-08-20 robumeta Robust variance meta-regression
2014-08-20 rsunlight Interface to Sunlight Foundation APIs
2014-08-20 TDA Statistical Tools for Topological Data Analysis
2014-08-20 x.ent eXtraction of ENTity
2014-08-19 arules Mining Association Rules and Frequent Itemsets
2014-08-19 BAT Biodiversity Assessment Tools
2014-08-19 dendextend Extending R's dendrogram functionality
2014-08-19 DStree Recursive Partitioning for Discrete-Time Survival Trees
2014-08-19 extlasso Maximum penalized likelihood estimation with extended lasso penalty
2014-08-19 FD Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
2014-08-19 GetoptLong Parse command-line arguments and variable interpolation
2014-08-19 HSAUR A Handbook of Statistical Analyses Using R
2014-08-19 HSAUR2 A Handbook of Statistical Analyses Using R (2nd Edition)
2014-08-19 HSAUR3 A Handbook of Statistical Analyses Using R (3rd Edition)
2014-08-19 laeken Estimation of indicators on social exclusion and poverty
2014-08-19 mRMRe R package for parallelized mRMR ensemble feature selection
2014-08-19 R6 Classes with reference semantics
2014-08-19 RcmdrPlugin.EcoVirtual Rcmdr EcoVirtual Plugin
2014-08-19 RcmdrPlugin.EZR R Commander Plug-in for the EZR (Easy R) Package
2014-08-19 RcppArmadillo Rcpp integration for Armadillo templated linear algebra library
2014-08-19 RefManageR Straightforward BibTeX and BibLaTeX Bibliography Management
2014-08-19 rite The Right Editor to Write R
2014-08-19 spartan Spartan (Simulation Parameter Analysis R Toolkit ApplicatioN)
2014-08-19 teigen Model-based clustering and classification with the multivariate t-distribution
2014-08-19 TukeyC Conventional Tukey Test
2014-08-18 BayesX R Utilities Accompanying the Software Package BayesX
2014-08-18 bigmemory.sri A shared resource interface for Bigmemory Project packages
2014-08-18 gap Genetic analysis package
2014-08-18 geigen Calculate generalized eigenvalues of a matrix pair
2014-08-18 grplasso Fitting user specified models with Group Lasso penalty
2014-08-18 kedd Kernel Estimator and Bandwidth Selection for Density and its Derivatives
2014-08-18 list Statistical Methods for the Item Count Technique and List Experiment
2014-08-18 lmmot Multiple Ordinal Tobit (MOT) model
2014-08-18 multcomp Simultaneous Inference in General Parametric Models
2014-08-18 mvrtn Mean and Variance of Truncated Normal Distribution
2014-08-18 PhyActBedRest Marks periods of sleep in Actigraph accelerometer data
2014-08-18 pollstR R client for the Huffpost Pollster API
2014-08-18 recommenderlab Lab for Developing and Testing Recommender Algorithms
2014-08-18 rfordummies Code examples to accompany the book "R for Dummies"
2014-08-18 robCompositions Robust Estimation for Compositional Data
2014-08-18 synthpop Generating synthetic versions of sensitive microdata for statistical disclosure control
2014-08-18 wildlifeDI Calculate Indices of Dynamic Interaction for Wildlife Telemetry Data
2014-08-17 classify Classification Accuracy and Consistency under IRT models
2014-08-17 complmrob Robust linear regression with compositional data as covariates
2014-08-17 gglasso Group Lasso Penalized Learning Using A Unified BMD Algorithm
2014-08-17 LPmerge Merging linkage maps by linear programming
2014-08-17 PTAk Principal Tensor Analysis on k modes
2014-08-17 RcppParallel Parallel programming tools for Rcpp
2014-08-17 W3CMarkupValidator R Interface to W3C Markup Validation Services
2014-08-17 WikipediR A MediaWiki API wrapper
2014-08-16 car Companion to Applied Regression
2014-08-16 DoE.base Full factorials, orthogonal arrays and base utilities for DoE packages
2014-08-16 EcoVirtual Simulation of Ecological Models
2014-08-16 ELT ELT - A package to build Experience Life Tables
2014-08-16 googleVis Interface between R and Google Charts
2014-08-16 planar Multilayer optics
2014-08-16 RECA Relevant Component Analysis for Supervised Distance Metric Learning
2014-08-16 RGoogleAnalytics R Wrapper for the Google Analytics API
2014-08-16 RootsExtremaInflections Finds roots, extrema and inflection points of a curve
2014-08-16 snpar Supplementary Non-parametric Statistics Methods
2014-08-16 tbart Teitz and Bart p-median algorithm
2014-08-15 BBEST Bayesian Estimation of Incoherent Neutron scattering Backgrounds
2014-08-15 COUNT Functions, data and code for count data
2014-08-15 CVTuningCov Regularized Estimators of Covariance Matrices with CV Tuning
2014-08-15 embryogrowth Tools to analyze the thermal reaction norm of embryo growth
2014-08-15 gCat Graph-based two-sample tests for categorical data
2014-08-15 GISTools Some further GIS capabilities for R
2014-08-15 phtt Panel Data Analysis with Heterogeneous Time Trends
2014-08-15 pycno Pycnophylactic Interpolation
2014-08-15 rnrfa UK National River Flow Archive data from R
2014-08-15 rowr Row-based functions for R objects
2014-08-15 rprintf Adaptive builder for formatted strings
2014-08-15 Rttf2pt1 Package for ttf2pt1 program
2014-08-15 rtype A strong type system for R
2014-08-15 semPlot Path diagrams and visual analysis of various SEM packages' output
2014-08-15 sld Estimation and Use of the Quantile-Based Skew Logistic Distribution
2014-08-15 survey analysis of complex survey samples
2014-08-15 Vdgraph This package creates variance dispersion graphs and fraction of design space plots for response surface designs
2014-08-14 AntWeb programmatic interface to the AntWeb
2014-08-14 bamboo Protein Secondary Structure Prediction Using the Bamboo Method
2014-08-14 bayesPop Probabilistic Population Projection
2014-08-14 CBPS R Package for Covariate Balancing Propensity Score
2014-08-14 diseasemapping Calculate observed and expected disease incidence counts from a case file and population data
2014-08-14 effects Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and Mixed-Effects Models
2014-08-14 fastGHQuad Fast Rcpp implementation of Gauss-Hermite quadrature
2014-08-14 hmmm hierarchical multinomial marginal models
2014-08-14 mirt Multidimensional Item Response Theory
2014-08-14 mirtCAT Computerized Adaptive Testing with Multidimensional Item Response Theory
2014-08-14 OceanView Visualisation of Oceanographic Data and Model Output
2014-08-14 RFLPtools Tools to analyse RFLP data
2014-08-14 spatialTailDep Estimation of spatial tail dependence models
2014-08-14 trimTrees Trimmed opinion pools of trees in a random forest
2014-08-14 XLConnect Excel Connector for R
2014-08-14 XLConnectJars JAR dependencies for the XLConnect package
2014-08-13 BlandAltmanLeh Plots (slightly extended) Bland-Altman plots
2014-08-13 DataCombine R tools for making it easier to combine and clean data sets
2014-08-13 dicionariosIBGE Dictionaries for reading microdata surveys from IBGE
2014-08-13 dynsim An R implementation of dynamic simulations of autoregressive relationships
2014-08-13 growthrate Bayesian reconstruction of growth velocity
2014-08-13 grpreg Regularization paths for regression models with grouped covariates
2014-08-13 HAC Estimation, simulation and visualization of Hierarchical Archimedean Copulae (HAC)
2014-08-13 hddtools Hydrological Data Discovery Tools
2014-08-13 HiddenMarkov Hidden Markov Models
2014-08-13 LEAPFrOG Likelihood Estimation of Admixture in Parents From Offspring Genotypes
2014-08-13 linkcomm Tools for Generating, Visualizing, and Analysing Link Communities in Networks
2014-08-13 llama Leveraging Learning to Automatically Manage Algorithms
2014-08-13 optmatch Functions for optimal matching
2014-08-13 picasso Pathwise Calibrated Sparse Shooting Algorithm
2014-08-13 ReporteRs Microsoft Word, Microsoft Powerpoint and HTML documents generation from R
2014-08-13 ReporteRsjars External jars required for package ReporteRs
2014-08-13 rockchalk Regression Estimation and Presentation
2014-08-13 tvd Total Variation Denoising
2014-08-12 astrodatR Astronomical Data
2014-08-12 cAIC4 Conditional Akaike information criterion for lme4
2014-08-12 cramer Multivariate nonparametric Cramer-Test for the two-sample-problem
2014-08-12 ergm.graphlets ergm.graphlets: A Package for ERG Modeling Based on Graphlet Properties
2014-08-12 forecast Forecasting functions for time series and linear models
2014-08-12 lfstat Calculation of Low Flow Statistics for daily stream flow data
2014-08-12 LindenmayeR Functions to Explore L-Systems (Lindenmayer Systems)
2014-08-12 msarc Draws diagrams (mis)representing the results of mass spec experiments
2014-08-12 MuMIn Multi-model inference
2014-08-12 PowerTOST Power and Sample size based on two one-sided t-tests (TOST) for (bio)equivalence studies
2014-08-12 psych Procedures for Psychological, Psychometric, and Personality Research
2014-08-12 qtl Tools for analyzing QTL experiments
2014-08-12 R4CouchDB A R convenience layer for CouchDB
2014-08-12 RandomFields Simulation and Analysis of Random Fields
2014-08-12 random.polychor.pa A Parallel Analysis With Polychoric Correlation Matrices
2014-08-12 rfPermute Estimate Permutation p-values for Random Forest Importance Metrics
2014-08-12 RLRsim Exact (Restricted) Likelihood Ratio tests for mixed and additive models
2014-08-12 ShrinkCovMat Shrinkage Covariance Matrix Estimators
2014-08-12 swfscMisc Miscellaneous Functions for Southwest Fisheries Science Center
2014-08-12 twostageTE Two-Stage Threshold Estimation
2014-08-12 Xmisc Xiaobei's miscellaneous classes and functions
2014-08-11 accelerometry Functions for processing minute-to-minute accelerometer data
2014-08-11 apt Asymmetric Price Transmission (apt)
2014-08-11 CARBayesST Poisson Log-linear Models with Spatio-temporal Random Effects
2014-08-11 crs Categorical Regression Splines
2014-08-11 erer Empirical Research in Economics with R
2014-08-11 GrammR Graphical Representation and Modeling of Metagenomic Reads
2014-08-11 HardyWeinberg Graphical tests for Hardy-Weinberg equilibrium
2014-08-11 hdi High-Dimensional Inference
2014-08-11 ibeemd Irregular-lattice based ensemble empirical mode decomposition
2014-08-11 LakeMetabolizer Tools for the analysis of ecosystem metabolism
2014-08-11 lgtdl A set of methods for longitudinal data objects
2014-08-11 MALDIquant Quantitative Analysis of Mass Spectrometry Data
2014-08-11 MALDIquantForeign Import/Export routines for MALDIquant
2014-08-11 MicroDatosEs Utilities for Official Spanish Microdata
2014-08-11 OutbreakTools basic tools for the analysis of disease outbreaks
2014-08-11 strvalidator Internal validation of forensic STR kits made easy with strvalidator
2014-08-11 summarytools Dataframe Summaries, Frequency Tables and Numerical Summaries with Customizable Output
2014-08-11 threeboost Thresholded variable selection and prediction based on estimating equations
2014-08-11 tigerstats R for Elementary Statistics
2014-08-11 vartors Transform Definition of Variables to R Scripts
2014-08-11 wfe Weighted Linear Fixed Effects Regression Models for Causal Inference
2014-08-11 XBRL Extraction of business financial information from XBRL documents
2014-08-10 alleHap Allele simulation and Haplotype reconstruction from pedigree databases
2014-08-10 hglasso Learning graphical models with hubs
2014-08-10 nleqslv Solve systems of non linear equations
2014-08-10 pdfetch Fetch economic and financial time series data from public sources
2014-08-10 RWebLogo plotting custom sequence logos
2014-08-10 tiger TIme series of Grouped ERrors
2014-08-10 UScancer Create US cancer datasets from SEER, IARC, and US Census data
2014-08-10 vrtest Variance Ratio tests and other tests for Martingale Difference Hypothesis
2014-08-09 astrolibR Astronomy Users Library
2014-08-09 bayesSurv Bayesian Survival Regression with Flexible Error and Random Effects Distributions
2014-08-09 binseqtest Exact Binary Sequential Designs and Analysis
2014-08-09 CAMAN Finite Mixture Models and meta-analysis tools - based on C.A.MAN
2014-08-09 CHAT Clonal Heterogeneity Analysis Tool
2014-08-09 dglars Differential Geometric LARS (dgLARS) method
2014-08-09 distr Object oriented implementation of distributions
2014-08-09 ecipex Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models
2014-08-09 growfunctions Bayesian non-parametric dependent models for time-indexed functional data
2014-08-09 hexbin Hexagonal Binning Routines
2014-08-09 muhaz Hazard Function Estimation in Survival Analysis
2014-08-09 mvmeta Multivariate and Univariate Meta-Analysis and Meta-Regression
2014-08-09 mwaved Multichannel wavelet deconvolution with additive long memory noise
2014-08-09 NScluster Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models
2014-08-09 SnowballC Snowball stemmers based on the C libstemmer UTF-8 library
2014-08-09 SNSequate Standard and Nonstandard Statistical Models and Methods for Test Equating
2014-08-09 sybilcycleFreeFlux cycle-Free Flux balance analysis: Efficient removal of thermodynamically infeasible cycles from metabolic flux distributions
2014-08-08 BcDiag Diagnostics plots for Bicluster Data
2014-08-08 itertools2 itertools2: Functions creating iterators for efficient looping
2014-08-08 LDRTools Tools for Linear Dimension Reduction
2014-08-08 MPTinR Analyze Multinomial Processing Tree Models
2014-08-08 pedometrics Pedometric Tools and Techniques
2014-08-08 portes Portmanteau Tests for Univariate and Multivariate Time Series Models
2014-08-08 rgp R genetic programming framework
2014-08-08 RTriangle Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
2014-08-08 SpatialPack Package for analysis of spatial data
2014-08-08 strap Stratigraphic Tree Analysis for Palaeontology
2014-08-08 stringdist Approximate string matching and string distance functions
2014-08-08 treeclim Numerical calibration of proxy-climate relationships
2014-08-08 wbs Wild Binary Segmentation for multiple change-point detection
2014-08-07 BSSasymp Asymptotic covariance matrices of some BSS mixing and unmixing matrix estimates
2014-08-07 HWxtest Exact Tests for Hardy-Weinberg Proportions
2014-08-07 RGENERATE RGENERATE A tool for generation random variable time series using the tools of 'vars' or 'RMAWGEN'
2014-08-07 signal.hsmm Predict Presence of Signal Peptides
2014-08-07 xergm Extensions for Exponential Random Graph Models (ERGM)
2014-08-06 BioMark Find biomarkers in two-class discrimination problems
2014-08-06 colourlovers R client for the COLOURlovers API
2014-08-06 epiR An R package for the analysis of epidemiological data
2014-08-06 federalregister Client package for the U.S. Federal Register API
2014-08-06 GeneticTools Collection of Genetic Data Analysis Tools
2014-08-06 gMWT Generalized Mann-Whitney Type Tests
2014-08-06 heatmapFit Fit statistic for binary dependent variable models
2014-08-06 klaR Classification and visualization
2014-08-06 osDesign Design and analysis of observational studies
2014-08-06 rags2ridges Ridge Estimation of Precision Matrices from High-Dimensional Data
2014-08-06 rje Miscellaneous useful functions
2014-08-06 RNeXML Implement semantically rich I/O for NeXML format
2014-08-06 spocc R interface to many species occurrence data sources
2014-08-06 TurtleGraphics Turtle graphics in R
2014-08-05 afex Analysis of Factorial Experiments
2014-08-05 dave Functions for "Data Analysis in Vegetation Ecology"
2014-08-05 dendroextras Extra functions to cut, label and colour dendrogram clusters
2014-08-05 dlnm Distributed Lag Non-linear Models
2014-08-05 EMMIXuskew Fitting Unrestricted Multivariate Skew t Mixture Models
2014-08-05 expp Spatial analysis of extra-pair paternity
2014-08-05 hitandrun "Hit and Run" method for sampling uniformly from convex shapes
2014-08-05 hmm.discnp Hidden Markov models with discrete non-parametric observation distributions
2014-08-05 MXM Discovering multiple, statistically-equivalent signatures
2014-08-05 pvsR An R package to interact with the Project Vote Smart API for scientific research
2014-08-05 rfigshare an R interface to figshare.com
2014-08-05 SDMTools Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises
2014-08-04 BHMSMAfMRI Bayesian hierarchical multi-subject multiscale analysis of functional MRI data
2014-08-04 breakaway Species richness estimation and modelling
2014-08-04 ChemometricsWithR Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
2014-08-04 decctools Get energy data from the UK Dept of Energy and Climate Change
2014-08-04 EIAdata R Wrapper for the Energy Information Administration (EIA) API
2014-08-04 kohonen Supervised and unsupervised self-organising maps
2014-08-04 MixedTS Mixed Tempered Stable Distribution
2014-08-04 nloptr R interface to NLopt
2014-08-04 npsm Package for Nonparametric Statistical Methods using R
2014-08-04 phonTools Functions for phonetics in R
2014-08-04 pomp Statistical inference for partially observed Markov processes
2014-08-04 RKEA R/KEA interface
2014-08-04 rPref Preferences and Skyline Computation in R
2014-08-04 RWekajars R/Weka interface jars
2014-08-04 sn The skew-normal and skew-t distributions
2014-08-04 squash Color-based plots for multivariate visualization
2014-08-04 symmoments Symbolic central and noncentral moments of the multivariate normal distribution
2014-08-04 tsintermittent Intermittent Time Series Forecasting
2014-08-03 deldir Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
2014-08-03 interAdapt interAdapt
2014-08-03 mmod Modern measures of population differentiation
2014-08-03 PottsUtils Utility Functions of the Potts Models
2014-08-03 rPython Package allowing R to call Python
2014-08-03 sanitizers C/C++ source code to trigger Address and Undefined Behaviour Sanitizers
2014-08-03 sem Structural Equation Models
2014-08-03 statfi statfi R tools
2014-08-03 vcd Visualizing Categorical Data
2014-08-02 CerioliOutlierDetection Outlier detection using the iterated RMCD method of Cerioli (2010)
2014-08-02 gettingtothebottom Getting to the Bottom, A Package for Learning Optimization Methods
2014-08-02 MGRASTer API Client for the MG-RAST Server of the US DOE KBase
2014-08-02 qdap Bridging the gap between qualitative data and quantitative analysis
2014-08-02 topologyGSA Gene Set Analysis Exploiting Pathway Topology
2014-08-02 xlsx Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
2014-08-01 coenocliner Coenocline simulation
2014-08-01 descr Descriptive statistics
2014-08-01 emil Evaluation of Modeling without Information Leakage
2014-08-01 Familias Probabilities for Pedigrees given DNA data
2014-08-01 fanplot Visualisation of sequential probability distributions using fan charts
2014-08-01 ic.infer Inequality constrained inference in linear normal situations
2014-08-01 LinearizedSVR Linearized Support Vector Regression
2014-08-01 LPStimeSeries Learned Pattern Similarity and Representation for Time Series
2014-08-01 optiscale Optimal scaling
2014-08-01 qdapDictionaries Dictionaries and word lists for the qdap package
2014-08-01 qdapTools Tools for the qdap package
2014-08-01 SIS Sure Independence Screening
2014-08-01 subgroup Methods for exploring treatment effect heterogeneity in subgroup analysis of clinical trials
2014-07-31 agsemisc Miscellaneous plotting and utility functions
2014-07-31 aoristic aoristic analysis with spatial output (kml)
2014-07-31 bayou Bayesian fitting of Ornstein-Uhlenbeck models to phylogenies
2014-07-31 BIFIEsurvey Some Tools for Survey Statistics in Educational Assessment, Developed by BIFIE
2014-07-31 ctv CRAN Task Views
2014-07-31 FrF2 Fractional Factorial designs with 2-level factors
2014-07-31 fslr Wrapper functions for FSL (FMRIB Software Library) from Functional MRI. of the Brain (FMRIB)
2014-07-31 GeoDE A geometrical Approach to Differential expression and gene-set enrichment
2014-07-31 glarma Generalized Linear Autoregressive Moving Average Models
2014-07-31 GNE Computation of generalized Nash equilibria
2014-07-31 lsmeans Least-Squares Means
2014-07-31 MAPA Multiple Aggregation Prediction Algorithm
2014-07-31 mvSLOUCH MultiVariate Stochastic Linear Ornstein-Uhlenbeck models for phylogenetic Comparative hypotHeses
2014-07-31 plotKML Visualization of spatial and spatio-temporal objects in Google Earth
2014-07-31 rcicr Reverse correlation image classification toolbox
2014-07-31 RefFreeEWAS EWAS using reference-Free DNA methylation mixture deconvolution
2014-07-31 rgbif Interface to the Global Biodiversity Information Facility API
2014-07-31 SAPP Statistical Analysis of Point Processes
2014-07-31 spnet Plotting (social) networks on maps
2014-07-31 timsac TIMe Series Analysis and Control package
2014-07-31 wskm Weighted k-means Clustering
2014-07-30 arulesNBMiner Mining NB-Frequent Itemsets and NB-Precise Rules
2014-07-30 btf Estimates univariate function via Bayesian trend filtering
2014-07-30 codep Multiscale Codependence Analysis
2014-07-30 CRF CRF - Conditional Random Fields
2014-07-30 DDIwR DDI related functions
2014-07-30 ExceedanceTools Confidence regions for exceedance sets and contour lines
2014-07-30 glcm Calculate textures from grey-level co-occurrence matrices (GLCMs) in R
2014-07-30 metafor Meta-Analysis Package for R
2014-07-30 miceadds Some additional multiple imputation functions, especially for mice
2014-07-30 mwa MWA package for causal inference in spatiotemporal event data
2014-07-30 rareGE Testing Gene-Environment Interaction for Rare Genetic Variants
2014-07-30 RbioRXN RbioRXN - process Rhea, KEGG, MetaCyc, Unipathway biochemical reaction data
2014-07-30 Surrogate Evaluation of surrogate endpoints in clinical trials
2014-07-30 tmap Thematic Maps
2014-07-29 hasseDiagram Drawing Hasse diagram
2014-07-29 lctools Local Correlation, Spatial Inequalities and other tools
2014-07-29 NeatMap Non-clustered heatmap alternatives
2014-07-29 netmeta Network meta-analysis with R
2014-07-29 pheno2geno Pheno2Geno - Generating genetic markers and maps from molecular phenotypes
2014-07-29 phreeqc R interface to the phreeqc geochemical modeling program
2014-07-29 poppr an R package for genetic analysis of populations with mixed reproduction
2014-07-29 psychomix Psychometric Mixture Models
2014-07-29 rbamtools Reading, manipulation and writing BAM (Binary alignment) files
2014-07-29 RCurl General network (HTTP/FTP/...) client interface for R
2014-07-29 RODBCext Parameterized queries extension for RODBC
2014-07-29 rorutadis Robust Ordinal Regression UTADIS
2014-07-29 stocc Fit a spatial occupancy model via Gibbs sampling
2014-07-28 care High-Dimensional Regression and CAR Score Variable Selection
2014-07-28 cosinor Tools for estimating and predicting the cosinor model
2014-07-28 cplexAPI R Interface to C API of IBM ILOG CPLEX
2014-07-28 cvxclustr Splitting methods for convex clustering
2014-07-28 discreteRV Functions to create and manipulate discrete random variables
2014-07-28 drfit Dose-response data evaluation
2014-07-28 GeneNet Modeling and Inferring Gene Networks
2014-07-28 Gmisc Collection of functions for plotting relations, generating tables, and more
2014-07-28 gmp Multiple Precision Arithmetic
2014-07-28 HTSDiff Differential analysis of RNA-seq data with Poisson mixture models
2014-07-28 LowRankQP Low Rank Quadratic Programming
2014-07-28 ltbayes Simulation-Based Bayesian Inference for Latent Traits of Item Response Models
2014-07-28 peptider Evaluation of diversity in nucleotide libraries
2014-07-28 pryr Tools for computing on the language
2014-07-28 RJSONIO Serialize R objects to JSON, JavaScript Object Notation
2014-07-28 rYoutheria Access to the YouTheria mammal trait database
2014-07-28 sda Shrinkage Discriminant Analysis and CAT Score Variable Selection
2014-07-28 TreePar Estimating birth and death rates based on phylogenies
2014-07-27 GrapheR A multi-platform GUI for drawing customizable graphs in R
2014-07-27 KFKSDS Kalman Filter, Smoother and Disturbance Smoother
2014-07-27 migest Useful R code for the Estimation of Migration
2014-07-27 openxlsx .xlsx reading, writing and editing
2014-07-27 stsm Structural Time Series Models
2014-07-26 dcmr Attribute profile estimation using Diagnostic Classification Models and MCMC
2014-07-26 DiscML DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood
2014-07-26 influence.SEM Case Influence in Structural Equation Models
2014-07-26 infotheo Information-Theoretic Measures
2014-07-26 lpSolve Interface to Lp_solve v. 5.5 to solve linear/integer programs
2014-07-26 OUwie Analysis of evolutionary rates in an OU framework
2014-07-26 shiny Web Application Framework for R
2014-07-26 stsm.class Class and Methods for Structural Time Series Models
2014-07-25 animation A gallery of animations in statistics and utilities to create animations
2014-07-25 AppliedPredictiveModeling Functions and Data Sets for 'Applied Predictive Modeling'
2014-07-25 dcGOR an R package tailored to the needs of analysing ontologies and annotations on protein domains
2014-07-25 inTrees Interpret Tree Ensembles
2014-07-25 mime Map filenames to MIME types
2014-07-25 MSBVAR Markov-Switching, Bayesian, Vector Autoregression Models
2014-07-25 nicheROVER (Niche) (R)egion and Niche (Over)lap Metrics for Multidimensional Ecological Niches
2014-07-25 phylin Spatial interpolation of genetic data
2014-07-25 quantregGrowth Growth charts via regression quantiles
2014-07-25 Rankcluster Model-based clustering for multivariate partial ranking data
2014-07-25 rngWELL toolbox for WELL random number generators
2014-07-25 TreeSimGM Simulating Phylogenetic Trees under a General Model
2014-07-24 imguR Imgur API Client Package for R
2014-07-24 lmerTest Tests for random and fixed effects for linear mixed effect models (lmer objects of lme4 package)
2014-07-24 ManyTests Multiple testing procedures of Cox (2011) and Wang and Cox (2007)
2014-07-24 mkin Routines for fitting kinetic models with one or more state variables to chemical degradation data
2014-07-24 mtk Mexico ToolKit library (MTK)
2014-07-24 pocrm Dose-finding in drug combination Phase I trials using the partial order continual reassessment method (PO-CRM)
2014-07-24 Power2Stage Power and Sample size distribution of 2-stage BE studies via simulations
2014-07-24 randtoolbox toolbox for pseudo and quasi random number generation and RNG tests
2014-07-24 RItools Randomization inference tools
2014-07-24 rvalues Computation of r-values for ranking in high-dimensional settings
2014-07-24 sensitivitymw Sensitivity analysis using weighted M-statistics
2014-07-24 simPH Tools for simulating and plotting quantities of interest estimated from Cox Proportional Hazards models
2014-07-24 spuRs Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R"
2014-07-24 ssh.utils Local and remote system commands with output and error capture
2014-07-24 tables Formula-driven table generation
2014-07-23 acp Autoregressive Conditional Poisson
2014-07-23 CAvariants Correspondence Analysis Variants
2014-07-23 deltaPlotR Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method
2014-07-23 ecospat Spatial ecology miscellaneous methods
2014-07-23 Epi A package for statistical analysis in epidemiology
2014-07-23 hglm Hierarchical Generalized Linear Models
2014-07-23 hglm.data Data for The hglm Package
2014-07-23 hts Hierarchical and grouped time series
2014-07-23 IBDhaploRtools Functions for the Analysis of IBD Haplo output
2014-07-23 mada Meta-Analysis of Diagnostic Accuracy (mada)
2014-07-23 miscFuncs Miscellaneous Useful Functions
2014-07-23 MPAgenomics Multi-Patient Analysis of Genomic Markers
2014-07-23 pitchRx Tools for Harnessing MLBAM Gameday data and Visualizing PITCHf/x
2014-07-23 ReorderCluster Reordering the dendrogram according to the class labels
2014-07-23 rnaseqWrapper Wrapper for several R packages and scripts to automate RNA-seq analysis
2014-07-23 survsim Simulation of simple and complex survival data
2014-07-22 AdaptFitOS Adaptive Semiparametric Regression with Simultaneous Confidence Bands
2014-07-22 babynames US baby names 1880-2013
2014-07-22 clinfun Clinical Trial Design and Data Analysis Functions
2014-07-22 fueleconomy EPA fuel economy data
2014-07-22 glasso Graphical lasso- estimation of Gaussian graphical models
2014-07-22 kinship2 Pedigree functions
2014-07-22 leapp latent effect adjustment after primary projection
2014-07-22 MDPtoolbox Markov Decision Processes toolbox
2014-07-22 mewAvg A Fixed Memeory Moving Expanding Window Average
2014-07-22 MixGHD Model based clustering and classification using the mixture of generalized hyperbolic distributions
2014-07-22 nasaweather Collection of datasets from the ASA 2006 data expo
2014-07-22 nontargetData Quantized simulation data of isotope pattern centroids
2014-07-22 nycflights13 Data about flights departing NYC in 2013
2014-07-22 Rcpp11 R and C++11
2014-07-22 RMRAINGEN RMRAINGEN (R Multi-site RAINfall GENeretor): a package to generate daily time series of rainfall from monthly mean values
2014-07-22 rnbn Access NBN data
2014-07-22 rplos Interface to PLoS Journals search API
2014-07-22 SPACECAP A Program to Estimate Animal Abundance and Density using Bayesian Spatially-Explicit Capture-Recapture Models
2014-07-22 splusTimeDate Times and Dates from S-PLUS
2014-07-21 BayesBridge Bridge Regression
2014-07-21 BayesLogit Logistic Regression
2014-07-21 bootSVD Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data
2014-07-21 BTYD Implementing Buy 'Til You Die Models
2014-07-21 class Functions for Classification
2014-07-21 densityClust Clustering by fast search and find of density peaks
2014-07-21 gamm4 Generalized additive mixed models using mgcv and lme4
2014-07-21 GeoGenetix Quantification of the effect of geographic versus environmental isolation on genetic differentiation
2014-07-21 gss General Smoothing Splines
2014-07-21 HSSVD Biclustering with heterogeneous variance
2014-07-21 icd9 Tools for Working with ICD-9 Codes, and Finding Comorbidities
2014-07-21 ineq Measuring Inequality, Concentration, and Poverty
2014-07-21 mlr mlr: Machine Learning in R
2014-07-21 msme Functions and Datasets for "Methods of Statistical Model Estimation"
2014-07-21 RANN Fast Nearest Neighbour Search (wraps Arya and Mount's ANN library)
2014-07-21 rnoaa NOAA climate data from R
2014-07-21 SASxport Read and Write SAS XPORT Files
2014-07-21 SuperLearner Super Learner Prediction
2014-07-21 TableMonster Table Monster
2014-07-21 texreg Conversion of R regression output to LaTeX or HTML tables
2014-07-21 tidyr Easily tidy data with spread and gather functions
2014-07-20 astrochron An R Package for Astrochronology
2014-07-20 coxinterval Cox-type models for interval-censored data
2014-07-20 ecp Nonparametric Multiple Change Point Analysis of Multivariate Data
2014-07-20 ExomeDepth Calls CNV from exome sequence data
2014-07-20 gWidgetstcltk Toolkit implementation of gWidgets for tcltk package
2014-07-20 lm.beta Add standardized regression coefficients to lm objects
2014-07-20 ProgGUIinR support package for "Programming Graphical User Interfaces in R"
2014-07-20 SBRect Detecting structural breaks using rectangle covering (non-parametric method)
2014-07-19 ergm Fit, Simulate and Diagnose Exponential-Family Models for Networks
2014-07-19 geomorph Geometric morphometric analyses of 2d/3d landmark data
2014-07-19 lme4 Linear mixed-effects models using Eigen and S4
2014-07-19 pcnetmeta Methods for patient-centered network meta-analysis
2014-07-19 permGPU permPGU: Using GPUs in Statistical Genomics
2014-07-19 plsRcox Partial least squares Regression for Cox models and related techniques
2014-07-19 plsRglm Partial least squares Regression for generalized linear models
2014-07-19 RGtk2 R bindings for Gtk 2.8.0 and above
2014-07-19 slp Discrete Prolate Spheroidal (Slepian) Sequence Regression Smoothers
2014-07-19 TEQR Target Equivalence Range Design
2014-07-19 yhatr R binder for the Yhat API
2014-07-18 bezier Bezier Curve and Spline Toolkit
2014-07-18 cherry Multiple testing methods for exploratory research
2014-07-18 colorscience Color Science methods and data
2014-07-18 fuzzyMM Map Matching Using Fuzzy Logic
2014-07-18 mem Moving Epidemic Method R Package
2014-07-18 MonetDB.R Connect MonetDB to R
2014-07-18 sdcMicro Statistical Disclosure Control methods for anonymization of microdata and risk estimation
2014-07-18 siRSM Single-Index Response Surface Models
2014-07-18 SMNCensReg Fitting univariate censored regression model under the scale mixture of normal distributions
2014-07-18 soilphysics Soil Physical Analysis
2014-07-17 crrstep Stepwise covariate selection for the Fine & Gray competing risks regression model
2014-07-17 flora tools for interacting with the Brazilian Flora Checklist
2014-07-17 mvcwt Wavelet analysis of multiple time series
2014-07-17 nscancor Non-Negative and Sparse CCA
2014-07-17 nsprcomp Non-Negative and Sparse PCA
2014-07-17 numOSL Numeric routines for optically stimulated luminescence dating
2014-07-17 randomForest Breiman and Cutler's random forests for classification and regression
2014-07-17 RTDE Robust Tail Dependence Estimation
2014-07-17 SCGLR Supervised Component Generalized Linear Regression (SCGLR)
2014-07-16 Delaporte Statistical functions for the Delaporte distribution
2014-07-16 functional Curry, Compose, and other higher-order functions
2014-07-16 GCAI.bias Guided Correction Approach for Inherited bias (GCAI.bias)
2014-07-16 hillmakeR Perform occupancy analysis
2014-07-16 hpcwld High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
2014-07-16 magicaxis Pretty scientific plotting with minor-tick and log minor-tick support
2014-07-16 NAPPA Performs the processing and normalisation of Nanostring miRNA and mRNA data
2014-07-16 ORCME Order Restricted Clustering for Microarray Experiments
2014-07-16 PCovR Principal Covariates Regression
2014-07-16 phaseR Phase Plane Analysis of One and Two Dimensional Autonomous ODE Systems
2014-07-16 questionr Functions to make surveys processing easier
2014-07-16 SigTree Identify and visualize significantly responsive branches in a phylogenetic tree
2014-07-16 translate Bindings for the Google Translate API v2
2014-07-16 TSP Traveling Salesperson Problem (TSP)
2014-07-15 AICcmodavg Model selection and multimodel inference based on (Q)AIC(c)
2014-07-15 ape Analyses of Phylogenetics and Evolution
2014-07-15 archdata Example Datasets from Archaeological Research
2014-07-15 clickstream Analyzes clickstreams based on Markov chains
2014-07-15 countrycode Convert country names and country codes
2014-07-15 DFIT Differential Functioning of Items and Tests (DFIT) framework analyses
2014-07-15 ParallelForest Random Forest Classification with Parallel Computing
2014-07-15 ParamHelpers Helpers for parameters in black-box optimization, tuning and machine learning
2014-07-15 quad Exact permutation moments of quadratic form statistics
2014-07-15 ROSE ROSE: Random Over-Sampling Examples
2014-07-15 synchrony Methods for computing spatial, temporal, and spatiotemporal statistics
2014-07-15 TSdist Distance Measures for Time Series data
2014-07-14 cg The cg package to compare groups
2014-07-14 dbarts Discrete Bayesian Additive Regression Trees Sampler
2014-07-14 enviPat Isotope pattern, profile and centroid calculation for mass spectrometry
2014-07-14 FatTailsR Power Hyperbolic Functions and Kiener Distributions
2014-07-14 gdimap Generalized Diffusion Magnetic Resonance Imaging
2014-07-14 IDPSurvival Imprecise Dirichlet Process for Survival Analysis
2014-07-14 InterVA4 Replicate and analyse InterVA4
2014-07-14 regress Gaussian linear models with linear covariance structure
2014-07-14 SparseM Sparse Linear Algebra
2014-07-14 stream Infrastructure for Data Stream Mining
2014-07-13 d3Network Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R
2014-07-13 Formula Extended Model Formulas
2014-07-13 imputeLCMD A collection of methods for left-censored missing data imputation
2014-07-13 pgmm Parsimonious Gaussian mixture models
2014-07-13 QoLR Analysis of Health-Related Quality of Life in oncology
2014-07-13 YuGene YuGene: A simple approach to scale gene expression data derived from different platforms for integrated analyses
2014-07-12 FastHCS R package to compute the FastHCS outlyingness index
2014-07-12 IAT Functions to use with data from the Implicit Association Test
2014-07-12 knitcitations Citations for knitr markdown files
2014-07-12 mixture Mixture Models for Clustering and Classification
2014-07-12 ncvreg Regularization paths for SCAD- and MCP-penalized regression models
2014-07-12 r4ss R code for Stock Synthesis
2014-07-11 abc Tools for Approximate Bayesian Computation (ABC)
2014-07-11 BatchExperiments Statistical experiments on batch computing clusters
2014-07-11 BDgraph Graph estimation based on birth-death MCMC approach
2014-07-11 ExtDist Extended Probability Distribution Functions
2014-07-11 indicspecies Studying the statistical relationship between species and groups of sites
2014-07-11 popKorn For interval estimation of mean of selected populations
2014-07-11 refund.wave Wavelet-Domain Regression with Functional Data
2014-07-11 robustlmm Robust Linear Mixed Effects Models
2014-07-11 sgof Multiple hypothesis testing
2014-07-11 tth TeX to HTML/MathML Translators tth/ttm
2014-07-11 yaImpute yaImpute: An R Package for k-NN Imputation
2014-07-10 BAMMtools Analysis and visualization of macroevolutionary dynamics on phylogenetic trees
2014-07-10 BatchJobs Batch computing with R
2014-07-10 CondReg Condition Number Regularized Covariance Estimation
2014-07-10 COSINE COndition SpecIfic sub-NEtwork
2014-07-10 irace Iterated Racing Procedures
2014-07-10 likeLTD Tools to determine DNA profile evidence
2014-07-10 metafolio Metapopulation simulations for conserving salmon through portfolio optimization
2014-07-10 mvglmmRank Multivariate Generalized Linear Mixed Models for Ranking Sports Teams
2014-07-10 npmlreg Nonparametric maximum likelihood estimation for random effect models
2014-07-10 planor Generation of regular factorial designs
2014-07-10 pRSR Test of periodicity using response surface regression
2014-07-10 robustvarComp Robust Estimation of Variance Component Models
2014-07-10 rysgran Grain size analysis, textural classifications and distribution of unconsolidated sediments
2014-07-10 StatMethRank Statistical Methods for Ranking Data
2014-07-10 surv2sampleComp Inference for model-free between-group parameters for censored survival data
2014-07-09 CNOGpro Copy Numbers of Genes in prokaryotes
2014-07-09 crossReg Confidence intervals for crossover points of two simple regression lines
2014-07-09 DTR Estimation and comparison of dynamic treatment regimes
2014-07-09 flare Family of Lasso Regression
2014-07-09 INLABMA Bayesian Model Averaging with INLA
2014-07-09 network Classes for Relational Data
2014-07-09 translateR Bindings for the Google and Microsoft Translation APIs
2014-07-09 verification Weather Forecast Verification Utilities
2014-07-09 VideoComparison Video comparison tool
2014-07-08 EvoRAG Evolutionary Rates Across Gradients
2014-07-08 libamtrack Computational routines for proton and ion radiotherapy
2014-07-08 msm Multi-state Markov and hidden Markov models in continuous time
2014-07-08 mvtnorm Multivariate Normal and t Distributions
2014-07-08 npcp Some nonparametric tests for change-point detection in (multivariate) observations
2014-07-08 RcmdrPlugin.ROC Rcmdr Receiver Operator Characteristic Plug-In package
2014-07-08 rgeos Interface to Geometry Engine - Open Source (GEOS)
2014-07-08 RmixmodCombi Combining Mixture Components for Clustering
2014-07-08 sievetest Sieve test reporting functions
2014-07-08 simTool An easy to learn framework to conduct simulation studies which disengages the researcher from administrative source code
2014-07-08 sms Spatial Microsimulation
2014-07-07 biomod2 Ensemble platform for species distribution modeling
2014-07-07 clusterSim Searching for optimal clustering procedure for a data set
2014-07-07 CoClust Copula based cluster analysis
2014-07-07 LSAfun Applied Latent Semantic Analysis (LSA) functions
2014-07-07 MCAvariants Multiple Correspondence Analysis Variants
2014-07-07 meteoForecast Retrieve meteorological forecast from Meteogalicia and OpenMeteo services
2014-07-07 muscle Multiple Sequence Alignment
2014-07-07 plotSEMM Graphing nonlinear latent variable interactions in SEMM
2014-07-07 readODS Read ODS files and puts them into data frames
2014-07-07 rLakeAnalyzer Package for the analysis of lake physics
2014-07-06 ca Simple, Multiple and Joint Correspondence Analysis
2014-07-06 rkvo Read Key/Value Pair Observations
2014-07-05 CINOEDV Co-Information based N-Order Epistasis Detector and Visualizer
2014-07-05 eive An algorithm for reducing errors-in-variable bias in simple linear regression
2014-07-05 ForIT Functions from the 2nd Italian Forest Inventory (INFC)
2014-07-05 TestScorer GUI for entering test items and obtaining raw and transformed scores
2014-07-05 Thinknum Thinknum Data Connection
2014-07-05 tm.plugin.factiva Import articles from Factiva using the tm text mining framework
2014-07-04 CompGLM Conway-Maxwell-Poisson GLM and distribution functions
2014-07-04 COPASutils Tools for processing COPAS large-particle flow cytometer data
2014-07-04 dslice Dynamic slicing
2014-07-04 epi2loc Epistatic and penetrance models for two-locus genetic interactions
2014-07-04 lvm4net Latent Variable Models for Networks
2014-07-04 PopGenReport PopGen: A simple way to analyse and visualize population genetic data
2014-07-04 rinat Access iNaturalist data through APIs
2014-07-04 SOD SOD for multidimensional scaling
2014-07-03 Bayesianbetareg Bayesian Beta regression: joint mean and precision modeling
2014-07-03 binr Cut Numeric Values Into Evenly Distributed Groups
2014-07-03 CarletonStats Functions For Statistics Classes At Carleton College
2014-07-03 FeedbackTS Analysis of Feedback in Time Series
2014-07-03 fwi.fbp Fire Weather Index System and Fire Behaviour Prediction System Calculations
2014-07-03 mcc Moment Corrected Correlation
2014-07-03 morse MOdelling tools for Reproduction and Survival data in Ecotoxicology
2014-07-03 movMF Mixtures of von Mises-Fisher Distributions
2014-07-03 parallelMap Unified interface to some popular parallelization back-ends for interactive usage and package development
2014-07-03 qualCI Causal Inference with Qualitative and Ordinal Information on Outcomes
2014-07-03 spfrontier Spatial Stochastic Frontier models estimation
2014-07-03 strum STRUctural Modeling of Latent Variables for General Pedigree
2014-07-02 agridat Agricultural datasets
2014-07-02 aprof Amdahl's profiler, directed optimization made easy
2014-07-02 dpcR Digital PCR Analysis
2014-07-02 FunctionalNetworks An algorithm for gene and gene set network inference
2014-07-02 heplots Visualizing Hypothesis Tests in Multivariate Linear Models
2014-07-02 hSDM hierarchical Bayesian species distribution models
2014-07-02 LogConcDEAD Log-concave Density Estimation in Arbitrary Dimensions
2014-07-02 MAVTgsa Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest
2014-07-02 MicSim Performing continuous-time microsimulation
2014-07-02 penMSM Estimating regularized multistate models using L1 penalties
2014-07-02 PolyPatEx Paternity exclusion in autopolyploid species
2014-07-02 PSAboot Bootstrapping for Propensity Score Analysis
2014-07-02 sads Maximum Likelihood Models for Species Abundance Distributions
2014-07-02 SemiParBIVProbit Semiparametric Bivariate Probit Modelling
2014-07-02 spatial.tools R functions for working with spatial data
2014-07-02 SpatialTools Tools for spatial data analysis
2014-07-02 spd Semi Parametric Distribution
2014-07-01 arfima Fractional ARIMA Time Series Modeling
2014-07-01 csn Closed-skew normal distribution
2014-07-01 evtree Evolutionary Learning of Globally Optimal Trees
2014-07-01 pcalg Methods for graphical models and causal inference
2014-07-01 pracma Practical Numerical Math Functions
2014-07-01 PRISMA Protocol Inspection and State Machine Analysis
2014-07-01 qcc Quality Control Charts
2014-07-01 Rcplex R interface to CPLEX
2014-07-01 scoring Proper scoring rules
2014-07-01 sparkTable Sparklines and graphical tables for tex and html
2014-07-01 stochvol Efficient Bayesian Inference for Stochastic Volatility (SV) Models
2014-07-01 subsemble An Ensemble Method for Combining Subset-Specific Algorithm Fits
2014-07-01 sudoku Sudoku Puzzle Generator and Solver
2014-06-30 CORM The Clustering of Regression Models Method
2014-06-30 diskmemoiser Disk Memoisation For R
2014-06-30 GenBinomApps Clopper-Pearson Confidence Interval and Generalized Binomial Distribution
2014-06-30 groc Generalized Regression on Orthogonal Components
2014-06-30 miRtest combined miRNA- and mRNA-testing
2014-06-30 mnormt The multivariate normal and t distributions
2014-06-30 rioja Analysis of Quaternary Science Data
2014-06-30 rmgarch Multivariate GARCH models
2014-06-30 rococo RObust rank COrrelation COefficient and test
2014-06-30 stm Estimation of the Structural Topic Model
2014-06-30 stressr Fetch and plot financial stress index and component data
2014-06-30 subplex Subplex optimization algorithm
2014-06-29 BANOVA Hierarchical Bayesian ANOVA Models
2014-06-29 RPPanalyzer Reads, annotates, and normalizes reverse phase protein array data
2014-06-28 dynBiplotGUI dynBiplotGUI: Full Interactive GUI for Dynamic Biplot in R
2014-06-28 mvabund statistical methods for analysing multivariate abundance data
2014-06-28 np Nonparametric kernel smoothing methods for mixed data types
2014-06-28 npRmpi Parallel nonparametric kernel smoothing methods for mixed data types
2014-06-28 refund Regression with Functional Data
2014-06-28 Rrdrand Generate Physical Random Numbers on Intel CPUs with the RdRand instruction
2014-06-28 stosim Stochastic Simulator for Reliability Modeling of Repairable Systems
2014-06-28 tsoutliers Automatic Detection of Outliers in Time Series
2014-06-27 BrailleR Improved access for blind useRs
2014-06-27 bsts Bayesian structural time series
2014-06-27 cond Approximate conditional inference for logistic and loglinear models
2014-06-27 hsphase Phasing, sire imputation, recombination events identification and pedigree reconstruction of half-sib families using SNP data
2014-06-27 icensmis Study Design and Data Analysis in the presence of error-prone diagnostic tests and self-reported outcomes
2014-06-27 ldr Methods for likelihood-based dimension reduction in regression
2014-06-27 likelihood Methods for maximum likelihood estimation
2014-06-27 lpSolveAPI R Interface for lp_solve version 5.5.2.0
2014-06-27 rforensicbatwing BATWING for calculating forensic trace-suspect match probabilities
2014-06-27 RSA Response surface analysis
2014-06-27 sitar SITAR growth curve analysis
2014-06-27 STEPCAM ABC-SMC inference of the STEPCAM model
2014-06-26 apcluster Affinity Propagation Clustering
2014-06-26 base64enc Tools for base64 encoding
2014-06-26 beepr Easily Play Notification Sounds on any Platform
2014-06-26 Cairo R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output
2014-06-26 CovSel Model-Free Covariate Selection
2014-06-26 dgmb dgmb Simulating data for PLS structural models
2014-06-26 ezsim provide an easy to use framework to conduct simulation
2014-06-26 gamboostLSS Boosting Methods for GAMLSS
2014-06-26 mboost Model-Based Boosting
2014-06-26 pedigreemm Pedigree-based mixed-effects models
2014-06-26 RelValAnalysis Relative Value Analysis
2014-06-26 Rfit Rank Estimation for Linear Models
2014-06-26 RJDBC Provides access to databases through the JDBC interface
2014-06-26 RMark R Code for MARK Analysis
2014-06-26 sp23design Design and Simulation of seamless Phase II-III Clinical Trials
2014-06-25 abctools Tools for ABC analyses
2014-06-25 antitrust Antitrust Library
2014-06-25 boolean3 Boolean Binary Response Models
2014-06-25 changepoint An R package for changepoint analysis
2014-06-25 csvread Fast Specialized CSV File Loader
2014-06-25 dagbag Learning directed acyclic graphs (DAGs) through bootstrap aggregating
2014-06-25 deSolve General Solvers for Initial Value Problems of Ordinary Differential Equations (ODE), Partial Differential Equations (PDE), Differential Algebraic Equations (DAE), and Delay Differential Equations (DDE)
2014-06-25 GB2 Generalized Beta Distribution of the Second Kind: properties, likelihood, estimation
2014-06-25 ngram An n-gram Babbler
2014-06-25 nlsMicrobio Nonlinear regression in predictive microbiology
2014-06-25 nlstools Tools for nonlinear regression diagnostics
2014-06-25 PMCMR Calculate Pairwise Multiple Comparisons of Mean Rank Sums
2014-06-25 SocialMediaMineR A Social Media Search and Analytic Tool
2014-06-25 TopKLists Inference, aggregation and visualization for top-k ranked lists
2014-06-24 bingat Binary Graph Analysis Tools
2014-06-24 BoomSpikeSlab MCMC for spike and slab regression
2014-06-24 bst Gradient Boosting
2014-06-24 bujar Buckley-James Regression for Survival Data with High-Dimensional Covariates
2014-06-24 cati Community Assembly by Traits: Individuals and beyond
2014-06-24 EasyStrata Evaluation of stratified genome-wide association meta-analysis results
2014-06-24 fdakma Functional Data Analysis: K-Mean Alignment
2014-06-24 FisHiCal Iterative FISH-based Calibration of Hi-C Data
2014-06-24 ftsa Functional time series analysis
2014-06-24 ggvis Interactive grammar of graphics
2014-06-24 goftest Classical Goodness-of-Fit Tests for Univariate Distributions
2014-06-24 InventorymodelPackage Inventorymodel
2014-06-24 LS2Wstat A Multiscale Test of Spatial Stationarity for LS2W processes
2014-06-24 matlab MATLAB emulation package
2014-06-24 metasens Advanced statistical methods to model and adjust for bias in meta-analysis
2014-06-24 mvpart Multivariate partitioning
2014-06-24 optR Optimization Toolbox for solving linear systems
2014-06-24 pedgene Gene-level statistics for Pedigree Data
2014-06-24 revealedPrefs Revealed preferences and microeconomic rationality
2014-06-24 RobPer Robust periodogram methods for irregularly sampled time series and robust periodicity detection methods
2014-06-24 RWBP Detects spatial outliers using a Random Walk on Bipartite Graph
2014-06-24 rwt Rice Wavelet Toolbox wrapper
2014-06-24 sampleSelection Sample Selection Models
2014-06-24 spTimer Spatio-Temporal Bayesian Modelling Using R
2014-06-24 weatherData Get Weather Data from the Web
2014-06-23 DNAprofiles DNA profiling evidence analysis
2014-06-23 GPvam Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling
2014-06-23 gramEvol Grammatical Evolution For R
2014-06-23 mvoutlier Multivariate outlier detection based on robust methods
2014-06-23 PubMedWordcloud PubMed Word Clouds
2014-06-23 qmethod Analysis of subjective perspectives using Q methodology
2014-06-23 rClinicalCodes R tools for integrating with the www.clinicalcodes.org repository
2014-06-23 sdcTable Methods for statistical disclosure control in tabular data
2014-06-23 smacof Multidimensional Scaling in R: SMACOF
2014-06-22 bayescount Power calculations and Bayesian analysis of count distributions and FECRT data using MCMC
2014-06-22 eegAnalysis Tools for analysis and classification of electroencephalography (EEG) data
2014-06-22 mded Measuring the difference between two empirical distributions
2014-06-22 MultiLCIRT Multidimensional latent class Item Response Theory models
2014-06-22 pbdNCDF4 Programming with Big Data – Interface to Parallel Unidata NetCDF4 Format Data Files
2014-06-22 PracTools Tools for Designing and Weighting Survey Samples
2014-06-22 support.BWS Basic functions for supporting an implementation of best-worst scaling
2014-06-22 support.CEs Basic functions for supporting an implementation of choice experiments
2014-06-22 TaoTeProgramming Illustrations from Tao Te Programming
2014-06-22 transport Optimal transport in various forms
2014-06-21 aemo Download and process AEMO price and demand data
2014-06-21 BBmisc Miscellaneous helper functions for B. Bischl
2014-06-21 bcpmeta Bayesian Multiple Changepoint Detection Using Metadata
2014-06-21 Boom Bayesian Object Oriented Modeling
2014-06-21 catIrt An R Package for Simulating IRT-Based Computerized Adaptive Tests
2014-06-21 ConnMatTools Tools for working with connectivity matrices
2014-06-21 copulaedas Estimation of Distribution Algorithms Based on Copulas
2014-06-21 funreg funreg (Functional Regression for Irregularly Timed Data)
2014-06-21 markovchain A package to handle and analyse discrete Markov chains
2014-06-21 runjags Interface utilities, parallel computing methods and additional distributions for MCMC models in JAGS
2014-06-20 MPSEM Modeling Phylogenetic Signals using Eigenvector Maps
2014-06-20 nadiv Functions to construct (non)additive genetic relatedness matrices and facilitate animal model analyses
2014-06-20 parallelMCMCcombine Methods for combining independent subset Markov chain Monte Carlo (MCMC) posterior samples to estimate a posterior density given the full data set
2014-06-20 pawacc Physical activity with accelerometers
2014-06-20 usl Analyze system scalability with the Universal Scalability Law
2014-06-19 alm R wrapper to the almetrics API platform developed by PLoS
2014-06-19 CIDnetworks Generative models for complex networks with conditionally independent dyadic structure
2014-06-19 CommunityCorrelogram Ecological Community Correlogram
2014-06-19 hazus Damage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters
2014-06-19 iC10 A copy number and expression-based classifier for breast tumours
2014-06-19 plotGoogleMaps Plot spatial or spatio-temporal data over Google Maps
2014-06-19 pushoverr Send push notifications using Pushover
2014-06-19 R2jags A Package for Running jags from R
2014-06-19 RoughSets Data Analysis Using Rough Set and Fuzzy Rough Set Theories
2014-06-19 StatMatch Statistical Matching (aka data fusion)
2014-06-18 fmri Analysis of fMRI experiments
2014-06-18 iC10TrainingData Training datasets for iC10 package
2014-06-18 iGasso Genetic association tests and utilities
2014-06-18 localsolver R API to LocalSolver
2014-06-18 mmand Mathematical morphology in any number of dimensions
2014-06-18 OmicKriging OmicKriging for Phenotypic Prediction
2014-06-18 pse Parameter space exploration with Latin Hypercubes
2014-06-18 rivervis River Visualisation Tool
2014-06-17 bnlearn Bayesian network structure learning, parameter learning and inference
2014-06-17 BradleyTerry2 Bradley-Terry Models
2014-06-17 clogitL1 Fitting exact conditional logistic regression with lasso and elastic net penalties
2014-06-17 cmprsk Subdistribution Analysis of Competing Risks
2014-06-17 dendsort Sorting and reordering dendrogram nodes
2014-06-17 h2o H2O R Interface
2014-06-17 KernSmoothIRT Nonparametric Item Response Theory
2014-06-17 marked R Code for mark-recapture analysis
2014-06-17 marmap Import, plot and analyze bathymetric and topographic data
2014-06-17 pmml Generate PMML for various models
2014-06-17 pmmlTransformations Transforms input data from a PMML perspective
2014-06-17 sglasso Lasso method for RCON(V,E) models
2014-06-17 spcr Sparse principal component regression
2014-06-17 streamMOA stream - Interface to MOA Algorithms
2014-06-17 surveillance Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
2014-06-17 tictoc Functions for timing R scripts, as well as implementations of Stack and List structures
2014-06-17 TreatmentSelection Evaluate Treatment Selection Biomarkers
2014-06-17 vdg Variance Dispersion Graphs and Fraction of Design Space Plots
2014-06-16 arnie "Arnie" box office records 1982-2014
2014-06-16 bizdays Functions to handle business days calculations
2014-06-16 ipdw ipdw: Interpolation by Inverse Path Distance Weighting
2014-06-16 nat.utils File System Utility Functions for NeuroAnatomy Toolbox
2014-06-16 Rglpk R/GNU Linear Programming Kit Interface
2014-06-16 RI2by2 Randomization inference for treatment effects on a binary outcome
2014-06-16 SemiMarkov Multi-States Semi-Markov Models
2014-06-16 sfsmisc Utilities from Seminar fuer Statistik ETH Zurich
2014-06-16 StratSel Strategic Selection Estimator
2014-06-16 textometry Textual Data Analysis Package used by the TXM Software
2014-06-15 choroplethr Functions to simplify the creation of choropleths (thematic maps) in R
2014-06-15 installr Using R to install stuff (such as: R, Rtools, RStudio, git, and more!)
2014-06-15 Matrix Sparse and Dense Matrix Classes and Methods
2014-06-15 NLPutils Natural Language Processing Utilities
2014-06-15 RSKC Robust sparse K-means
2014-06-15 shinyFiles A server-side file system viewer for shiny
2014-06-15 tm.plugin.dc Text Mining Distributed Corpus Plug-In
2014-06-15 xhmmScripts XHMM R scripts
2014-06-14 babel Ribosome profiling data analysis
2014-06-14 disclapmix Discrete Laplace mixture inference using the EM algorithm
2014-06-14 rbitcoinchartsapi R Package for the BitCoinCharts.com API
2014-06-14 table1xls Produces summary tables and exports them to multi-tab spreadsheet format (.xls or .xlsx)
2014-06-14 WGCNA Weighted Correlation Network Analysis
2014-06-13 AssetPricing Optimal pricing of assets with fixed expiry date
2014-06-13 DeducerText Deducer GUI for Text Data
2014-06-13 ElstonStewart Elston-Stewart Algorithm
2014-06-13 ESGtoolkit Toolkit for the simulation of financial assets and interest rates models
2014-06-13 PCDSpline Semiparametric regression analysis of panel count data using monotone splines
2014-06-13 prim Patient Rule Induction Method (PRIM)
2014-06-13 pROC display and analyze ROC curves
2014-06-13 ReliabilityTheory Tools for structural reliability analysis
2014-06-13 s2dverification Set of common tools for model diagnostics
2014-06-13 wordcloud Word Clouds
2014-06-12 apsimr Edit, run and evaluate APSIM simulations from R easily
2014-06-12 clustMD Model based clustering for mixed data
2014-06-12 CopyDetect Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests
2014-06-12 Evapotranspiration Evapotranspiration
2014-06-12 excursions Functions that compute probabilistic excursion sets and contour credibility regions for latent Gaussian random processes and fields
2014-06-12 faraway Functions and datasets for books by Julian Faraway
2014-06-12 flip Multivariate Permutation Tests
2014-06-12 iterpc Efficient iterator for permutations and combinations
2014-06-12 poweRlaw Fitting heavy tailed distributions: the poweRlaw package
2014-06-12 QCA A Package for Qualitative Comparative Analysis
2014-06-12 qVarSel Variables Selection for Clustering and Classification
2014-06-12 RXMCDA An XMCDA parser for R
2014-06-12 spBayesSurv Spatial Copula Modelling to Bayesian Survival Analysis
2014-06-12 ustyc Fetch US Treasury yield curve data
2014-06-12 yaml Methods to convert R data to YAML and back
2014-06-11 conting Bayesian analysis of contingency tables
2014-06-11 enaR Tools for ecological network analysis (ena) in R
2014-06-11 JMbayes Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
2014-06-11 mice Multivariate Imputation by Chained Equations
2014-06-11 munsellinterpol Interpolation of Munsell renotation data to convert any hue and chroma values to CIE xyY, CIE XYZ, sRGB, CIE Lab or CIE Luv
2014-06-11 pvclass P-values for Classification
2014-06-11 R.cache Fast and light-weight caching (memoization) of objects and results to speed up computations
2014-06-11 tau Text Analysis Utilities
2014-06-11 textcat N-Gram Based Text Categorization
2014-06-11 tm Text Mining Package
2014-06-11 tm.plugin.alceste Import texts from files in the Alceste format using the tm text mining framework
2014-06-11 tm.plugin.europresse Import articles from Europresse using the tm text mining framework
2014-06-11 tm.plugin.lexisnexis Import articles from LexisNexis using the tm text mining framework
2014-06-11 tm.plugin.mail Text Mining E-Mail Plug-In
2014-06-11 tm.plugin.webmining Retrieve structured, textual data from various web sources
2014-06-11 topicmodels Topic models
2014-06-10 BEDASSLE Disentangles the effects of geographic and ecological isolation on genetic differentiation
2014-06-10 BEQI2 Benthic Ecosystem Quality Index 2
2014-06-10 BGLR Bayesian Generalized Linear Regression
2014-06-10 birdring Methods to analyse ring re-encounter data
2014-06-10 carcass Estimation of the number of fatalities from carcass searches
2014-06-10 evolvability Calculation of evolvability parameters
2014-06-10 exams Automatic Generation of Exams in R
2014-06-10 gsmoothr Smoothing tools
2014-06-10 HiCseg Detection of domains in HiC data
2014-06-10 ICsurv A package for semiparametric regression analysis of interval-censored data
2014-06-10 nhlscrapr Compiling the NHL Real Time Scoring System Database for easy use in R
2014-06-10 openair Tools for the analysis of air pollution data
2014-06-10 ORCI Several confidence intervals for the odds ratio
2014-06-10 popdemo Provides Tools For Demographic Modelling Using Projection Matrices
2014-06-10 PSCBS Analysis of Parent-Specific DNA Copy Numbers
2014-06-10 qmap Statistical transformations for post-processing climate model output
2014-06-10 RcppRedis Rcpp bindings for Redis using the hiredis library
2014-06-10 rjson JSON for R
2014-06-10 rlme Rank-based Estimation and Prediction in Random Effects Nested Models
2014-06-10 RSNPset RSNPset
2014-06-10 SCI Standardized Climate Indices such as SPI, SRI or SPEI
2014-06-10 SeqFeatR Calculates possible epitopes and co-mutations
2014-06-10 vcdExtra vcd extensions and additions
2014-06-09 EBEN Empirical Bayesian Elastic Net
2014-06-09 helsinki Helsinki open data R tools
2014-06-09 IsoCI Confidence intervals for current status data based on transformations and bootstrap
2014-06-09 MCMCglmm MCMC Generalised Linear Mixed Models
2014-06-09 pgirmess Data analysis in ecology
2014-06-09 primerTree primerTree
2014-06-08 Boruta A wrapper algorithm for all-relevant feature selection
2014-06-08 Luminescence Package for Luminescence Dating data analysis
2014-06-08 matrixStats Methods that apply to rows and columns of a matrix
2014-06-08 Rcpp Seamless R and C++ Integration
2014-06-08 rmngb rmngb Miscellaneous
2014-06-08 R.rsp Dynamic generation of scientific reports
2014-06-08 synlik Synthetic Likelihood methods for intractable likelihoods
2014-06-07 C50 C5.0 Decision Trees and Rule-Based Models
2014-06-07 compositions Compositional Data Analysis
2014-06-07 Cubist Rule- and Instance-Based Regression Modeling
2014-06-07 genasis Global ENvironmental ASsessment Information System (GENASIS) computational tools
2014-06-07 hoardeR hoardeR package
2014-06-07 Interact Tests for marginal interactions in a 2 class response model
2014-06-07 io A unified framework for input-output operations in R
2014-06-07 kobe Tools for the provision of scientific fisheries management advice
2014-06-07 PortRisk Portfolio Risk Analysis
2014-06-07 Rmalschains Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R
2014-06-07 VAR.etp VAR modelling: estimation, testing, and prediction
2014-06-06 BEST Bayesian Estimation Supersedes the t-Test
2014-06-06 equivalence Provides tests and graphics for assessing tests of equivalence
2014-06-06 KFAS Kalman Filter and Smoother for Exponential Family State Space Models
2014-06-06 memgene Spatial pattern detection in genetic distance data using Moran's Eigenvector Maps
2014-06-06 overlap Estimates of coefficient of overlapping for animal activity patterns
2014-06-06 quantspec Quantile-based Spectral Analysis of Time Series
2014-06-06 rareNMtests Ecological and biogeographical null model tests for comparing rarefaction curves
2014-06-06 tweedie Tweedie exponential family models
2014-06-05 AR1seg Segmentation of an autoregressive Gaussian process of order 1
2014-06-05 diffIRT Diffusion IRT models for Response and Response Time Data
2014-06-05 maptools Tools for reading and handling spatial objects
2014-06-05 mbest Moment-Based Estimation for Hierarchical Models
2014-06-05 peacots Periodogram Peaks in Correlated Time Series
2014-06-05 phylolm Phylogenetic Linear Regression
2014-06-05 Rvcg Manipulations of triangular meshes (smoothing, quadric edge collapse decimation, im- and export of various mesh file-formats, cleaning, etc.) based on the VCGLIB API
2014-06-05 SpatialEpi Methods and Data for Spatial Epidemiology
2014-06-05 vbsr Variational Bayes Spike Regression Regularized Linear Models
2014-06-04 agRee Various Methods for Measuring Agreement
2014-06-04 ChargeTransport Charge Transfer Rates and Charge Carrier Mobilities
2014-06-04 GIGrvg Random variate generator for the GIG distribution
2014-06-04 kequate The kernel method of test equating
2014-06-04 rsdepth Ray Shooting Depth (i.e. RS Depth) functions for bivariate analysis
2014-06-04 sas7bdat SAS Database Reader (experimental)
2014-06-04 secrdesign Sampling Design for Spatially Explicit Capture–Recapture
2014-06-04 sybil sybil - Efficient Constrained Based Modelling in R
2014-06-04 zoib Bayesian Inference for Zero/One Inflated Beta Regression
2014-06-03 ebSNP Genotyping and SNP calling using single-sample next generation sequencing data
2014-06-03 gamlss.add GAMLSS Additive
2014-06-03 gstudio Analyses and functions related to the spatial analysis of genetic marker data
2014-06-03 mapdata Extra Map Databases
2014-06-03 maps Draw Geographical Maps
2014-06-03 popgraph This is an R package that constructs and manipulates population graphs
2014-06-03 RPushbullet R interface to the wonderful Pushbullet service
2014-06-03 sorvi Finnish Open Government Data Toolkit
2014-06-03 VLMC VLMC – Variable Length Markov Chains
2014-06-02 adehabitatLT Analysis of animal movements
2014-06-02 bayesLife Bayesian Projection of Life Expectancy
2014-06-02 CORE Cores of Recurrent Events
2014-06-02 dissUtils Utilities for making pairwise comparisons of multivariate data
2014-06-02 HiveR 2D and 3D Hive Plots for R
2014-06-02 lmomco L-moments, Censored L-moments, Trimmed L-moments, L-comoments, and Many Distributions
2014-06-02 Mposterior Mposterior: R package for Robust and Scalable Bayes via a Median of Subset Posterior Measures
2014-06-02 NCBI2R NCBI2R-An R package to navigate and annotate genes and SNPs
2014-06-02 orloca The package deals with Operations Research LOCational Analysis models
2014-06-02 rHealthDataGov Retrieve data sets from the HealthData.gov data API
2014-06-02 tableone Create "Table 1" to describe baseline characteristics
2014-06-01 acss Algorithmic Complexity for Short Strings
2014-06-01 aster Aster Models
2014-06-01 rmetasim An individual-based population genetic simulation environment
2014-05-31 ChemoSpec Exploratory Chemometrics for Spectroscopy
2014-05-31 ggtern An extension to ggplot2, for the creation of ternary diagrams
2014-05-31 lasso2 L1 constrained estimation aka ‘lasso’
2014-05-31 pbdMPI Programming with Big Data – Interface to MPI
2014-05-31 pbdSLAP Programming with Big Data – Scalable Linear Algebra Packages
2014-05-31 pbo Probability of Backtest Overfitting
2014-05-31 RadOnc Analytical Tools for Radiation Oncology
2014-05-31 RcppGSL Rcpp integration for GNU GSL vectors and matrices
2014-05-31 ripa R Image Processing and Analysis
2014-05-31 rplotengine R as a plotting engine
2014-05-31 statmod Statistical Modeling
2014-05-31 STPGA Selection of Training Populations by Genetic Algorithm
2014-05-31 taRifx.geo Collection of various spatial functions
2014-05-30 argparser Command-line argument parser
2014-05-30 ARPobservation Tools for simulating different methods of observing behavior based on alternating renewal processes
2014-05-30 chngpt Change Point Logistic Regression
2014-05-30 GSIF Global Soil Information Facilities
2014-05-30 IBDsim Simulation of chromosomal regions shared by family members
2014-05-30 interventionalDBN Interventional Inference for Dynamic Bayesian Networks
2014-05-30 kdetrees Nonparametric method for identifying discordant phylogenetic trees
2014-05-30 mcprofile Multiple Contrast Profiles
2014-05-30 mstate Data preparation, estimation and prediction in multi-state models
2014-05-30 qcr Quality control and reliability
2014-05-30 RSGHB Functions for Hierarchical Bayesian Estimation: A Flexible Approach
2014-05-30 SensitivityCaseControl Sensitivity Analysis for Case-Control Studies
2014-05-30 sparr The sparr package: SPAtial Relative Risk
2014-05-30 TBEST Tree Branches Evaluated Statistically for Tightness
2014-05-30 wsrf Weighted Subspace Random Forest
2014-05-29 bootruin A bootstrap test for the probability of ruin in the classical risk process
2014-05-29 fda.usc Functional Data Analysis and Utilities for Statistical Computing (fda.usc)
2014-05-29 FLSSS Fixed Size Subset Sum Solution
2014-05-29 GMCM Fast estimation of Gaussian Mixture Copula Models
2014-05-29 GPFDA Apply Gaussian Process in Functional data analysis
2014-05-29 hamlet Hierarchical Optimal Matching and Machine Learning Toolbox
2014-05-29 LearnBayes Functions for Learning Bayesian Inference
2014-05-29 pairwise Rasch Model Parameters by Pairwise Algorithm
2014-05-29 SSN Spatial Modeling on Stream Networks
2014-05-29 stargazer LaTeX/HTML code and ASCII text for well-formatted regression and summary statistics tables
2014-05-29 taRifx Collection of utility and convenience functions
2014-05-28 dostats Compute statistics helper functions
2014-05-28 gtools Various R programming tools
2014-05-28 harvestr A Parallel Simulation Framework
2014-05-28 ivlewbel Uses heteroscedasticity to estimate mismeasured and endogenous regressor models
2014-05-28 mixexp Design and analysis of mixture experiments
2014-05-28 ordBTL Modelling comparison data with ordinal response
2014-05-28 SAVE Bayesian emulation, calibration and validation of computer models
2014-05-28 SciencesPo Tools for analyzing political behaviour data
2014-05-28 seg A set of tools for measuring spatial segregation
2014-05-28 SINGLE Estimate sparse dynamic graphs using the Smooth Incremental Graphical Lasso Estimation (SINGLE) algorithm
2014-05-28 VGAM Vector Generalized Linear and Additive Models
2014-05-28 VGAMdata Data supporting the VGAM package
2014-05-27 bbmle Tools for general maximum likelihood estimation
2014-05-27 bmmix Bayesian multinomial mixture
2014-05-27 bootLR Bootstrapped confidence intervals for (negative) likelihood ratio tests
2014-05-27 capm Companion Animal Population Management
2014-05-27 DiceEval Construction and evaluation of metamodels
2014-05-27 frm Regression analysis of fractional responses
2014-05-27 gems Generalized multistate simulation model
2014-05-27 GPLTR Generalized Partially Linear Tree-based Regression Model
2014-05-27 metagen Inference in Meta Analysis and Meta Regression
2014-05-27 micromap Linked Micromap Plots
2014-05-27 PHeval Evaluation of the proportional hazards assumption with a standardized score process
2014-05-27 PopED Population (and individual) optimal Experimental Design
2014-05-27 scam Shape constrained additive models
2014-05-27 timereg Flexible regression models for survival data
2014-05-26 biotools Tools for Biometry and Applied Statistics in Agricultural Science
2014-05-26 constrainedKriging Constrained, covariance-matching constrained and universal point or block kriging
2014-05-26 DDD Diversity-dependent diversification
2014-05-26 NHPoisson Modelling and validation of non homogeneous Poisson processes
2014-05-26 PBD Protracted birth-death model of diversification
2014-05-26 pbdPROF Programming with Big Data — MPI Profiling Tools
2014-05-26 plotrix Various plotting functions
2014-05-26 rugarch Univariate GARCH models
2014-05-26 SRRS The Stepwise Response Refinement Screener (SRRS)
2014-05-25 knitr A general-purpose package for dynamic report generation in R
2014-05-25 prettyR Pretty descriptive stats
2014-05-25 RSelenium R bindings for Selenium WebDriver
2014-05-24 bigGP Distributed Gaussian process calculations
2014-05-24 EMMREML Fitting mixed models with known covariance structures
2014-05-24 faoutlier Influential case detection methods for factor analysis and SEM
2014-05-24 glmnet Lasso and elastic-net regularized generalized linear models
2014-05-24 RSocrata Download Socrata datasets as R data frames
2014-05-23 alphashape3d Implementation of the 3D alpha-shape for the reconstruction of 3D sets from a point cloud
2014-05-23 blockTools Block, assign, and diagnose potential interference in randomized experiments
2014-05-23 ExtremeBounds Extreme Bounds Analysis (EBA)
2014-05-23 fda Functional Data Analysis
2014-05-23 hyperSpec Interface for hyperspectral data, i.e. spectra + meta info (spatial, time, concentration, ...)
2014-05-23 lazyWeave LaTeX Wrappers for R Users
2014-05-23 Modalclust Hierarchical Modal Clustering
2014-05-23 OrgMassSpecR Organic Mass Spectrometry
2014-05-23 rainfreq Rainfall Frequency (Design Storm) Estimates from the US National Weather Service
2014-05-23 rpart.utils Tools for parsing and manipulating rpart objects, including generating machine readable rules
2014-05-23 RSNNS Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS)
2014-05-23 tsbridge Calculate normalising constants for Bayesian time series models
2014-05-23 ucbthesis UC Berkeley graduate division thesis template
2014-05-22 BCE Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
2014-05-22 GCD Global Charcoal Database
2014-05-22 geotopbricks geotopbricks
2014-05-22 nmcdr Non-parametric Multiple Change-points Detection
2014-05-22 paleofire paleofire: an R package to analyse sedimentary charcoal records from the Global Charcoal Database to reconstruct past biomass burning
2014-05-22 qgraph Network-based data visualization
2014-05-22 stochprofML Stochastic Profiling using Maximum Likelihood Estimation
2014-05-22 Storm Write Storm Bolts in R using the Storm Multi-Language Protocol
2014-05-22 treecm Centre of mass assessment and consolidation of trees
2014-05-21 autoencoder An implementation of sparse autoencoder for automatic learning of representative features from unlabeled data
2014-05-21 clues Clustering Method Based on Local Shrinking
2014-05-21 dplyr dplyr: a grammar of data manipulation
2014-05-21 ggplot2 An implementation of the Grammar of Graphics
2014-05-21 ivivc A data analysis tool for in vitro-in vivo correlation (IVIVC)
2014-05-21 KRLS Kernel-based Regularized Least squares (KRLS)
2014-05-21 monomvn Estimation for multivariate normal and Student-t data with monotone missingness
2014-05-21 R.matlab Read and write of MAT files together with R-to-MATLAB connectivity
2014-05-21 Rmpi Interface (Wrapper) to MPI (Message-Passing Interface)
2014-05-21 spatial.gev.bma Hierarchical spatial generalized extreme value (GEV) modeling with Bayesian Model Averaging (BMA)
2014-05-21 sybilSBML SBML Integration in Package sybil
2014-05-21 Wats Wrap Around Time Series graphics
2014-05-20 extracat Categorical Data Analysis and Visualization
2014-05-20 prefmod Utilities to fit paired comparison models for preferences
2014-05-20 ResourceSelection Resource Selection (Probability) Functions for Use-Availability Data
2014-05-20 xpose4 Xpose 4
2014-05-19 cubfits Codon Usage Bias Fits
2014-05-19 FLIM Farewell’s Linear Increments Model
2014-05-19 ggm A package for Graphical Markov Models
2014-05-19 GRTo Tools for the analysis of Gutenberg-Richter distributions of earthquake magnitudes
2014-05-19 gset Group Sequential Design in Equivalence Studies
2014-05-19 hawkes Hawkes process simulation and calibration toolkit
2014-05-19 letsR Tools for data handling and analysis in macroecology
2014-05-19 MASSTIMATE Body Mass Estimation Equations for Vertebrates
2014-05-19 oce Analysis of Oceanographic data
2014-05-19 ODMconverter tools to convert ODM files
2014-05-19 PVAClone Population Viability Analysis with Data Cloning
2014-05-19 qlcMatrix Utility sparse matrix functions for Quantitative Language Comparison
2014-05-19 sharx Models and Data Sets for the Study of Species-Area Relationships
2014-05-19 sse Sample size estimation
2014-05-18 cladoRcpp C++ implementations of phylogenetic cladogenesis calculations
2014-05-18 cstar Substantive significance testing for regression estimates and marginal effects
2014-05-18 Hankel Univariate non-parametric two-sample test based on empirical Hankel transforms
2014-05-18 isingLenzMC Monte Carlo for classical Ising Model
2014-05-18 MC2toPath Translates information from netcdf files with MC2 output into inter-PVT transitions
2014-05-18 R4CDISC Read CDISC data files
2014-05-18 robust Robust Library
2014-05-17 boostr A modular framework to bag or boost any estimation procedure
2014-05-17 entropart Entropy partitioning to measure diversity
2014-05-17 gambin Fit the GamBin model to species abundance distributions
2014-05-17 mailR A utility to send emails from R
2014-05-17 micEconAids Demand Analysis with the Almost Ideal Demand System (AIDS)
2014-05-17 pmr Probability Models for Ranking Data
2014-05-17 VNM Multiple objective optimal design
2014-05-16 bigrf Big Random Forests: Classification and Regression Forests for Large Data Sets
2014-05-16 detect Analyzing Wildlife Data with Detection Error
2014-05-16 dynia Fit Dynamic Intervention Model
2014-05-16 FGN Fractional Gaussian Noise and power law decay time series model fitting
2014-05-16 fields Tools for spatial data
2014-05-16 geiger Analysis of evolutionary diversification
2014-05-16 mefa4 Multivariate Data Handling with S4 Classes and Sparse Matrices
2014-05-16 mvctm Multivariate Variance Components Tests for Multilevel Data
2014-05-16 pbapply Adding Progress Bar to '*apply' Functions
2014-05-16 PBSddesolve Solver for Delay Differential Equations
2014-05-16 qqman Q-Q and manhattan plots for GWAS data
2014-05-16 QRM Provides R-language Code to Examine Quantitative Risk Management Concepts
2014-05-16 rspa Adapt numerical records to fit (in)equality restrictions with the Successive Projection Algorithm
2014-05-16 Skillings.Mack The Skillings-Mack test Statistic for block designs with missing observations
2014-05-16 stringi Character string processing facilities
2014-05-15 BiodiversityR GUI for biodiversity, suitability and community ecology analysis
2014-05-15 DoubleExpSeq Differential Exon Usage Test for RNA-Seq data via Empirical Bayes Shrinkage of the Dispersion Parameter
2014-05-15 equateIRT Direct, chain and average equating coefficients with standard errors using IRT methods
2014-05-15 magrittr magrittr - a forward-pipe operator for R
2014-05-15 monitoR Acoustic template detection in R
2014-05-15 rentrez Entrez in R
2014-05-15 SimRAD Simulations to predict the number of loci expected in RAD and GBS approaches
2014-05-15 wq Exploring water quality monitoring data
2014-05-14 ALDqr Quantile Regression Using Asymmetric Laplace Distribution
2014-05-14 erpR Event-related potentials (ERP) analysis, graphics and utility functions
2014-05-14 hydroApps Tools and models for hydrological applications
2014-05-14 imputeR A General Imputation Framework in R
2014-05-14 LogisticDx Diagnostic tests for logistic regression models
2014-05-14 mixtools Tools for analyzing finite mixture models
2014-05-14 phyloTop Phylogenetic Tree Topological Properties Evaluator
2014-05-14 pkgmaker Package development utilities
2014-05-14 rvHPDT Calling haplotype-based and variant-based pedigree disequilibrium test for rare variants in pedigrees
2014-05-14 shp2graph Convert a SpatialLinesDataFrame object to a "igraph-class" object
2014-05-14 tdm A Tool for Therapeutic Drug Monitoring (TDM)
2014-05-13 adegenet adegenet: an R package for the exploratory analysis of genetic and genomic data
2014-05-13 cutoffR CUTOFF: A Spatio-temporal Imputation Method
2014-05-13 dbmss Distance-based measures of spatial structures
2014-05-13 dynatopmodel Implementation of the Dynamic TOPMODEL hydrological model
2014-05-13 emdatr Global Disaster Losses from the EMDAT database Using R
2014-05-13 fSRM Social Relations Analyses with roles ("Family SRM")
2014-05-13 hht The Hilbert-Huang Transform: Tools and Methods
2014-05-13 mets Analysis of Multivariate Event Times
2014-05-13 Morpho Calculations and visualisations related to Geometric Morphometrics
2014-05-13 nplr N-Parameter Logistic Regression
2014-05-13 OptimalCutpoints Computing optimal cutpoints in diagnostic tests
2014-05-13 PCPS PCPS - Principal Coordinates of Phylogenetic Structure
2014-05-13 samplingEstimates Sampling Estimates
2014-05-13 samplingVarEst Sampling Variance Estimation
2014-05-13 SpatialVx Spatial Forecast Verification
2014-05-13 survMisc Miscellaneous functions for survival data
2014-05-13 timetools provides objects and tools to manipulate irregular heterogeneous time data and subtime data
2014-05-13 turfR TURF Analysis for R
2014-05-12 cna Coincidence Analysis (CNA)
2014-05-12 CORElearn Classification, regression, feature evaluation and ordinal evaluation
2014-05-12 dti Analysis of diffusion weighted imaging (DWI) data
2014-05-12 finiteruinprob Computation of the probability of ruin within a finite time horizon
2014-05-12 GWmodel Geographically weighted models
2014-05-12 stilt Separable Gaussian Process Interpolation (Emulation)
2014-05-12 VSURF Variable Selection Using Random Forests
2014-05-11 BerlinData Easy access to Berlin related data
2014-05-11 RQDA R-based Qualitative Data Analysis
2014-05-11 siplab Spatial individual-plant modelling
2014-05-11 TFMPvalue Efficient and accurate P-value computation for Position Weight Matrices
2014-05-11 vines Multivariate Dependence Modeling with Vines
2014-05-10 DALY DALY Calculator - A GUI for stochastic DALY calculation in R
2014-05-10 hpoPlot Functions to plot graphviz style graphs of sets of HPO terms
2014-05-10 recalls Access U.S. Federal Government Recall Data
2014-05-10 rmatio Read and write matlab files
2014-05-10 RPublica ProPublica API Client
2014-05-10 rSCA An R Package for Stepwise Cluster Analysis
2014-05-10 TED Turbulence time series Event Detection and classification
2014-05-09 akmeans Adaptive Kmeans algorithm based on threshold
2014-05-09 blowtorch Constrained optimization via stochastic gradient descent
2014-05-09 DiceDesign Designs of Computer Experiments
2014-05-09 lassoscore high-dimensional inference with the penalized score test
2014-05-09 lgcp Log-Gaussian Cox Process
2014-05-09 msap Statistical analysis for Methylation-sensitive Amplification Polymorphism data
2014-05-09 seasonal R interface to X-13ARIMA-SEATS
2014-05-08 adaptivetau Tau-leaping stochastic simulation
2014-05-08 BayesGESM Bayesian Analysis of Generalized Elliptical Semiparametric Models
2014-05-08 fishMod Fits Poisson-sum-of-Gammas GLMs, Tweedie GLMs, and delta log-normal mdoels
2014-05-08 gendata Generate and modify synthetic datasets
2014-05-08 iRepro Reproducibility for Interval-Censored Data
2014-05-08 outbreaker Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data
2014-05-08 PPtree Projection pursuit classification tree
2014-05-08 ProfessR Grades Setting and Exam Maker
2014-05-08 psgp Projected Spatial Gaussian Process (psgp) methods
2014-05-08 rbundler Rbundler manages an application's dependencies systematically and repeatedly
2014-05-08 Rwave Time-Frequency analysis of 1-D signals
2014-05-08 sensR Thurstonian models for sensory discrimination
2014-05-08 slfm Tools for fitting sparse latent factor model
2014-05-08 ZIM Zero-Inflated Models for Count Time Series with Excess Zeros
2014-05-07 bda Density Estimation for Binned/Weighted Data
2014-05-07 bdvis Biodiversity Data Visualizations
2014-05-07 BlakerCI Blaker's binomial confidence limits
2014-05-07 broman Karl Broman's R code
2014-05-07 CALIBERrfimpute Multiple imputation using MICE and Random Forest
2014-05-07 cancerTiming Estimation of temporal ordering of cancer abnormalities
2014-05-07 CollocInfer Collocation Inference for Dynamic Systems
2014-05-07 Dominance ADI (average dominance index), social network graphs with dual directions, and music notation graph
2014-05-07 freestats Statistical algorithms used in common data mining course
2014-05-07 futile.matrix Random matrix generation and manipulation
2014-05-07 genSurv Generating multi-state survival data
2014-05-07 geonames Interface to www.geonames.org web service
2014-05-07 glm2 Fitting Generalized Linear Models
2014-05-07 gplm Generalized partial linear models (GPLM)
2014-05-07 lava Linear Latent Variable Models
2014-05-07 MAMS Designing Multi-Arm Multi-Stage Studies
2014-05-07 metap Meta-analysis of significance values
2014-05-07 noncensus U.S. Census Regional and Demographic Data
2014-05-07 ocedata Oceanographic datasets for Oce
2014-05-07 PCGSE Principal Component Gene Set Enrichment
2014-05-07 polyCub Cubature over Polygonal Domains
2014-05-07 RDS Respondent-Driven Sampling
2014-05-07 RObsDat Store your observations: R-Interface to the Observations Data Model from QUASHI
2014-05-07 seqminer Efficiently Read Sequence Data (VCF format, BCF format and METAL format) into R
2014-05-07 tawny Provides various portfolio optimization strategies including random matrix theory and shrinkage estimators
2014-05-06 bandit Functions for simple A/B split test and multi-armed bandit analysis
2014-05-06 cooccur Probabilistic Species Co-occurrence Analysis in R
2014-05-06 FLR Fuzzy Logic Rule Classifier
2014-05-06 GA Genetic Algorithms
2014-05-06 HHG Heller-Heller-Gorfine Tests of Independence
2014-05-06 KappaV Calculates "vectorial Kappa", an index of congruence between patchy mosaics
2014-05-06 networkreporting Tools for using network reporting estimators
2014-05-06 RcmdrPlugin.MPAStats R Commander Plug-in for MPA Statistics
2014-05-06 sharpshootR A collection of functions to support soil survey
2014-05-06 tawny.types Common types for tawny
2014-05-06 VBmix Variational Bayesian mixture models
2014-05-05 dams Dams in the United States from the National Inventory of Dams (NID)
2014-05-05 GUTS GUTS: Fast Calculation of the Likelihood of a Stochastic Survival Model
2014-05-05 MCMC.OTU Bayesian analysis of multivariate counts data
2014-05-05 nlmrt Functions for nonlinear least squares solutions
2014-05-05 polyclip Polygon Clipping
2014-05-05 REdaS Companion Package to the Book “R: Einführung durch angewandte Statistik”
2014-05-05 truncSP Semi-parametric estimators of truncated regression models
2014-05-05 wtcrsk Competing risks regression models with covariate-adjusted censoring weight
2014-05-04 DescTools Tools for descriptive statistics
2014-05-04 endorse R Package for Analyzing Endorsement Experiments
2014-05-04 hydrogeo Groundwater data presentation and interpretation
2014-05-03 aqp Algorithms for Quantitative Pedology
2014-05-03 OrdinalLogisticBiplot Biplot representations of ordinal variables
2014-05-03 sglr An R package for power and boundary calculations in pre-licensure vaccine trials using a sequential generalized likelihood ratio test
2014-05-03 spatialprobit Spatial Probit Models
2014-05-02 BalancedSampling Balanced and spatially balanced sampling
2014-05-02 benchmark Benchmark Experiments Toolbox
2014-05-02 GeneFeST Bayesian calculation of gene-specific FST from genomic SNP data
2014-05-02 HK80 Conversion Tools for HK80 Geographical Coordinate System
2014-05-02 irtProb Utilities and Probability Distributions Related to Multidimensional Person Item Response Models
2014-05-02 NominalLogisticBiplot Biplot representations of categorical data
2014-05-02 NPCD Nonparametric Methods for Cognitive Diagnosis
2014-05-02 rcppbugs R binding for cppbugs
2014-05-02 RcppSMC Rcpp bindings for Sequential Monte Carlo
2014-05-02 sqlutils Utilities for working with SQL files
2014-05-01 benford.analysis Benford Analysis for data validation and forensic analytics
2014-05-01 dynsurv Dynamic models for survival data
2014-05-01 JM Joint Modeling of Longitudinal and Survival Data
2014-05-01 lifecontingencies A package to perform actuarial mathematics for life contingencies insurances
2014-05-01 lqmm Linear Quantile Mixed Models
2014-05-01 MultiCNVDetect Multiple Copy Number Variation Detection
2014-05-01 nplplot Plotting linkage and association results
2014-05-01 ocean Biophysical Oceanography Tools
2014-05-01 PTE Personalized Treatment Evaluator
2014-05-01 robustbase Basic Robust Statistics
2014-04-30 bpcp Beta Product Confidence Procedure for Right Censored Data
2014-04-30 CMPControl Control Charts for Conway-Maxwell-Poisson Distribution
2014-04-30 DAAG Data Analysis And Graphics data and functions
2014-04-30 Deducer Deducer: A data analysis GUI for R
2014-04-30 lar History of labour relations package
2014-04-30 matrixpls Matrix-based Partial Least Squares estimation
2014-04-30 midasr Mixed Data Sampling Regression
2014-04-30 PBC Product of Bivariate Copulas (PBC)
2014-04-30 pdfCluster Cluster analysis via nonparametric density estimation
2014-04-30 RgoogleMaps Overlays on Google map tiles in R
2014-04-30 robustHD Robust methods for high-dimensional data
2014-04-30 secr Spatially explicit capture-recapture
2014-04-30 soilDB Soil Database Interface
2014-04-30 SoilR Models of Soil Organic Matter Decomposition
2014-04-30 TSclust Time series clustering utilities
2014-04-29 bayesDem Graphical User Interface for bayesTFR, bayesLife and bayesPop
2014-04-29 BayesLCA Bayesian Latent Class Analysis
2014-04-29 BayesPen Bayesian Penalized Credible Regions
2014-04-29 bbefkr Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density
2014-04-29 diveRsity diveRsity: Genetic diversity partition statistics and Informative locus selection using Fst, Gst, Dest(Jost Chao) G'st and In
2014-04-29 evaluate Parsing and evaluation tools that provide more details than the default
2014-04-29 fastclime A fast solver for parameterized lp problems and constrained l1 minimization approach to sparse precision matrix estimation
2014-04-29 hierNet A Lasso for Hierarchical Interactions
2014-04-29 MBA Multilevel B-spline Approximation
2014-04-29 mpoly Symbolic computation and more with multivariate polynomials
2014-04-29 RMAWGEN RMAWGEN (R Multi-site Auto-regressive Weather GENerator), a package to generate daily time series of precipitation and temperature from monthly mean values
2014-04-29 uniReg Unimodal penalized spline regression using B-splines
2014-04-28 ClickClust Model-Based Clustering of Categorical Sequences
2014-04-28 EasyMARK Utility functions for working with mark-recapture data
2014-04-28 GGEBiplotGUI GGEBiplotGUI: Interactive GGE Biplots in R
2014-04-28 maSAE Mandallaz' model-assisted small area estimators
2014-04-28 mcheatmaps Multiple matrices heatmap visualization
2014-04-28 pxR PC-Axis with R
2014-04-28 TcGSA Time-course Gene Set Analysis
2014-04-28 tvm Time Value of Money Functions
2014-04-28 unmarked Models for Data from Unmarked Animals
2014-04-27 bootstrap Functions for the Book "An Introduction to the Bootstrap"
2014-04-27 mdatools Multivariate data analysis for chemometrics
2014-04-27 MGLM Multivariate Response Generalized Linear Models
2014-04-27 plusser A Google+ Interface for R
2014-04-27 QCA3 Yet another package for Qualitative Comparative Analysis
2014-04-27 solaR Solar Photovoltaic Systems
2014-04-26 coneproj Primal or Dual Cone Projections with Routines for Constrained Regression
2014-04-26 geeM Fit Generalized Estimating Equations
2014-04-26 HistData Data sets from the history of statistics and data visualization
2014-04-26 MVN Multivariate Normality Tests
2014-04-26 Rpdb Read, write, visualize and manipulate PDB files
2014-04-26 RWeka R/Weka interface
2014-04-25 adehabitat Analysis of habitat selection by animals
2014-04-25 chemCal Calibration functions for analytical chemistry
2014-04-25 crossval Generic Functions for Cross Validation
2014-04-25 DandEFA Dandelion Plot for R-mode Exploratory Factor Analysis
2014-04-25 dplR Dendrochronology Program Library in R
2014-04-25 DynClust Denoising and clustering for dynamical image sequence (2D or 3D)+T
2014-04-25 flux Flux rate calculation from dynamic closed chamber measurements
2014-04-25 ICEbox Individual Conditional Expectation Plot Toolbox
2014-04-25 move Visualizing and analyzing animal track data
2014-04-25 optiRum Miscellaneous functions for finance / credit risk analysts
2014-04-25 predfinitepop Predictive Inference on Totals and Averages of Finite Populations Segmented in Planned and Unplanned Domains
2014-04-25 RSvgDevice An R SVG graphics device
2014-04-24 binhf Haar-Fisz functions for binomial data
2014-04-24 clusterfly Explore clustering interactively using R and GGobi
2014-04-24 EvCombR Evidence Combination in R
2014-04-24 falcon Finding Allele-specific Copy Number in Next-Generation Sequencing Data
2014-04-24 MIICD Multiple Imputation for interval censored data regression
2014-04-24 MILC MIcrosimulation Lung Cancer (MILC) model
2014-04-24 mvMORPH Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data
2014-04-24 polywog Bootstrapped Basis Regression with Oracle Model Selection
2014-04-24 Rgbp Gaussian, Poisson, and Binomial Hierarchical Modeling
2014-04-24 rggobi Interface between R and GGobi
2014-04-24 rpubchem rpubchem - Interface to the PubChem Collection
2014-04-24 sand Statistical Analysis of Network Data with R
2014-04-24 SPODT Spatial Oblique Decision Tree
2014-04-24 SurvRegCensCov Weibull Regression for a Right-Censored Endpoint with Interval-Censored Covariate
2014-04-23 classifly Explore classification models in high dimensions
2014-04-23 eHOF Extended and enhanced Hierarchical Logistic Regression models (so called Huisman-Olff-Fresco models)
2014-04-23 IsingFit Fitting Ising models using the eLasso method
2014-04-23 meifly Interactive model exploration using GGobi
2014-04-23 micEconCES Analysis with the Constant Elasticity of Substitution (CES) function
2014-04-23 NormalLaplace The Normal Laplace Distribution
2014-04-23 packHV A few useful functions for statisticians
2014-04-23 phenability Nonparametric Stability Analysis
2014-04-23 reshape Flexibly reshape data
2014-04-23 reshape2 Flexibly reshape data: a reboot of the reshape package
2014-04-23 Rothermel Rothermel fire spread model for R
2014-04-23 SNPassoc SNPs-based whole genome association studies
2014-04-23 tourr Implement tour methods in pure R code
2014-04-22 ads Spatial point patterns analysis
2014-04-22 apmsWAPP Pre- and Postprocessing for AP-MS data analysis based on spectral counts
2014-04-22 Bchron Radiocarbon dating, age-depth modelling, relative sea level rate estimation, and non-parametric phase modelling
2014-04-22 bear Average bioequivalence and bioavailability data analysis tool
2014-04-22 crackR Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures
2014-04-22 DIFlasso A penalty approach to Differential Item Functioning in Rasch Models
2014-04-22 dynamicTreeCut Methods for detection of clusters in hierarchical clustering dendrograms
2014-04-22 FDboost Boosting functional regression models
2014-04-22 ggthemes Extra themes, scales and geoms for ggplot
2014-04-22 igraph Network analysis and visualization
2014-04-22 IQCC Improved Quality Control Charts
2014-04-22 kcirt k-Cube Thurstonian IRT Models
2014-04-22 ltmle Longitudinal Targeted Maximum Likelihood Estimation
2014-04-22 memoise Memoise functions
2014-04-22 micEcon Microeconomic Analysis and Modelling
2014-04-22 micEconSNQP Symmetric Normalized Quadratic Profit Function
2014-04-22 opm Analysing Phenotype Microarray and Growth Curve Data
2014-04-22 polyapost Simulating from the Polya posterior
2014-04-22 profr An alternative display for profiling information
2014-04-22 quipu Summary charts of micro satellite profiles for a set of biological samples
2014-04-22 R2MLwiN Running MLwiN from within R
2014-04-22 R2STATS A GTK GUI for fitting and comparing GLM and GLMM in R
2014-04-22 scales Scale functions for graphics
2014-04-22 sqlshare API for access to SQLShare database
2014-04-22 userfriendlyscience Quantitative analysis made accessible
2014-04-22 VineCopula Statistical inference of vine copulas
2014-04-21 GSAgm Gene Set Analysis using the Gamma Method
2014-04-21 LaF Fast access to large ASCII files
2014-04-20 kolmim An improved evaluation of Kolmogorov's distribution
2014-04-19 multicon Multivariate Constructs
2014-04-19 openNLP Apache OpenNLP Tools Interface
2014-04-19 RApiSerialize R API Serialization
2014-04-19 Reol R interface to the Encyclopedia of Life
2014-04-19 rsm Response-surface analysis
2014-04-19 RTextureMetrics Functions for calculation of texture metrics for Grey Level Co-occurrence Matrices
2014-04-19 rWBclimate A package for accessing World Bank climate data
2014-04-18 AnthropMMD A GUI for Mean Measures of Divergence
2014-04-18 bayesQR Bayesian quantile regression
2014-04-18 Bclim Bayesian Palaeoclimate Reconstruction from Pollen
2014-04-18 regRSM Random Subspace Method (RSM) for linear regression
2014-04-18 SEERaBomb SEER Setup and Use with A-Bomb Data
2014-04-18 st Shrinkage t Statistic and CAT Score
2014-04-17 ATmet Advanced Tools for Metrology
2014-04-17 ModelMap Creates Random Forest and Stochastic Gradient Boosting Models, and applies them to GIS .img files to build detailed prediction maps
2014-04-17 MSQC Multivariate Statistical Quality Control
2014-04-17 poisson.glm.mix Fit high dimensional mixtures of Poisson GLMs
2014-04-17 seqDesign Simulation and group sequential monitoring of randomized multi-arm two-stage Phase IIb/III treatment efficacy trials with time-to-event endpoints
2014-04-16 AFLPsim Hybrid simulation and genome scan for dominant markers
2014-04-16 bigalgebra BLAS routines for native R matrices and big.matrix objects
2014-04-16 fdrtool Estimation of (Local) False Discovery Rates and Higher Criticism
2014-04-16 GEVcdn GEV conditional density estimation network
2014-04-16 greport Graphical Reporting for Clinical Trials
2014-04-16 mizer Multi-species sIZE spectrum modelling in R
2014-04-16 PropCIs Various confidence interval methods for proportions
2014-04-16 psd Adaptive, sine-multitaper power spectral density estimation
2014-04-16 Rdpack Update and manipulate Rd documentation objects
2014-04-16 scidb An R interface to SciDB
2014-04-16 simboot Simultaneous inference for diversity indices
2014-04-15 Blaunet Calculate and Analyze Blau statuses for measuring social distance
2014-04-15 ensembleBMA Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
2014-04-15 etasFLP Estimation of an ETAS model. Mixed FLP (Forward Likelihood Predictive) and ML estimation of non-parametric and parametric components of the ETAS model for earthquake description
2014-04-15 HiLMM Estimation of heritability in high dimensional Linear Mixed Models
2014-04-15 Johnson Johnson Transformation
2014-04-15 mapStats Geographic display of survey data statistics
2014-04-15 MPCI Multivariate Process Capability Indices (MPCI)
2014-04-15 NBPSeq Negative Binomial Models for RNA-Sequencing Data
2014-04-15 RGIFT Create quizzes in GIFT Format
2014-04-15 scar Shape-Constrained Additive Regression: a Maximum Likelihood Approach
2014-04-15 scio Sparse Column-wise Inverse Operator
2014-04-14 AMORE A MORE flexible neural network package
2014-04-14 binda Multi-Class Discriminant Analysis using Binary Predictors
2014-04-14 DivE Diversity Estimator
2014-04-14 LOGICOIL LOGICOIL: multi-state prediction of coiled-coil oligomeric state
2014-04-14 longitudinal Analysis of Multiple Time Course Data
2014-04-14 multiPIM Variable Importance Analysis with Population Intervention Models
2014-04-14 pumilioR Pumilio in R
2014-04-14 QuasiSeq Analyzing RNA sequence count tables using quasi-likelihood
2014-04-14 soundecology Soundscape ecology
2014-04-13 aftgee Accelerated Failure Time Model with Generalized Estimating Equations
2014-04-13 compound.Cox Regression estimation based on the compound covariate method under the Cox proportional hazard model
2014-04-13 FGSG Feature grouping and selection over an undirected graph
2014-04-13 hydroPSO Particle Swarm Optimisation, with focus on Environmental Models
2014-04-13 MCMC.qpcr Bayesian analysis of qRT-PCR data
2014-04-13 RcppBDT Rcpp bindings for the Boost Date_Time library
2014-04-13 SensoMineR Sensory data analysis with R
2014-04-12 BootPR Bootstrap Prediction Intervals and Bias-Corrected Forecasting
2014-04-12 earlywarnings Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
2014-04-12 fastM Fast Computation of Multivariate M-estimators
2014-04-12 Rcsdp R interface to the CSDP semidefinite programming library
2014-04-11 extWeibQuant Estimate the lower extreme quantile with the censored Weibull MLE and censored Weibull Mixture
2014-04-11 foreach Foreach looping construct for R
2014-04-11 G2Sd Grain-size Statistics and Description of Sediment
2014-04-11 gRapfa Acyclic Probabilistic Finite Automata
2014-04-11 iterators Iterator construct for R
2014-04-11 rvTDT population control weighted rare-variants TDT
2014-04-11 sequences Generic and biological sequences
2014-04-10 archetypes Archetypal Analysis
2014-04-10 CatDyn Fishery Stock Assessment by Catch Dynamic Models
2014-04-10 dataview Human readable data presentation
2014-04-10 gam Generalized Additive Models
2014-04-10 gridSVG Export grid graphics as SVG
2014-04-10 grt General Recognition Theory
2014-04-10 ora Convenient Tools for Working with Oracle Databases
2014-04-10 orca Orca: Counting graphlet orbits in sparse graphs
2014-04-10 PSMix Population structure inference using mixture model
2014-04-10 RcppCNPy Rcpp bindings for NumPy files
2014-04-10 seqMeta An R package for meta-analyzing region-based tests of rare DNA variants
2014-04-10 toaster analytics and visualization with Aster Database
2014-04-09 bit A class for vectors of 1-bit booleans
2014-04-09 bit64 A S3 class for vectors of 64bit integers
2014-04-09 cuttlefish.model An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model
2014-04-09 drmdel Dual empirical likelihood inference under density ratio models in the presence of multiple samples
2014-04-09 ff memory-efficient storage of large data on disk and fast access functions
2014-04-09 GHQp Gauss Hermite Quadrature with pruning
2014-04-09 metaLik Likelihood inference in meta-analysis and meta-regression models
2014-04-09 PBSadmb ADMB for R Using Scripts or GUI
2014-04-09 Quandl Quandl Data Connection
2014-04-09 sp classes and methods for spatial data
2014-04-09 spsmooth spsmooth: An Extension Package for 'mgcv'
2014-04-09 ThreeWay Three-way component analysis
2014-04-09 TSjson TSdbi extension for importing time series from web sources via JSON
2014-04-08 bcrm Bayesian continual reassessment method (CRM) designs for Phase I dose-finding trials
2014-04-08 coxphw Weighted Estimation in Cox Regression
2014-04-08 DBKGrad Discrete Beta Kernel Graduation of Mortality Data
2014-04-08 Ecfun Functions for Ecdat
2014-04-08 EWGoF Goodness-of-fit tests for the Exponential and two-parameter Weibull distributions
2014-04-08 rTensor Tools for tensor analysis and decomposition
2014-04-08 sequenza Analysis and visualization of tumor genome sequencing data
2014-04-08 smoothHR Smooth Hazard Ratio Curves taking a Reference Value
2014-04-08 spectral.methods Singular Spectrum Analysis (SSA) tools for time series analysis
2014-04-08 TSsql Generic SQL helper functions for TSdbi SQL plugins
2014-04-07 confreq Configural Frequencies Analysis Using Loglinear Modeling
2014-04-07 devtools Tools to make developing R code easier
2014-04-07 disclap Discrete Laplace Exponential Family
2014-04-07 MMS Fixed effects Selection in Linear Mixed Models
2014-04-07 ncdf.tools Easier ncdf file handling
2014-04-07 NPS Convenience functions and tests for working with the Net Promoter Score (NPS)
2014-04-07 PBSmodelling GUI Tools Made Easy: Interact with Models, Explore Data, Give Dynamic Presentations
2014-04-07 popRange popRange: A spatially and temporally explicit forward genetic simulator
2014-04-07 rotations Tools for Working with Rotation Data
2014-04-07 sotkanet Sotkanet R Tools
2014-04-07 tuneR Analysis of music and speech
2014-04-06 gdata Various R programming tools for data manipulation
2014-04-05 acss.data Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)
2014-04-05 argparse Command line optional and positional argument parser
2014-04-05 bbemkr Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error
2014-04-05 isotonic.pen Penalized Isotonic Regression in one and two dimensions
2014-04-05 nonrandom Stratification and matching by the propensity score
2014-04-05 PBSmapping Mapping Fisheries Data and Spatial Analysis Tools
2014-04-05 seacarb seawater carbonate chemistry with R
2014-04-04 aRpsDCA Arps Decline Curve Analysis in R
2014-04-04 CARBayes Spatial areal unit modelling
2014-04-04 EasyABC EasyABC: performing efficient approximate Bayesian computation sampling schemes
2014-04-04 EcoHydRology A community modeling foundation for Eco-Hydrology
2014-04-04 ERP Significance analysis of Event-Related Potentials data
2014-04-04 fts R interface to tslib (a time series library in c++)
2014-04-04 httpuv HTTP and WebSocket server library
2014-04-04 lattice Lattice Graphics
2014-04-04 mombf Moment and Inverse Moment Bayes factors
2014-04-04 neuroim neuroim: R software for reading, writing and representing brain imaging data
2014-04-04 optparse Command line option parser
2014-04-04 palinsol Insolation for palaeoclimate studies
2014-04-04 signal Signal processing
2014-04-03 climdex.pcic PCIC implementation of Climdex routines
2014-04-03 csampling Functions for Conditional Simulation in Regression-Scale Models
2014-04-03 doRedis Foreach parallel adapter for the rredis package
2014-04-03 findpython Python tools to find an acceptable python binary
2014-04-03 JBTools JBs tools and helper functions
2014-04-03 marg Approximate marginal inference for regression-scale models
2014-04-03 Methplot Visualize the methylation patterns
2014-04-03 nlreg Higher Order Inference for Nonlinear Heteroscedastic Models
2014-04-03 pcg Preconditioned Conjugate Gradient Algorithm for solving Ax=b
2014-04-03 rDVR The rDVR package allows you to start stop and save a video server from within R
2014-04-03 TrackReconstruction Reconstruct animal tracks from magnetometer, accelerometer, depth and optional speed data
2014-04-02 clue Cluster ensembles
2014-04-02 depmix Dependent Mixture Models
2014-04-02 fat2Lpoly Two-locus Family-based Association Test with Polytomic Outcome
2014-04-02 fifer A collection of miscellaneous functions
2014-04-02 gstat spatial and spatio-temporal geostatistical modelling, prediction and simulation
2014-04-02 kimisc Kirill's miscellaneous functions
2014-04-02 lpint Local polynomial estimators of intensity function or its derivatives
2014-04-02 lsa Latent Semantic Analysis
2014-04-02 mcmc Markov Chain Monte Carlo
2014-04-02 OAIHarvester Harvest Metadata Using OAI-PMH v2.0
2014-04-02 potts Markov Chain Monte Carlo for Potts Models
2014-04-02 rankhazard Rank-hazard plots
2014-04-02 Rchoice Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters
2014-04-02 relations Data Structures and Algorithms for Relations
2014-04-02 Rfacebook Access to Facebook API via R
2014-04-02 skmeans Spherical k-Means Clustering
2014-04-02 slam Sparse Lightweight Arrays and Matrices
2014-04-02 sybilccFBA Cost Constrained FLux Balance Analysis: MetabOlic Modeling with ENzyme kineTics (MOMENT)
2014-04-02 ump Uniformly Most Powerful Tests
2014-04-01 GenOrd Simulation of ordinal and discrete variables with given correlation matrix and marginal distributions
2014-04-01 kyotil Utility Functions by Youyi & Krisz
2014-04-01 paramlink Parametric linkage analysis in R
2014-04-01 tosls Instrumental Variables Two Stage Least Squares estimation
2014-03-31 abd The Analysis of Biological Data
2014-03-31 evdbayes Bayesian Analysis in Extreme Value Theory
2014-03-31 factas Data Mining Methods for Data Streams
2014-03-31 geoscale Geological timescale plot
2014-03-31 nlme Linear and Nonlinear Mixed Effects Models
2014-03-31 r2d2 Bivariate (Two-Dimensional) Confidence Region and Frequency Distribution
2014-03-31 RImageJROI Read ImageJ Region of Interest (ROI) files
2014-03-31 sparsediscrim Sparse and Regularized Discriminant Analysis
2014-03-31 treemap Treemap visualization
2014-03-31 WrightMap Wright Map: IRT item-person map with ConQuest integration
2014-03-30 Ckmeans.1d.dp Optimal k-means clustering for one-dimensional data
2014-03-30 crank Completing ranks
2014-03-30 partsm Periodic Autoregressive Time Series Models
2014-03-30 ptw Parametric Time Warping
2014-03-30 rcdd rcdd (Computational Geometry)
2014-03-30 trust Trust Region Optimization
2014-03-30 TunePareto Multi-objective parameter tuning for classifiers
2014-03-28 aCRM Convenience functions for analytical Customer Relationship Management
2014-03-28 boot Bootstrap Functions (originally by Angelo Canty for S)
2014-03-28 ddalpha DDalpha-classifier, depth-calculating methods and associated functions
2014-03-28 egcm Engle-Granger cointegration models
2014-03-28 EMA Easy Microarray data Analysis
2014-03-28 FacPad Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment
2014-03-28 fanovaGraph Building Kriging models from FANOVA graphs
2014-03-28 FinTS Companion to Tsay (2005) Analysis of Financial Time Series
2014-03-28 foreign Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ..
2014-03-28 GraphPCA GraphPCA, Graphical tools of histogram PCA
2014-03-28 invGauss Threshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data
2014-03-28 MMMS Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification
2014-03-28 NHMMfdr Compute FDR under dependence using NHMM
2014-03-28 nnet Feed-forward Neural Networks and Multinomial Log-Linear Models
2014-03-28 opmdata Example data for analysing OmniLog(R) Phenotype Microarray data
2014-03-28 pdmod Proximal/distal modeling framework for Pavlovian conditioning phenomena
2014-03-28 pks Probabilistic Knowledge Structures
2014-03-28 polyaAeppli Implementation of the Polya-Aeppli distribution
2014-03-28 rpart Recursive Partitioning and Regression Trees
2014-03-28 simMSM Simulation of event histories based on nonlinear hazard rate functions and potentially nonlinear covariate effects
2014-03-28 spatial Functions for Kriging and Point Pattern Analysis
2014-03-27 biwavelet Conduct univariate and bivariate wavelet analyses
2014-03-27 CDVine Statistical inference of C- and D-vine copulas
2014-03-27 etm Empirical Transition Matrix
2014-03-27 iFad An integrative factor analysis model for drug-pathway association inference
2014-03-27 MetaSKAT Meta analysis for SNP-set (Sequence) Kernel Association Test
2014-03-27 rstudioapi Safely access the RStudio API
2014-03-27 synchronicity Boost mutex functionality for R
2014-03-27 TeachingSampling Selection of samples and parameter estimation in finite population
2014-03-27 wesanderson A Wes Anderson Palette Generator
2014-03-26 fclust Fuzzy clustering
2014-03-26 meboot Maximum Entropy Bootstrap for Time Series
2014-03-26 MPDiR Data sets and scripts for Modeling Psychophysical Data in R
2014-03-26 msgl High dimensional multiclass classification using sparse group lasso
2014-03-26 parfm Parametric Frailty Models
2014-03-26 Rcolombos Interface to Colombos Compendia using the exposed REST API
2014-03-26 Rphylip An R interface for PHYLIP
2014-03-26 SubLasso Gene selection using Lasso for Microarray data with user-defined genes fixed in model
2014-03-25 BayesVarSel Bayesian Variable selection in Linear Models
2014-03-25 bipartite Visualising bipartite networks and calculating some (ecological) indices
2014-03-25 cem Coarsened Exact Matching
2014-03-25 clValid Validation of Clustering Results
2014-03-25 CMF Collective matrix factorization
2014-03-25 Devore7 Data sets from Devore's "Prob and Stat for Eng (7th ed)"
2014-03-25 GenSA R functions for Generalized Simulated Annealing
2014-03-25 gRain Graphical Independence Networks
2014-03-25 ivfixed Instrumental fixed effect panel data model
2014-03-25 kml3d K-means for joint Longitudinal data
2014-03-25 lsgl Linear sparse group lasso
2014-03-25 mcga Machine coded genetic algorithms for real-valued optimization problems
2014-03-25 RProtoBuf R Interface to the Protocol Buffers API
2014-03-24 ccgarch Conditional Correlation GARCH models
2014-03-24 CCpop One and two locus GWAS of binary phenotype with case-control-population design
2014-03-24 Geneland Detection of structure from multilocus genetic data
2014-03-24 ISOcodes Selected ISO codes
2014-03-24 kml K-means for Longitudinal data
2014-03-24 lmom L-moments
2014-03-24 lsdv Least square dummy variable regression
2014-03-24 ouch Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
2014-03-24 OutlierDC Outlier Detection using quantile regression for Censored Data
2014-03-24 R2GUESS Wrapper functions for GUESS
2014-03-24 rFerns Random ferns classifier
2014-03-24 sglOptim Sparse group lasso generic optimizer
2014-03-23 freqparcoord Novel Methods for Parallel Coordinates
2014-03-23 gRbase A package for graphical modelling in R
2014-03-23 hybridEnsemble Build, deploy and evaluate a Hybrid Ensemble
2014-03-23 kernelFactory Kernel Factory: An ensemble of kernel Machines
2014-03-23 OutlierDM Outlier detection for replicated high-throughput data
2014-03-22 BiDimRegression Calculates the bidimensional regression between two 2D configurations
2014-03-22 dna Differential Network Analysis
2014-03-22 fbati Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
2014-03-22 HGNChelper Handy functions for working with HGNC gene symbols and Affymetrix probeset identifiers
2014-03-22 kintone kintone REST client package for R
2014-03-22 RND Risk Neutral Density Extraction Package
2014-03-22 Unicode Unicode data and utilities
2014-03-21 caschrono Séries temporelles avec R - Méthodes et cas
2014-03-21 ivpack Instrumental Variable Estimation
2014-03-21 MARSS Multivariate Autoregressive State-Space Modeling
2014-03-21 PwrGSD Power in a Group Sequential Design
2014-03-21 Rmixmod An interface for MIXMOD
2014-03-21 Stack Stylized concatenation of data.frames or ffdfs
2014-03-20 AmpliconDuo Statistical Analysis Of Amplicon Data Of The Same Sample To Identify Artefacts
2014-03-20 deepnet deep learning toolkit in R
2014-03-20 EloRating Animal Dominance Hierarchies by Elo Rating
2014-03-20 formula.tools Utilities for working with formulas, expressions, calls and other R objects
2014-03-20 gIPFrm Generalized Iterative Proportional Fitting for Relational Models
2014-03-20 kaps K-Adaptive Partitioning for Survival data
2014-03-20 koRpus An R Package for Text Analysis
2014-03-20 longitudinalData Longitudinal Data
2014-03-20 MasterBayes ML and MCMC Methods for Pedigree Reconstruction and Analysis
2014-03-20 Paneldata Linear models for panel data
2014-03-20 phylobase Base package for phylogenetic structures and comparative data
2014-03-20 pspearman Spearman's rank correlation test
2014-03-20 raters An index of inter-rater agreement among a set of raters
2014-03-20 samplesize4surveys Sample size calculations for complex surveys
2014-03-20 shinyBS Twitter Bootstrap Components for Shiny
2014-03-19 BIPOD BIPOD (Bayesian Inference for Partially Observed diffusions)
2014-03-19 DBFTest DBF test of no difference between groups
2014-03-19 extrafont Tools for using fonts
2014-03-19 fontcm Computer Modern font for use with extrafont package
2014-03-19 geospacom Helper package to facilitate the generation of distance matrices used in the package spacom
2014-03-19 latentnet Latent position and cluster models for statistical networks
2014-03-19 MESS Miscellaneous esoteric statistical scripts
2014-03-19 PKreport A reporting pipeline for checking population pharmacokinetic model assumption
2014-03-19 PoisNor Simultaneous generation of multivariate data with Poisson and normal marginals
2014-03-19 randtests Testing randomness in R
2014-03-19 RcmdrPlugin.SCDA Rcmdr plugin for designing and analyzing single-case experiments
2014-03-19 resemble Regression and similarity evaluation for memory-based learning in spectral chemometrics
2014-03-18 brainR Helper functions to misc3d and rgl packages for brain imaging
2014-03-18 comato Analysis of Concept Maps
2014-03-18 DSsim Distance Sampling Simulations
2014-03-18 NMF Algorithms and framework for Nonnegative Matrix Factorization (NMF)
2014-03-18 RSDA RSDA - R to Symbolic Data Analysis
2014-03-18 TPmsm Estimation of transitions probabilities in multistate models
2014-03-18 tractor.base A package for reading, manipulating and visualising magnetic resonance images
2014-03-18 twang Toolkit for Weighting and Analysis of Nonequivalent Groups
2014-03-18 WriteXLS Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX) files
2014-03-17 astsa Applied Statistical Time Series Analysis
2014-03-17 crqa Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series
2014-03-17 date Functions for handling dates
2014-03-17 EBS Exact Bayesian Segmentation
2014-03-17 influence.ME Tools for detecting influential data in mixed effects models
2014-03-17 IPMpack Builds and analyses Integral Projection Models (IPMs)
2014-03-17 Multiclasstesting Performance of N-ary classification testing
2014-03-17 plot3Drgl Plotting multi-dimensional data - using rgl
2014-03-17 polynom A collection of functions to implement a class for univariate polynomial manipulations
2014-03-17 ProjectTemplate Automates the creation of new statistical analysis projects
2014-03-17 semiArtificial Generator of semi-artificial data
2014-03-17 StatDataML implementation of the StatDataML proposal
2014-03-17 uplift Uplift Modeling
2014-03-16 blme Bayesian Linear Mixed-Effects Models
2014-03-16 darch Package for deep architectures and Restricted-Bolzmann-Machines
2014-03-16 dendextendRcpp Faster dendrogram manipulation using Rcpp
2014-03-16 GEVStableGarch ARMA-GARCH/APARCH models with GEV and stable distributions
2014-03-16 logmult Log-multiplicative models, including association models
2014-03-15 ModelGood Validation of risk prediction models
2014-03-15 plot2groups Plot scatter points for two groups of values
2014-03-15 sbioPN sbioPN: Simulation of deterministic and stochastic spatial biochemical reaction networks using Petri Nets
2014-03-15 sqldf Perform SQL Selects on R Data Frames
2014-03-15 ssmrob Robust estimation and inference in sample selection models
2014-03-14 FAOSTAT A complementary package to the FAOSTAT database and the Statistical Yearbook of the Food and Agricultural Organization of the United Nations
2014-03-14 gof Model-diagnostics based on cumulative residuals
2014-03-14 metaRNASeq Meta-analysis of RNA-seq data
2014-03-14 pensim Simulation of high-dimensional data and parallelized repeated penalized regression
2014-03-14 qtlnet Causal Inference of QTL Networks
2014-03-14 rgauges R wrapper to Gaug.es API
2014-03-14 rgpui UI for the RGP genetic programming framework
2014-03-14 solr General purpose R interface to Solr
2014-03-14 ykmeans K-means using a target variable
2014-03-13 doSNOW Foreach parallel adaptor for the snow package
2014-03-13 lfe Linear Group Fixed Effects
2014-03-13 PharmPow Pharmacometric Power calculations for mixed study designs
2014-03-12 binomlogit Efficient MCMC for Binomial Logit Models
2014-03-12 gmt Interface between GMT Map-Making Software and R
2014-03-12 GOsummaries Word cloud summaries of GO enrichment analysis
2014-03-12 itertools Iterator Tools
2014-03-12 LIStest Tests of independence based on the Longest Increasing Subsequence
2014-03-12 lllcrc Local Log-linear Models for Capture-Recapture
2014-03-12 MVA An Introduction to Applied Multivariate Analysis with R
2014-03-12 normtest Tests for Normality
2014-03-12 plotMCMC MCMC Diagnostic Plots
2014-03-12 reportr A general message and error reporting system
2014-03-12 resample Resampling functions
2014-03-12 scape Statistical Catch-at-Age Plotting Environment
2014-03-12 sparsenet Fit sparse linear regression models via nonconvex optimization
2014-03-11 arulesViz Visualizing Association Rules and Frequent Itemsets
2014-03-11 bayesmix Bayesian Mixture Models with JAGS
2014-03-11 gemtc GeMTC network meta-analysis
2014-03-11 MEMSS Data sets from Mixed-effects Models in S
2014-03-11 mlmRev Examples from Multilevel Modelling Software Review
2014-03-11 performanceEstimation An infra-structure for performance estimation of predictive models
2014-03-11 plsRbeta Partial least squares Regression for beta regression models
2014-03-11 rgexf An R package to build GEXF graph files
2014-03-11 rmaf Refined Moving Average Filter
2014-03-11 SASmixed Data sets from "SAS System for Mixed Models"
2014-03-11 seriation Infrastructure for seriation
2014-03-10 aroma.affymetrix Analysis of large Affymetrix microarray data sets
2014-03-10 cplm Compound Poisson linear models
2014-03-10 DOBAD Analysis of Discretely Observed linear Birth-And-Death(-and-immigration) Markov Chains
2014-03-10 fishmethods Fishery Science Methods and Models in R
2014-03-10 hqmisc Miscellaneous convenience functions and dataset
2014-03-10 hrr Horizontal rule for the R language
2014-03-10 LambertW Analyze and Gaussianize skewed, heavy-tailed data
2014-03-10 metRology Support for metrological applications
2014-03-10 MixMAP Implements the MixMAP algorithm
2014-03-10 pt Computational models for prospect theory and other theories of risky decision making
2014-03-10 RcppOctave Seamless Interface to Octave – and Matlab
2014-03-10 relax relax – R Editor for Literate Analysis and lateX
2014-03-10 ss3sim Fisheries stock assessment simulation testing with Stock Synthesis
2014-03-10 timeordered Time-ordered and time-aggregated network analyses
2014-03-10 XML2R EasieR XML data collection
2014-03-09 BurStFin Burns Statistics Financial
2014-03-09 gpairs gpairs: The Generalized Pairs Plot
2014-03-09 gRapHD Efficient selection of undirected graphical models for high-dimensional datasets
2014-03-09 micromapST Linked Micromap Plots for U. S. States
2014-03-09 regsubseq Detect and Test Regular Sequences and Subsequences
2014-03-09 RQuantLib R interface to the QuantLib library
2014-03-09 SGCS Spatial Graph based Clustering Summaries for spatial point patterns
2014-03-09 spatialsegregation Segregation measures for multitype spatial point patterns
2014-03-09 tmle Targeted Maximum Likelihood Estimation
2014-03-08 adehabitatHR Home range Estimation
2014-03-08 adehabitatHS Analysis of habitat selection by animals
2014-03-08 aroma.core Core methods and classes used by aroma.* packages part of The Aroma Framework
2014-03-08 depend.truncation Statistical inference for parametric and semiparametric models based on dependently truncated data
2014-03-08 EnviroStat Statistical analysis of environmental space-time processes
2014-03-08 ffbase Basic statistical functions for package ff
2014-03-08 FunChisq Nonparametric functional chi-square tests
2014-03-08 gSeg Graph-Based Change-Point Detection (g-Segmentation)
2014-03-07 Anthropometry Statistical methods for anthropometric data oriented towards the ergonomic design of products
2014-03-07 conicfit Algorithms for fitting circles, ellipses and conics based on the work by Prof. Nikolai Chernov
2014-03-07 CPHshape Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model
2014-03-07 doRNG Generic Reproducible Parallel Backend for foreach Loops
2014-03-07 dr Methods for dimension reduction for regression
2014-03-07 geneSignatureFinder A Gene-signatures finder tools
2014-03-07 GLDEX Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods
2014-03-07 gptk Gaussian Processes Tool-Kit
2014-03-07 Jmisc Julian Miscellaneous Function
2014-03-07 lavaan Latent Variable Analysis
2014-03-07 Momocs Shape Analysis of Outlines
2014-03-07 RAPIDR RAPIDR: Reliable Accurate Prenatal non-Invasive Diagnosis R package
2014-03-07 RMediation An R Package for Mediation Analysis Confidence Intervals
2014-03-07 SixSigma Six Sigma Tools for Quality and Process Improvement
2014-03-07 svd Interfaces to various state-of-art SVD and eigensolvers
2014-03-07 svyPVpack A package for complex surveys including plausible values
2014-03-07 VBLPCM Variational Bayes Latent Position Cluster Model for networks
2014-03-06 bdpv Inference and design for predictive values in binary diagnostic tests
2014-03-06 covreg A simultaneous regression model for the mean and covariance
2014-03-06 eiwild Ecological Inference with individual and aggregate data
2014-03-06 flowfield Forecasts future values of a univariate time series
2014-03-06 geometry Mesh generation and surface tesselation
2014-03-06 HIBAG HIBAG – HLA Genotype Imputation with Attribute Bagging
2014-03-06 mixRasch Mixture Rasch Models with JMLE
2014-03-06 multiDimBio Multivariate Analysis and Visualization for Biological Data
2014-03-06 MultiOrd Generation of multivariate ordinal variates
2014-03-06 polySegratio Simulate and test marker dosage for dominant markers in autopolyploids
2014-03-06 polySegratioMM Bayesian mixture models for marker dosage in autopolyploids
2014-03-06 rjags Bayesian graphical models using MCMC
2014-03-06 rmongodb R-MongoDB driver
2014-03-06 rngtools Utility functions for working with Random Number Generators
2014-03-06 rrBLUP Ridge regression and other kernels for genomic selection
2014-03-06 VdgRsm Variance Dispersion and Fraction of Design Space Plots
2014-03-05 aws Adaptive Weights Smoothing
2014-03-05 awsMethods Class and Methods definitions for packages aws, adimpro, fmri, dwi
2014-03-05 bagRboostR Ensemble bagging and boosting classifiers
2014-03-05 exactci Exact P-values and Matching Confidence Intervals for simple Discrete Parametric Cases
2014-03-05 expectreg Expectile and Quantile Regression
2014-03-05 FDRreg False discovery rate regression
2014-03-05 gWidgets2 Rewrite of gWidgets API for simplified GUI construction
2014-03-05 hbim Hill/Bliss Independence Model for Combination Vaccines
2014-03-05 homals Gifi Methods for Optimal Scaling
2014-03-05 inarmix Mixture models for longitudinal count data
2014-03-05 partDSA Partitioning using deletion, substitution, and addition moves
2014-03-05 picante R tools for integrating phylogenies and ecology
2014-03-05 rebird Interface to eBird
2014-03-05 StatRank Statistical Rank Aggregation: Inference, Evaluation, and Visualization
2014-03-05 xkcd Plotting ggplot2 graphics in a XKCD style
2014-03-04 bigpca PCA, transpose and multicore functionality for big.matrix objects
2014-03-04 bioPN Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets
2014-03-04 factorplot factorplot
2014-03-04 insol Solar Radiation
2014-03-04 iqLearn Interactive Q-learning
2014-03-04 leiv Bivariate linear errors-in-variables estimation
2014-03-04 ridge Ridge Regression with automatic selection of the penalty parameter
2014-03-04 ROracle OCI based Oracle database interface for R
2014-03-04 SamplingStrata Optimal stratification of sampling frames for multipurpose sampling surveys
2014-03-04 sesem Spatially explicit structural equation modeling
2014-03-04 Table1Heatmap Table 1 Heatmap
2014-03-04 tmvtnorm Truncated Multivariate Normal and Student t Distribution
2014-03-04 weights Weighting and Weighted Statistics
2014-03-03 bestglm Best Subset GLM
2014-03-03 cudaBayesreg CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
2014-03-03 ForeCA ForeCA - Forecastable Component Analysis
2014-03-03 ICGE Estimation of number of clusters and identification of atypical units
2014-03-03 neldermead R port of the Scilab neldermead module
2014-03-03 parboost Distributed Model-Based Boosting
2014-03-03 propagate Propagation of Uncertainty
2014-03-03 RADami R Package for Phylogenetic Analysis of RADseq Data
2014-03-03 simFrame Simulation framework
2014-03-03 SSsimple State space models
2014-03-03 svIDE SciViews GUI API - IDE and code editor functions
2014-03-03 tree Classification and regression trees
2014-03-03 visualFields Statistical methods for visual fields
2014-03-03 widals Weighting by Inverse Distance with Adaptive Least Squares for Massive Space-Time Data
2014-03-02 expands ExPANdS
2014-03-02 fCertificates fCertificates - Basics of Certificates and Structured Products Valuation
2014-03-02 optimbase R port of the Scilab optimbase module
2014-03-02 partitionMetric Compute a distance metric between two partitions of a set
2014-03-02 pastecs Package for Analysis of Space-Time Ecological Series
2014-03-02 SciViews SciViews GUI API - Main package
2014-03-02 SimCorMultRes Simulates Correlated Multinomial Responses
2014-03-02 svDialogs SciViews GUI API - Dialog boxes
2014-03-02 svDialogstcltk SciViews GUI API - Dialog boxes using Tcl/Tk
2014-03-02 svGUI SciViews GUI API - Functions to manage GUIs
2014-03-02 svHttp SciViews GUI API - R HTTP server
2014-03-02 svKomodo SciViews GUI API - Functions to interface with Komodo Edit/IDE
2014-03-02 svMisc SciViews GUI API - Miscellaneous functions
2014-03-02 svSocket SciViews GUI API - R Socket Server
2014-03-02 svTools SciViews GUI API - Tools (wrapper for packages tools and codetools)
2014-03-02 svUnit SciViews GUI API - Unit testing
2014-03-02 svWidgets SciViews GUI API - Widgets & Windows
2014-03-02 tcltk2 Tcl/Tk Additions
2014-03-02 zooimage Analysis of numerical zooplankton images
2014-03-01 amap Another Multidimensional Analysis Package
2014-03-01 amen Additive and multiplicative effects modeling of networks and relational data
2014-03-01 aqr Interface methods to use with an ActiveQuant Master Server
2014-03-01 BaSTA A package for estimating age-specific survival from incomplete capture-recapture/recovery data
2014-03-01 CoImp Copula based imputation method
2014-03-01 mcll Monte Carlo Local Likelihood Estimation
2014-03-01 MTS All-purpose toolkit for analyzing multivariate time series (MTS) and estimating multivariate volatility models
2014-03-01 RAHRS Data fusion filters for Attitude Heading Reference System (AHRS) with several variants of the Kalman filter and the Mahoney and Madgwick filters
2014-02-28 anchors Statistical analysis of surveys with anchoring vignettes
2014-02-28 bPeaks bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
2014-02-28 doMC Foreach parallel adaptor for the multicore package
2014-02-28 doParallel Foreach parallel adaptor for the parallel package
2014-02-28 huge High-dimensional Undirected Graph Estimation
2014-02-28 morgenstemning Color schemes compatible with red-green color perception difficulties
2014-02-28 networkDynamic Dynamic Extensions for Network Objects
2014-02-28 rpanel Simple interactive controls for R using the tcltk library
2014-02-28 stpp Space-Time Point Pattern simulation, visualisation and analysis
2014-02-27 aLFQ An R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data
2014-02-27 aroma.apd A probe-level data file format used by aroma.affymetrix [DEPRECATED]
2014-02-27 cts Continuous Time Autoregressive Models
2014-02-27 data.table Extension of data.frame
2014-02-27 GDELTtools Download, slice, and normalize GDELT data
2014-02-27 isocir Isotonic Inference for Circular data
2014-02-27 ndl Naive Discriminative Learning
2014-02-27 panelAR Estimation of Linear AR(1) Panel Data Models with Cross-Sectional Heteroskedasticity and/or Correlation
2014-02-27 R.huge Methods for accessing huge amounts of data [DEPRECATED]
2014-02-27 SDD Serial Dependence Diagrams
2014-02-27 sdnet Soft Discretization-based Bayesian Network Inference
2014-02-27 zoo S3 Infrastructure for Regular and Irregular Time Series (Z's ordered observations)
2014-02-26 ALKr Generate Age-Length Keys for fish populations
2014-02-26 FPDC PD-clustering and factor PD-clustering
2014-02-26 pencopula Flexible Copula Density Estimation with Penalized Hierarchical B-Splines
2014-02-26 plyr Tools for splitting, applying and combining data
2014-02-26 reutils Talk to the NCBI EUtils
2014-02-26 RSpincalc Package for converting between attitude representations: DCM, Euler angles, Quaternions, and Euler vectors
2014-02-26 rvgtest Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators
2014-02-26 scrypt scrypt key derivation functions for R
2014-02-26 seas Seasonal analysis and graphics, especially for climatology
2014-02-26 snp.plotter snp.plotter
2014-02-25 BiSEp Toolkit to identify synthetic lethality and cell line resistance relationships based on bimodality in gene expression data
2014-02-25 CTT Classical Test Theory Functions
2014-02-25 HMMpa Analysing accelerometer data using hidden Markov models
2014-02-25 lessR Less Code, More Results
2014-02-25 MatrixEQTL MatrixEQTL: Ultra fast eQTL analysis via large matrix operations
2014-02-25 pendensity Density Estimation with a Penalized Mixture Approach
2014-02-25 R.oo R object-oriented programming with or without references
2014-02-25 saemix Stochastic Approximation Expectation Maximization (SAEM) algorithm
2014-02-25 SimuChemPC Simulation process of 4 selection methods in predicting chemical potent compounds
2014-02-25 tspmeta Instance feature calculation and evolutionary instance generation for the traveling salesman problem
2014-02-24 accrual Bayesian Accrual Prediction
2014-02-24 biom An interface package (beta) for the BIOM file format
2014-02-24 catdata Categorical Data
2014-02-24 compare Comparing Objects for Differences
2014-02-24 FinCal Time Value of Money, time series analysis and Computational Finance
2014-02-24 fractaldim Estimation of fractal dimensions
2014-02-24 graphicsQC Quality Control for Graphics in R
2014-02-24 gridBase Integration of base and grid graphics
2014-02-24 GSM Gamma Shape Mixture
2014-02-24 lmodel2 Model II Regression
2014-02-24 msir Model-based Sliced Inverse Regression
2014-02-24 MSwM Fitting Markov Switching Models
2014-02-24 mvc Multi-View Clustering
2014-02-24 pcrcoal A package implementing the coalescent approach to PCR simulation developed by Weiss and von Haeseler (NAR, 1997)
2014-02-24 RegClust Cluster analysis via regression coefficients
2014-02-24 RYoudaoTranslate R package provide functions to translate English words into Chinese
2014-02-24 spikeSlabGAM Bayesian variable selection and model choice for generalized additive mixed models
2014-02-24 StableEstim Estimate the 4 parameters of stable law using different methods
2014-02-24 tabplot Tableplot, a visualization of large datasets
2014-02-24 tsfa Time Series Factor Analysis
2014-02-24 x12 x12 - wrapper function and structure for batch processing
2014-02-24 x12GUI X12 - Graphical User Interface
2014-02-23 eeptools Convenience functions for education data
2014-02-23 EMMIXcontrasts Contrasts in mixed effects for EMMIX model with random effects
2014-02-23 energy E-statistics (energy statistics)
2014-02-23 growcurves Bayesian semi and nonparametric growth curve models that additionally include multiple membership random effects
2014-02-23 parma Portfolio Allocation and Risk Management Applications
2014-02-23 psData A package to download regularly maintained political science data sets and make commonly used, but infrequently updated variables based on this data
2014-02-23 R2SWF Convert R Graphics to Flash Animations
2014-02-23 sysfonts Loading system fonts into R
2014-02-22 baseline Baseline Correction of Spectra
2014-02-22 blender Analyze biotic homogenization of landscapes
2014-02-22 bursts Markov model for bursty behavior in streams
2014-02-22 cairoDevice Cairo-based cross-platform antialiased graphics device driver
2014-02-22 DSL Distributed Storage and List
2014-02-22 equate Observed-Score Linking and Equating
2014-02-22 hcci Interval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap)
2014-02-22 hive Hadoop InteractiVE
2014-02-22 lavaan.survey Complex survey Structural Equation Modeling (SEM)
2014-02-22 plumbr Mutable and dynamic data models
2014-02-22 Rgnuplot R interface for gnuplot
2014-02-22 testthat Testthat code. Tools to make testing fun :)
2014-02-21 arf3DS4 Activated Region Fitting, fMRI data analysis (3D)
2014-02-21 bcool Bringing to light significant Columns correlated with Organism Labels
2014-02-21 clere CLERE methodology for simultaneous variables clustering and regression
2014-02-21 dynlm Dynamic Linear Regression
2014-02-21 eulerian eulerian: A package to find eulerian paths from graphs
2014-02-21 gamlss.spatial Package to fit spatial data in gamlss
2014-02-21 glogis Fitting and Testing Generalized Logistic Distributions
2014-02-21 HPOSim Analysis semantic similarity between HPO terms and HPO-based phenotypic similarity between genes and between diseases
2014-02-21 longCatEDA Package for Plotting Categorical Longitudinal and Time-Series Data
2014-02-21 lpmodeler Modeler for linear programs (LP) and mixed integer linear programs (MILP)
2014-02-21 ncdf4.helpers Helper functions for use with the ncdf4 package
2014-02-21 RDieHarder R interface to the dieharder RNG test suite
2014-02-21 Rmosek The R-to-MOSEK Optimization Interface
2014-02-21 rsnps Get SNP (Single-Nucleotide Polymorphism) data on the web
2014-02-21 selectr Translate CSS Selectors to XPath Expressions
2014-02-21 SPAr Perform rare variants association analysis based on summation of partition approaches
2014-02-21 treebase An R package for discovery, access and manipulation of online phylogenies
2014-02-21 TTAinterfaceTrendAnalysis Temporal Trend Analysis Graphical Interface
2014-02-21 zendeskR Zendesk API Wrapper
2014-02-20 ARTP Gene and Pathway p-values computed using the Adaptive Rank Truncated Product
2014-02-20 denstrip Density strips and other methods for compactly illustrating distributions
2014-02-20 DiagTest3Grp Diagnostic test summary measures for three ordinal groups
2014-02-20 diffusionMap Diffusion map
2014-02-20 diveMove Dive analysis and calibration
2014-02-20 diversitree diversitree: comparative phylogenetic analyses of diversification
2014-02-20 fftwtools Wrapper for fftw3: includes 1-D, univariate and multivariate, and 2-D transform
2014-02-20 highriskzone Determining and evaluating high-risk zones
2014-02-20 lm.br Linear Model with Breakpoint
2014-02-20 lorec LOw Rand and sparsE Covariance matrix estimation
2014-02-20 mixreg Functions to fit mixtures of regressions
2014-02-20 OLScurve OLS growth curve trajectories
2014-02-20 restorepoint Debugging with restore points
2014-02-20 RFreak R/FrEAK interface
2014-02-19 gld Estimation and use of the generalised (Tukey) lambda distribution
2014-02-19 mGSZ Gene set analysis based on GSZ-scoring function and asymptotic p-value
2014-02-19 ParetoPosStable Computing, fitting and validating the Pareto Positive Stable distribution
2014-02-18 forams Foraminifera and Community Ecology Analyses
2014-02-18 gdistance distances and routes on geographical grids
2014-02-18 metrumrg Pharmacometric tools for data preparation, modeling, simulation, and reporting
2014-02-18 pbdDEMO Programming with Big Data – Demonstrations of pbd Packages
2014-02-18 rbison R interface to the USGS BISON API
2014-02-18 rfisheries R interface for fisheries data
2014-02-18 SimSeq Nonparametric Simulation of RNA-Seq Data
2014-02-18 SKAT SNP-set (Sequence) Kernel Association Test
2014-02-17 bshazard Nonparametric Smoothing of the Hazard Function
2014-02-17 CVD Color Vision Deficiencies
2014-02-17 edeR Email Data Extraction Using R
2014-02-17 eha Event History Analysis
2014-02-17 grppenalty Concave 1-norm and 2-norm group penalty in linear and logistic regression
2014-02-17 mutoss Unified multiple testing procedures
2014-02-17 praktikum Kvantitatiivsete meetodite praktikumi asjad / Functions used in the course "Quantitative methods in behavioural sciences" (SHPH.00.004), University of Tartu
2014-02-17 RcmdrPlugin.pointG Graphical POINT of view for questionnaire data Rcmdr Plug-In
2014-02-17 SoftClustering Soft Clustering Algorithms
2014-02-17 turner Turn vectors and lists of vectors into indexed structures
2014-02-17 YPmodel The Short-term and Long-term Hazard Ratio Model for Survival Data
2014-02-16 DTComPair Comparison of Binary Diagnostic Tests in a Paired Study Design
2014-02-16 sdtoolkit Scenario Discovery Tools to Support Robust Decision Making
2014-02-15 BMhyd PCM for Hybridization
2014-02-15 CRAC Cosmology R Analysis Code
2014-02-15 mistral Methods in Structural Reliability
2014-02-15 rSFA Slow Feature Analysis in R
2014-02-14 CCMnet Simulate Congruence Class Model for Networks
2014-02-14 prospectr Miscellaneous functions for processing and sample selection of vis-NIR diffuse reflectance data
2014-02-14 rtiff A tiff reader for R
2014-02-14 surface Fitting Hansen Models to Investigate Convergent Evolution
2014-02-13 KATforDCEMRI Kinetic analysis and visualization of DCE-MRI data
2014-02-13 pdc Permutation Distribution Clustering
2014-02-13 rsae Robust Small Area Estimation
2014-02-13 wrspathrow Functions for working with Worldwide Reference System (WRS)
2014-02-12 AlgDesign Algorithmic Experimental Design
2014-02-12 bio.infer Predict environmental conditions from biological observations
2014-02-12 CHNOSZ Chemical Thermodynamics and Activity Diagrams
2014-02-12 ecosim Toolbox for Aquatic Ecosystem Modeling
2014-02-12 expm Matrix exponential
2014-02-12 fitdistrplus Help to fit of a parametric distribution to non-censored or censored data
2014-02-12 MarkowitzR Statistical significance of the Markowitz portfolio
2014-02-12 MatrixModels Modelling with Sparse And Dense Matrices
2014-02-12 mcr Method Comparison Regression
2014-02-12 MLCM Maximum Likelihood Conjoint Measurement
2014-02-12 packdep Mapping dependencies among R packages
2014-02-12 QCGWAS Quality Control of Genome Wide Association Study results
2014-02-12 RInside C++ classes to embed R in C++ applications
2014-02-12 SAM Sparse Additive Modelling
2014-02-12 vecsets like base::sets tools but keeps duplicate elements
2014-02-12 wrspathrowData Data used by the wrspathrow package
2014-02-11 bfa Bayesian Factor Analysis
2014-02-11 chromoR Analysis of chromosomal interactions data (correction, segmentation and comparison)
2014-02-11 chron Chronological objects which can handle dates and times
2014-02-11 dlmodeler Generalized Dynamic Linear Modeler
2014-02-11 DoseFinding Planning and Analyzing Dose Finding experiments
2014-02-11 filehash Simple key-value database
2014-02-11 frair Functional response analysis in R
2014-02-11 gamboostMSM Estimating multistate models using gamboost()
2014-02-11 HMMCont Hidden Markov Model for Continuous Observations Processes
2014-02-11 IgorR Read binary files saved by Igor Pro (including Neuromatic data)
2014-02-11 kknn Weighted k-Nearest Neighbors
2014-02-11 phenex Auxiliary functions for phenological data analysis
2014-02-11 scatterplot3d 3D Scatter Plot
2014-02-11 schwartz97 A package on the Schwartz two-factor commodity model
2014-02-10 bayesTFR Bayesian Fertility Projection
2014-02-10 bmrm Bundle Methods for Regularized Risk Minimization Package
2014-02-10 FKF Fast Kalman Filter
2014-02-10 localgauss Estimating local Gaussian parameters
2014-02-10 npst Generalization of Hewitt's Seasonality Test
2014-02-10 PCAmixdata Multivariate analysis for a mixture of quantitative and qualitative data
2014-02-10 rtop Interpolation of data with variable spatial support
2014-02-10 statnet Software tools for the Statistical Analysis of Network Data
2014-02-10 tfplot Time Frame User Utilities
2014-02-09 lambda.tools Tools for modeling data with functional programming
2014-02-09 phom Persistent Homology in R
2014-02-09 soc.ca Specific correspondence analysis for the social sciences
2014-02-09 XNomial Exact Goodness-Of-Fit Test For Multinomial Data With Fixed Probabilities
2014-02-08 FAiR Factor Analysis in R
2014-02-08 phyreg Implements the Phylogenetic Regression of Grafen (1989)
2014-02-08 tmle.npvi Targeted Minimum Loss Estimation (TMLE) of a NP variable importance of a continuous exposure
2014-02-07 cpca Methods to perform Common Principal Component Analysis (CPCA)
2014-02-07 gpr A Minimalistic package to apply Gaussian Process in R
2014-02-07 maxstat Maximally Selected Rank Statistics
2014-02-07 networkDynamicData dynamic network datasets
2014-02-07 rangeMapper A platform for the study of macroecology of life history traits
2014-02-07 RcmdrPlugin.EACSPIR Plugin de R-Commander para el manual EACSPIR
2014-02-07 Ruchardet R package to detect character encoding
2014-02-07 SYNCSA SYNCSA - Analysis of functional and phylogenetic patterns in metacommunities
2014-02-06 dawai Discriminant analysis with additional information
2014-02-06 easynls Easy nonlinear model
2014-02-06 logcondiscr Estimate a Log-Concave Probability Mass function from Discrete i.i.d. Observations
2014-02-06 ltsk local time space kriging
2014-02-06 multiplex Analysis of Multiple Social Networks with Algebra
2014-02-06 smoothtail Smooth Estimation of GPD Shape Parameter
2014-02-06 unbalanced The package implements different data-driven method for unbalanced datasets
2014-02-06 VecStatGraphs2D Vector analysis using graphical and analytical methods in 2D
2014-02-05 eRm Extended Rasch Modeling
2014-02-05 paf Attributable Fraction Function for Censored Survival Data
2014-02-05 rpart.plot Plot rpart models. An enhanced version of plot.rpart
2014-02-05 Rssa A collection of methods for singular spectrum analysis
2014-02-05 StrainRanking Ranking of pathogen strains
2014-02-04 DEoptimR Differential Evolution Optimization in pure R
2014-02-04 depmixS4 Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
2014-02-04 hydroGOF Goodness-of-fit functions for comparison of simulated and observed hydrological time series
2014-02-04 igraphdata A collection of network data sets for the igraph package
2014-02-04 iScreen image-based High-Throughput RNAi Screening Analysis Tool
2014-02-04 minqa Derivative-free optimization algorithms by quadratic approximation
2014-02-04 plotmo Plot a model's response while varying the values of the predictors
2014-02-04 spc Statistical Process Control – Collection of Some Useful Functions
2014-02-03 frbs Fuzzy Rule-based Systems for Classification and Regression Tasks
2014-02-03 MAd Meta-Analysis with Mean Differences
2014-02-03 MetABEL Meta-analysis of genome-wide SNP association results
2014-02-03 PIGShift Polygenic Inverse Gamma rate Shifts
2014-02-03 pmclust Parallel Model-Based Clustering
2014-02-03 sampSurf Sampling Surface Simulation for Areal Sampling Methods
2014-02-02 optimsimplex R port of the Scilab optimsimplex module
2014-02-02 phangorn Phylogenetic analysis in R
2014-02-01 SCBmeanfd Simultaneous Confidence Bands for the Mean of Functional Data
2014-02-01 vbdm Variational Bayes Discrete Mixture Model
2014-01-31 bqtl Bayesian QTL mapping toolkit
2014-01-31 distrom Distributed Multinomial Regression
2014-01-31 EMD Empirical Mode Decomposition and Hilbert Spectral Analysis
2014-01-31 fdaMixed Functional data analysis in a mixed model framework
2014-01-31 gdalUtils Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
2014-01-31 HLMdiag Diagnostic tools for hierarchical (multilevel) linear models
2014-01-31 jackstraw Non-parametric Jackstraw for Principal Component Analysis
2014-01-31 loe Local Ordinal Embedding
2014-01-31 lsr Companion package to "Learning Statistics with R"
2014-01-31 naturalsort Natural Ordering
2014-01-31 ndtv Network Dynamic Temporal Visualizations
2014-01-31 Pomic Pomic
2014-01-31 rgam Robust Generalized Additive Model
2014-01-31 SBSA Simplified Bayesian Sensitivity Analysis
2014-01-31 simplexreg Regression Analysis of Proportional Data Using Simplex Distribution
2014-01-31 textir Inverse Regression for Text Analysis
2014-01-30 mmeta Multivariate Meta-Analysis
2014-01-30 nonlinearTseries R package for nonlinear time series analysis
2014-01-30 pSI Specificity Index Statistic
2014-01-30 VariABEL Testing of genotypic variance heterogeneity to detect potentially interacting SNP
2014-01-29 ENA Ensemble Network Aggregation
2014-01-29 fdasrvf Elastic Functional Data Analysis
2014-01-29 lazyData A LazyData Facility
2014-01-29 PCIT PCIT algorithm - Partial Correlation Coefficient with Information Theory
2014-01-29 permute Functions for generating restricted permutations of data
2014-01-29 VoxR Metrics extraction of trees from T-LiDAR data
2014-01-28 AER Applied Econometrics with R
2014-01-28 BayesMed Default Bayesian hypothesis tests for correlation, partial correlation, and mediation
2014-01-28 BB Solving and Optimizing Large-Scale Nonlinear Systems
2014-01-28 cacIRT Classification accuracy and consistency under Item Response Theory
2014-01-28 CVcalibration Estimation of the Calibration Equation with Error-in Observations
2014-01-28 earth Multivariate Adaptive Regression Spline Models
2014-01-28 in2extRemes Into the extRemes Package
2014-01-28 RapidPolygonLookup Polygon lookup using kd trees
2014-01-28 Rramas Matrix population models
2014-01-28 SGP An R Package for the Calculation and Visualization of Student Growth Percentiles & Percentile Growth Trajectories
2014-01-28 TAQMNGR Manage tick-by-tick transaction data
2014-01-27 drgee Doubly Robust Generalized Estimating Equations
2014-01-27 dualScale Dual Scaling Analysis of Multiple Choice Data
2014-01-27 ebal Entropy reweighting to create balanced samples
2014-01-27 MergeGUI A GUI for Merging Datasets in R
2014-01-27 Synth Synthetic Control Group Method for Comparative Case Studies
2014-01-26 cclust Convex Clustering Methods and Clustering Indexes
2014-01-26 oro.dicom Rigorous - DICOM Input / Output
2014-01-26 RcppClassic Deprecated 'classic' Rcpp API
2014-01-26 RcppZiggurat Rcpp integration of different Ziggurat Normal RNG implementations
2014-01-26 RISmed Download content from NCBI databases
2014-01-26 sqliter Connection wrapper to SQLite databases
2014-01-25 futile.logger A logging library for R
2014-01-25 gnmf Generalized Non-negative Matrix Factorization Based on Renyi Divergence
2014-01-25 irlba Fast partial SVD by implicitly-restarted Lanczos bidiagonalization
2014-01-25 PEMM A Penalized EM algorithm incorporating missing-data mechanism
2014-01-25 rbounds Perform Rosenbaum bounds sensitivity tests for matched and unmatched data
2014-01-25 RWiener Wiener process distribution functions
2014-01-25 TIMP a problem solving environment for fitting separable nonlinear models in physics and chemistry applications
2014-01-24 DPw Semiparametric Bayesian procedure for selecting a subset containing the weakest species with an acceptably high probability
2014-01-24 gconcord Concord method for Graphical Model Selection
2014-01-24 lmeNB Fit negative binomial mixed-effect regression model
2014-01-24 lmeNBBayes Sample from the posterior of the negative binomial mixed-effect regression model. The random effect is modeled with DP mixture of beta distributions
2014-01-24 LSC Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data
2014-01-24 vegdata Functions to access vegetation databases (Turboveg) and prepare vegetation data especially its taxonomy for analysis
2014-01-23 choplump Choplump tests
2014-01-23 correlate Multivariate Data Generation by Permutation
2014-01-23 cSFM Covariate-adjusted Skewed Functional Model (cSFM)
2014-01-23 gitter an R package for quantification of pinned microbial culture
2014-01-23 hydroTSM Time series management, analysis and interpolation for hydrological modelling
2014-01-23 interval Weighted Logrank Tests and NPMLE for interval censored data
2014-01-23 irtoys Simple interface to the estimation and plotting of IRT models
2014-01-23 jpeg Read and write JPEG images
2014-01-23 lambda.r Modeling Data with Functional Programming
2014-01-23 lmtest Testing Linear Regression Models
2014-01-23 msos Datasets and Functions used in Multivariate Statistics: Old School by John Marden
2014-01-23 pedantics Functions to facilitate power and sensitivity analyses for genetic studies of natural populations
2014-01-23 saws Small-Sample Adjustments for Wald tests Using Sandwich Estimators
2014-01-23 sigclust Statistical Significance of Clustering
2014-01-23 vcf2geno Efficiently Read Variant Call Format (VCF) into R
2014-01-22 acs Download, manipulate, and present data from the US Census American Community Survey
2014-01-22 BayesSingleSub Computation of Bayes factors for interrupted time-series designs
2014-01-22 c060 Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
2014-01-22 Gammareg classic gamma regression: joint modeling of mean and shape parameters
2014-01-22 psyphy Functions for analyzing psychophysical data in R
2014-01-22 RAMpath Structural Equation Modeling using the reticular action model (RAM) Notation
2014-01-22 rateratio.test Exact rate ratio test
2014-01-22 rkt Mann-Kendall test, Seasonal and Regional Kendall Tests
2014-01-22 survival Survival Analysis
2014-01-22 tergm Fit, Simulate and Diagnose Models for Network Evolution based on Exponential-Family Random Graph Models
2014-01-21 AID An R Package to Estimate Box-Cox Power Transformation Parameter
2014-01-21 gvlma Global Validation of Linear Models Assumptions
2014-01-21 MissMech Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random
2014-01-21 truncnorm Truncated normal distribution
2014-01-21 useful A collection of handy, useful functions
2014-01-20 AOfamilies Aranda-Ordaz (AO) transformation families
2014-01-20 Disake Discrete associated kernel estimators
2014-01-20 flexsurv Flexible parametric survival models
2014-01-20 HUM compute HUM value and visualize ROC curves
2014-01-20 mistat Data sets, functions and examples from the book:"Modern Industrial Statistics" by Kenett, Zacks and Amberti
2014-01-20 MLDS Maximum Likelihood Difference Scaling
2014-01-20 SGPdata Exemplar data sets for SGP analyses
2014-01-19 blockmatrix blockmatrix: Tools to solve algebraic systems with partitioned matrices
2014-01-19 cda Coupled dipole approximation of light scattering by clusters of nanoparticles
2014-01-19 IBHM Approximation using the IBHM method
2014-01-19 ldbounds Lan-DeMets Method for Group Sequential Boundaries
2014-01-19 mfx Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
2014-01-19 RHRV Heart rate variability analysis of ECG data
2014-01-19 RTextTools Automatic Text Classification via Supervised Learning
2014-01-19 simexaft simexaft
2014-01-19 WeightedCluster Clustering of Weighted Data
2014-01-18 gamlss.mx A GAMLSS add on package for fitting mixture distributions
2014-01-18 gamlss.tr Generating and fitting truncated (gamlss.family) distributions
2014-01-18 HBSTM Hierarchical Bayesian Space-Time models for Gaussian space-time data
2014-01-18 NanoStringNorm Normalize NanoString miRNA and mRNA data
2014-01-18 Sequential Exact Sequential Analysis for Poisson Data
2014-01-17 additivityTests Additivity tests in the two way ANOVA with single sub-class numbers
2014-01-17 arulesSequences Mining frequent sequences
2014-01-17 breakpoint An R Package for Multiple Break-Point Detection via the Cross-Entropy Method
2014-01-17 dosresmeta Performing multivariate dose-response meta-analysis
2014-01-17 epinet A collection of epidemic/network-related tools
2014-01-17 eventInterval Sequential event interval analysis
2014-01-17 games Statistical Estimation of Game-Theoretic Models
2014-01-17 odfWeave Sweave processing of Open Document Format (ODF) files
2014-01-17 rbhl R interface to the Biodiversity Heritage Library
2014-01-17 SCORER2 SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences
2014-01-17 wpp2008 World Population Prospects 2008
2014-01-16 bdynsys Bayesian Dynamical System Model
2014-01-16 blockcluster Co-Clustering package for binary, contingency, continuous and categorical data-sets
2014-01-16 desirability Desirabiliy Function Optimization and Ranking
2014-01-16 dfexplore Explore data.frames by plotting NA and classes of each variable
2014-01-16 fastHICA Hierarchical Independent Component Analysis: a multi-scale sparse non-orthogonal data-driven basis
2014-01-16 mapproj Map Projections
2014-01-16 multinbmod Regression analysis of overdispersed correlated count data
2014-01-16 quadrupen Sparsity by Worst-Case Quadratic Penalties
2014-01-16 sm Smoothing methods for nonparametric regression and density estimation
2014-01-16 utility Construct, Evaluate and Plot Value and Utility Functions
2014-01-16 YourCast Forecasting age-sex-country-cause mortality rates
2014-01-15 cba Clustering for Business Analytics
2014-01-15 clustsig Significant Cluster Analysis
2014-01-15 fishmove Prediction of Fish Movement Parameters
2014-01-15 Funclustering A package for functional data clustering
2014-01-15 GWsignif Genome-wide significance for whole genome sequencing studies
2014-01-15 hwriterPlus hwriterPlus: Extending the hwriter Package
2014-01-15 lmomRFA Regional frequency analysis using L-moments
2014-01-15 loa loa: various plots, options and add-ins for use with lattice
2014-01-15 mph Multiscale persistent homology
2014-01-15 OPDOE OPtimal Design Of Experiments
2014-01-15 proxy Distance and Similarity Measures
2014-01-15 RAtmosphere Standard Atmospheric profiles
2014-01-15 reglogit Simulation-based Regularized Logistic Regression
2014-01-15 TH.data TH's Data Archive
2014-01-14 AcceptanceSampling Creation and evaluation of Acceptance Sampling Plans
2014-01-14 ICEinfer Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples
2014-01-14 iDynoR R Analysis package for iDynoMiCS Simulation Results
2014-01-14 linkim Linkage information based genotype imputation method
2014-01-14 oz Plot the Australian coastline and states
2014-01-14 rEMM Extensible Markov Model (EMM) for Data Stream Clustering in R
2014-01-14 RockFab Rock fabric and strain analysis tools
2014-01-14 RXshrink Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression
2014-01-14 sna Tools for Social Network Analysis
2014-01-14 soiltexture Functions for soil texture plot, classification and transformation
2014-01-14 TraMineR Trajectory miner: a toolbox for exploring and rendering sequence data
2014-01-13 ccda Combined Cluster and Discriminant Analysis
2014-01-13 ecolMod "A practical guide to ecological modelling - using R as a simulation platform"
2014-01-13 FME A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability, Monte Carlo Analysis
2014-01-13 geophys Geophysics, Continuum Mechanics, Mogi Model
2014-01-13 LIM Linear Inverse Model examples and solution methods
2014-01-13 MF Mitigated Fraction
2014-01-13 NetIndices Estimating network indices, including trophic structure of foodwebs in R
2014-01-13 pkgutils pkgutils – Utilities for creating R packages
2014-01-13 SCMA Single-Case Meta-Analysis
2014-01-13 TimeMachine Time Machine
2014-01-12 pcIRT IRT models for polytomous and continuous item responses
2014-01-11 DSBayes Bayesian subgroup analysis in clinical trials
2014-01-11 gamlss.cens Fitting an interval response variable using gamlss.family distributions
2014-01-11 gamlss.data GAMLSS Data
2014-01-11 gamlss.demo Demos for GAMLSS
2014-01-11 kst Knowledge Space Theory
2014-01-11 tempdisagg Methods for Temporal Disaggregation and Interpolation of TimeSeries
2014-01-10 citbcmst CIT Breast Cancer Molecular SubTypes Prediction
2014-01-10 citccmst CIT Colon Cancer Molecular SubTypes Prediction
2014-01-10 CpGassoc Association between Methylation and a phenotype of interest
2014-01-10 DiceKriging Kriging methods for computer experiments
2014-01-10 genalg R Based Genetic Algorithm
2014-01-10 GroupSeq A GUI-based program to compute probabilities regarding group sequential designs
2014-01-10 jointPm Risk estimation using the joint probability method
2014-01-10 networkTomography Tools for network tomography
2014-01-10 phylosim R package for simulating biological sequence evolution
2014-01-10 plRasch Log Linear by Linear Association models and Rasch family models by pseudolikelihood estimation
2014-01-10 poLCA Polytomous variable Latent Class Analysis
2014-01-10 vectoptim Vectorized optimization methods
2014-01-09 cwm Cluster Weighted Models by EM algorithm
2014-01-09 dagR R functions for directed acyclic graphs
2014-01-09 gpmap Analysing and plotting genotype-phenotype maps
2014-01-09 IsingSampler Sampling methods and distribution functions for the Ising model
2014-01-09 mhsmm Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences
2014-01-08 CADFtest This package performs the CADF unit root test proposed in Hansen (1995)
2014-01-08 diagram Functions for visualising simple graphs (networks), plotting flow diagrams
2014-01-08 glpkAPI R Interface to C API of GLPK
2014-01-08 GRaF Species distribution modelling using latent Gaussian random fields
2014-01-08 MultiPhen MultiPhen, a package for the genetic association testing of multiple phenotypes
2014-01-08 numbers Number-theoretic Functions
2014-01-08 PGM2 Recursive method for construction of nested resolvable designs and uniform designs associated
2014-01-08 repfdr Replicability Analysis for Multiple Studies of High Dimension
2014-01-08 rootSolve Nonlinear root finding, equilibrium and steady-state analysis of ordinary differential equations
2014-01-08 shape Functions for plotting graphical shapes, colors
2014-01-08 WhatIf WhatIf: Software for Evaluating Counterfactuals
2014-01-07 AdMit Adaptive Mixture of Student-t distributions
2014-01-07 bayesGARCH Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
2014-01-07 marelac Tools for Aquatic Sciences
2014-01-07 multic Quantitative linkage analysis tools using the variance components approach
2014-01-07 PEIP Functions for Aster Book on Inverse Theory
2014-01-07 plot3D Plotting multi-dimensional data
2014-01-07 rapportools Miscellaneous (stats) helper functions with sane defaults for reporting
2014-01-07 rfishbase R Interface to FishBASE
2014-01-07 rriskDistributions Fitting distributions to given data or known quantiles
2014-01-07 RVowpalWabbit R interface to the Vowpal Wabbit
2014-01-07 shuffle The shuffle estimator for explainable variance
2014-01-07 smatr (Standardised) Major Axis Estimation and Testing Routines
2014-01-07 streamR Access to Twitter Streaming API via R
2014-01-06 FLLat Fused Lasso Latent Feature Model
2014-01-06 gte Generalized Turnbull's estimator
2014-01-06 oem Orthogonalizing Expectation maximization
2014-01-06 RFOC Graphics for Spherical Distributions and Earthquake Focal Mechanisms
2014-01-06 robcor Robust Correlations
2014-01-06 Rquake Seismic Hypocenter Determination
2014-01-06 RSurvey Analysis of Spatially Distributed Data
2014-01-06 RTOMO Visualization for seismic tomography
2014-01-06 sfa Stochastic Frontier Analysis
2014-01-06 survSNP Power and Sample Size Calculations for SNP Association Studies with Censored Time to Event Outcomes
2014-01-06 TeachNet Fits neural networks to learn about back propagation
2014-01-05 GEOmap Topographic and Geologic Mapping
2014-01-05 glmmGS Gauss-Seidel Generalized Linear Mixed Model solver
2014-01-05 RClimMAWGEN RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather GENeretor): a package to generate time series of climate indices from RMAWGEN generations
2014-01-05 R.methodsS3 Utility function for defining S3 methods
2014-01-05 RSEIS Seismic Time Series Analysis Tools
2014-01-04 DESnowball Bagging with Distance-based Regression for Differential Gene Expression Analyses
2014-01-04 RPMG Graphical User Interface (GUI) for interactive R analysis sessions
2014-01-04 SharpeR Statistical significance of Sharpe ratio
2014-01-04 SWATmodel A multi-OS implementation of the TAMU SWAT model
2014-01-03 AdaptiveSparsity Adaptive Sparsity Models
2014-01-03 compHclust Complementary Hierarchical Clustering
2014-01-03 cosmosR cosmosR
2014-01-03 datalist An R package to convert data sets for import into JAGS, WinBUGS and OpenBUGS and to generate data.frames for predicting the effects of particular variables
2014-01-03 fractal Fractal Time Series Modeling and Analysis
2014-01-03 FuzzyNumbers Tools to deal with fuzzy numbers
2014-01-03 geozoo Zoo of Geometric Objects
2014-01-03 glmnetcr Fit a penalized constrained continuation ratio model for predicting an ordinal response
2014-01-03 glmpathcr Fit a penalized continuation ratio model for predicting an ordinal response
2014-01-03 qiimer Work with QIIME Output Files in R
2014-01-03 qrfactor Simultaneous simulation of Q and R mode factor analyses with Spatial data
2014-01-02 BayesComm Bayesian community ecology analysis
2014-01-02 binom Binomial Confidence Intervals For Several Parameterizations
2014-01-02 BioGeoBEARS BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts
2014-01-02 FAMT Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data
2014-01-02 glmmBUGS Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS
2014-01-02 gnm Generalized Nonlinear Models
2014-01-02 icapca Mixed ICA/PCA
2014-01-02 PBImisc A set of datasets used in my classes or in the book ,,Modele liniowe i mieszane w R, wraz z przykladami w analizie danych”
2014-01-02 PedCNV An implementation for association analysis with CNV data
2014-01-02 postCP A package to estimate posterior probabilities and perform model selection in change-point models using constrained HMM
2014-01-02 RCA Relational Class Analysis
2014-01-02 robustgam Robust Estimation for Generalized Additive Models
2014-01-02 VIMGUI Visualization and Imputation of Missing Values
2014-01-02 xts eXtensible Time Series
2014-01-01 mmm an R package for analyzing multivariate longitudinal data with multivariate marginal models
2014-01-01 PLRModels Statistical inference in partial linear regression models
2014-01-01 showtext Enable (any) R Graphics Device to Show Text Using System Fonts
2013-12-31 biplotbootGUI Bootstrap on Classical Biplots
2013-12-31 DCGL Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
2013-12-31 fitDRC Fitting Density Ratio Classes
2013-12-31 lubridate Make dealing with dates a little easier
2013-12-31 missForest Nonparametric Missing Value Imputation using Random Forest
2013-12-31 mmm2 Multivariate marginal models with shared regression parameters
2013-12-31 texmex Statistical modelling of extreme values
2013-12-31 TiddlyWikiR Create dynamic reports using a TiddlyWiki template
2013-12-30 dcemriS4 A Package for Medical Image Analysis (S4 implementation)
2013-12-30 dtt Discrete Trigonometric Transforms
2013-12-30 financial Solving financial problems in R
2013-12-30 mblm Median-Based Linear Models
2013-12-30 moonsun Basic astronomical calculations with R
2013-12-30 PIGE Self contained gene set analysis for gene- and pathway-environment interaction analysis
2013-12-30 sapa Spectral Analysis for Physical Applications
2013-12-30 sdprisk Measures of Risk for the Compound Poisson Risk Process with Diffusion
2013-12-30 seawaveQ U.S. Geological Survey seawaveQ model
2013-12-30 stab data analysis of drug stability for shelf life estimation
2013-12-30 wmtsa Wavelet Methods for Time Series Analysis
2013-12-29 BiasedUrn Biased Urn model distributions
2013-12-29 spate Spatio-temporal modeling of large data using a spectral SPDE approach
2013-12-28 acm4r Align-and-Count Method comparisons of RFLP data
2013-12-28 mhurdle Multiple hurdle Tobit models
2013-12-28 MortalitySmooth Smoothing and forecasting Poisson counts with P-splines
2013-12-28 pglm panel generalized linear model
2013-12-28 plm Linear Models for Panel Data
2013-12-28 prevR Estimating regional trends of a prevalence from a DHS
2013-12-28 rgabriel Gabriel Multiple Comparison Test and Plot the Confidence Interval on Barplot
2013-12-27 clustrd Methods for joint dimension reduction and clustering
2013-12-27 extfunnel Additional Funnel Plot Augmentations
2013-12-27 fptdApprox Approximation of first-passage-time densities for diffusion processes
2013-12-27 GenABEL genome-wide SNP association analysis
2013-12-27 GenABEL.data Package contains data which is used by GenABEL example and test functions
2013-12-27 mlogit multinomial logit model
2013-12-27 oro.nifti Rigorous - NIfTI+ANALYZE+AFNI Input / Output
2013-12-27 ROC632 Construction of diagnostic or prognostic scoring system and internal validation of its discriminative capacities based on ROC curve and 0.633+ boostrap resampling
2013-12-27 saves Fast load variables
2013-12-27 SIN A SINful Approach to Selection of Gaussian Graphical Markov Models
2013-12-27 spider Species Identity and Evolution in R
2013-12-27 truncreg Truncated Gaussian Regression Models
2013-12-26 cpk Clinical Pharmacokinetics
2013-12-26 mycobacrvR Integrative immunoinformatics for Mycobacterial diseases in R platform
2013-12-25 kmc Kaplan - Meier estimator with constraints for right censored data – a recursive computational algorithm
2013-12-24 evt0 Mean of order p, peaks over random threshold Hill and high quantile estimates
2013-12-24 RcmdrPlugin.sos Efficiently search the R help pages
2013-12-24 rJava Low-level R to Java interface
2013-12-24 safeBinaryRegression Safe Binary Regression
2013-12-24 TSTutorial Fitting and Predict Time Series Interactive Laboratory
2013-12-23 audio Audio Interface for R
2013-12-23 genoPlotR Plot publication-grade gene and genome maps
2013-12-23 MigClim Implementing dispersal into species distribution models
2013-12-23 pcaL1 Three L1-Norm PCA Methods
2013-12-23 SHIP SHrinkage covariance Incorporating Prior knowledge
2013-12-23 waveslim Basic wavelet routines for one-, two- and three-dimensional signal processing
2013-12-22 SamplerCompare A framework for comparing the performance of MCMC samplers
2013-12-21 JGR JGR - Java GUI for R
2013-12-21 pa Performance Attribution for Equity Portfolios
2013-12-21 pcaPA Parallel Analysis for ordinal and numeric data using polychoric and Pearson correlations with S3 classes
2013-12-21 pmcgd pmcgd
2013-12-21 RSofia Port of sofia-ml (http://code.google.com/p/sofia-ml/) to R
2013-12-21 SemiCompRisks Parametric and semi-parametric analyses of semi-competing risks data
2013-12-21 shapes Statistical shape analysis
2013-12-21 XiMpLe A simple XML tree parser and generator
2013-12-20 AdequacyModel Adequacy of probabilistic models and generation of pseudo-random numbers
2013-12-20 cit Causal Inference Test
2013-12-20 ipred Improved Predictors
2013-12-20 LINselect Selection of linear estimators
2013-12-20 LPS Linear Predictor Score, for binary inference from multiple continuous variables
2013-12-20 ltm Latent Trait Models under IRT
2013-12-20 polytomous Polytomous logistic regression for fixed and mixed effects
2013-12-20 profileR Profile Analysis of Multivariate Data in R
2013-12-20 PST Probabilistic Suffix Trees and Variable Length Markov Chains
2013-12-20 ROCt Time-dependent ROC curve estimation and adaptation to the relative survival context
2013-12-19 AssotesteR Statistical Tests for Genetic Association Studies
2013-12-19 BBRecapture Bayesian Behavioural Capture-Recapture Models
2013-12-19 colortools Tools for colors in a Hue-Saturation-Value (HSV) color model
2013-12-19 minPtest Gene region-level testing procedure for SNP data, using the min P test resampling approach
2013-12-19 robustloggamma Robust estimation of the generalized log gamma model
2013-12-19 tikzDevice R Graphics Output in LaTeX Format
2013-12-19 TilePlot Characterization of functional genes in complex microbial communities using tiling DNA microarrays
2013-12-18 bvls The Stark-Parker algorithm for bounded-variable least squares
2013-12-18 cardidates Identification of Cardinal Dates in Ecological Time Series
2013-12-18 cellVolumeDist Functions to fit cell volume distributions and thereby estimate cell growth rates and division times
2013-12-18 CRTSize Sample Size Estimation Functions for Cluster Randomized Trials
2013-12-18 FindMinIC Find Models with Minimum IC
2013-12-18 HWEBayes Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing
2013-12-18 maxlike Model species distributions by estimating the probability of occurrence using presence-only data
2013-12-18 mvna Nelson-Aalen estimator of the cumulative hazard in multistate models
2013-12-18 PropClust Propensity Clustering and Decomposition
2013-12-18 RAppArmor Interfaces to Linux and AppArmor security methods
2013-12-18 RcmdrPlugin.lfstat Rcmdr Plug-In for low flow analysis
2013-12-18 scalreg Scaled sparse linear regression
2013-12-18 snowfall Easier cluster computing (based on snow)
2013-12-18 VHDClassification Discrimination/Classification in very high dimension with linear and quadratic rules
2013-12-18 wavelets A package of functions for computing wavelet filters, wavelet transforms and multiresolution analyses
2013-12-18 ycinterextra Yield curve or zero-coupon prices interpolation and extrapolation
2013-12-17 Demerelate Functions to calculate relatedness on diploid genetic data
2013-12-17 fastcluster Fast hierarchical clustering routines for R and Python
2013-12-17 fBonds Bonds and Interest Rate Models
2013-12-17 fExtremes Rmetrics - Extreme Financial Market Data
2013-12-17 g.data Delayed-Data Packages
2013-12-17 iRefR iRefIndex Manager
2013-12-17 reportRx Tools for automatically generating reproducible clinical report
2013-12-17 spacom Spatially weighted context data for multilevel modelling
2013-12-16 highlight Syntax highlighter
2013-12-16 lawstat An R package for biostatistics, public policy, and law
2013-12-16 Metatron Meta-analysis for Classification Data and Correction to Imperfect Reference
2013-12-16 pbdDMAT Programming with Big Data – Distributed Matrix Methods
2013-12-16 RobRSVD Robust Regularized Singular Value Decomposition
2013-12-16 simone Statistical Inference for MOdular NEtworks (SIMoNe)
2013-12-15 fcd Fused Community Detection
2013-12-15 lpc Lassoed principal components for testing significance of features
2013-12-15 missMDA Handling missing values with/in multivariate data analysis (principal component methods)
2013-12-15 MVB Mutivariate Bernoulli log-linear model
2013-12-15 NetSim A Social Networks Simulation Tool in R
2013-12-15 patchDVI Package to patch .dvi files
2013-12-15 ryouready Companion to the 'R your ready?' book
2013-12-15 scuba Scuba diving calculations and decompression models
2013-12-15 svdvisual SVD visualization tools
2013-12-14 bayesGDS Functions to implement Generalized Direct Sampling
2013-12-14 cocorresp Co-correspondence analysis methods
2013-12-14 DunnettTests Software implementation of step-down and step-up Dunnett test procedures
2013-12-14 EMCluster EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
2013-12-14 fortunes R Fortunes
2013-12-14 ggsubplot Explore complex data by embedding subplots within plots
2013-12-14 JoSAE Functions for some unit-level small area estimators and their variances
2013-12-14 LMERConvenienceFunctions A suite of functions to back-fit fixed effects and forward-fit random effects, as well as other miscellaneous functions
2013-12-14 MiST Mixed effects Score Test for continuous outcomes
2013-12-14 pbdBASE Programming with Big Data – Base Wrappers for Distributed Matrices
2013-12-14 phyclust Phylogenetic Clustering (Phyloclustering)
2013-12-14 TapeR Flexible tree taper curves based on semiparametric mixed models
2013-12-14 waterData An R Package for Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic Time Series Data
2013-12-13 adhoc calculate ad hoc distance thresholds for DNA barcoding identification
2013-12-13 amei Adaptive Management of Epidemiological Interventions
2013-12-13 clusterPower Power calculations for cluster-randomized and cluster-randomized crossover trials
2013-12-13 geoRglm geoRglm - a package for generalised linear spatial models
2013-12-13 HIV.LifeTables HIV calibrated model life tables for countries with generalized HIV epidemics
2013-12-13 Kmisc Kevin Miscellaneous
2013-12-13 logconcens Maximum likelihood estimation of a log-concave density based on censored data
2013-12-13 MapGAM Mapping Smoothed Effect Estimates from Individual-Level Data
2013-12-13 Oncotree Estimating oncogenetic trees
2013-12-13 PermAlgo Permutational algorithm to simulate survival data
2013-12-13 plfm Probabilistic latent feature analysis of two-way two-mode frequency data
2013-12-13 R0 Estimation of R0 and real-time reproduction number from epidemics
2013-12-13 rphast R interface to PHAST software for comparative genomics
2013-12-13 simctest Safe implementation of Monte Carlo tests
2013-12-13 skda Sparse (Multicategory) Kernel Discriminant Analysis
2013-12-13 survrec Survival analysis for recurrent event data
2013-12-12 BACCO Bayesian Analysis of Computer Code Output (BACCO)
2013-12-12 betapart Partitioning beta diversity into turnover and nestedness components
2013-12-12 CombinS Constructions method of rectangular PBIB and rectangular right angular PBIB(m) (m= 4,5 and 7) designs
2013-12-12 CorrBin Nonparametrics with clustered binary and multinomial data
2013-12-12 dmt Dependency Modeling Toolkit
2013-12-12 gcbd GPU/CPU Benchmarking in Debian-based systems
2013-12-12 languageR Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics"
2013-12-12 mleur Maximum likelihood unit root test
2013-12-12 multitable Simultaneous manipulation of multiple arrays of data, with data.list objects
2013-12-12 Myrrix Interface to Myrrix. Myrrix is a complete, real-time, scalable clustering and recommender system, evolved from Apache Mahout
2013-12-12 npbr Nonparametric boundary regression
2013-12-12 qmrparser Parser combinator in R
2013-12-12 QTLRel Tools for mapping of quantitative traits of genetically related individuals and calculating identity coefficients from a pedigree
2013-12-12 RcppDE Global optimization by differential evolution in C++
2013-12-12 rworldmap Mapping global data, vector and raster
2013-12-12 sealasso Standard Error Adjusted Adaptive Lasso
2013-12-12 SeleMix Selective Editing via Mixture models
2013-12-12 synbreedData Data for the synbreed package
2013-12-12 tileHMM Hidden Markov Models for ChIP-on-Chip Analysis
2013-12-12 untb ecological drift under the UNTB
2013-12-12 vegan Community Ecology Package
2013-12-11 aidar Tools for reading AIDA (http://aida.freehep.org/) files into R
2013-12-11 catnet Categorical Bayesian Network Inference
2013-12-11 diffractometry Baseline identification and peak decomposition for x-ray diffractograms
2013-12-11 dtw Dynamic time warping algorithms
2013-12-11 etable Easy Table
2013-12-11 ExPosition Exploratory analysis with the singular value decomposition
2013-12-11 giRaph The giRaph package for graph representation in R
2013-12-11 gmm Generalized Method of Moments and Generalized Empirical Likelihood
2013-12-11 grImport Importing Vector Graphics
2013-12-11 InPosition Inference Tests for ExPosition
2013-12-11 mathgraph Directed and undirected graphs
2013-12-11 mlogitBMA Bayesian Model Averaging for Multinomial Logit Models
2013-12-11 mvngGrAd Software for moving grid adjustment in plant breeding field trials
2013-12-11 pgs Precision of Geometric Sampling
2013-12-11 prob Elementary Probability on Finite Sample Spaces
2013-12-11 pvar p-variation, calculation and application
2013-12-11 random True random numbers using random.org
2013-12-11 rhosp Side effect risks in hospital : simulation and estimation
2013-12-11 rpartitions Code for integer partitioning
2013-12-11 rspear Calculate SPEARpesticide in R (http://www.systemecology.eu/SPEAR/index.php)
2013-12-11 selectiongain A tool for calculation and optimization of the expected gain from multi-stage selection
2013-12-11 smfsb SMfSB 2e: Stochastic Modelling for Systems Biology, second edition
2013-12-11 SOAR Memory management in R by delayed assignments
2013-12-11 sphet Estimation of spatial autoregressive models with and without heteroskedastic innovations
2013-12-11 TExPosition Two-table ExPosition
2013-12-11 TInPosition Inference tests for TExPosition
2013-12-11 wle Weighted Likelihood Estimation
2013-12-10 aylmer A generalization of Fisher's exact test
2013-12-10 Bessel Bessel – Bessel Functions Computations and Approximations
2013-12-10 bfp Bayesian Fractional Polynomials
2013-12-10 binomSamSize Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling
2013-12-10 CCM Correlation classification method (CCM)
2013-12-10 cloudUtil Cloud Util Plots
2013-12-10 conics Plot Conics
2013-12-10 corclass Correlational Class Analysis
2013-12-10 CVST Fast Cross-Validation via Sequential Testing
2013-12-10 fTrading Technical Trading Analysis
2013-12-10 fxregime Exchange Rate Regime Analysis
2013-12-10 glmx Generalized Linear Models Extended
2013-12-10 gsl wrapper for the Gnu Scientific Library
2013-12-10 gsscopu Copula Density and 2-D Hazard Estimation using Smoothing Splines
2013-12-10 hyperdirichlet A generalization of the Dirichlet distribution
2013-12-10 iBUGS An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
2013-12-10 lmm Linear mixed models
2013-12-10 MixSim Simulating Data to Study Performance of Clustering Algorithms
2013-12-10 mlegp Maximum Likelihood Estimates of Gaussian Processes
2013-12-10 pathmox Pathmox Approach of Segmentation Trees in Partial Least Squares Path Modeling
2013-12-10 prettyGraphs publication-quality graphics
2013-12-10 SII Calculate ANSI S3.5-1997 Speech Intelligibility Index
2013-12-10 sparseLTSEigen RcppEigen back end for sparse least trimmed squares regression
2013-12-10 SPmlficmcm Semiparametric Maximum likelihood Method for interactions gene-environment in case-mother control-mother designs
2013-12-10 tdthap TDT tests for extended haplotypes
2013-12-09 calibrator Bayesian calibration of complex computer codes
2013-12-09 DIME DIME (Differential Identification using Mixture Ensemble)
2013-12-09 geoCount Analysis and Modeling for Geostatistical Count Data
2013-12-09 hypergeo The hypergeometric function
2013-12-09 vrmlgen Generate 3D visualizations for data exploration on the web
2013-12-08 approximator Bayesian prediction of complex computer codes
2013-12-08 discrimARTs Discrimination of Alternative Reproductive Tactics (ARTs)
2013-12-08 partitions Additive partitions of integers
2013-12-08 plspm Tools for Partial Least Squares Path Modeling (PLS-PM)
2013-12-08 trustOptim Trust region nonlinear optimization, efficient for sparse Hessians
2013-12-08 zic Bayesian Inference for Zero-Inflated Count Models
2013-12-07 elrm Exact Logistic Regression via MCMC
2013-12-07 hflights Flights that departed Houston in 2011
2013-12-07 rtfbs R Transcription Factor Binding Site identification tool
2013-12-07 sortinghat sortinghat
2013-12-06 assertthat Easy pre and post assertions
2013-12-06 memisc Tools for Management of Survey Data, Graphics, Programming, Statistics, and Simulation
2013-12-06 NADA Nondetects And Data Analysis for environmental data
2013-12-06 NlsyLinks Utilities and kinship information for behavior genetics and developmental research using the NLSY
2013-12-05 Brobdingnag Very large numbers in R
2013-12-05 drsmooth Dose-Response Modeling with Smoothing Splines
2013-12-05 DynamicDistribution Dynamically visualized probability distributions and their moments
2013-12-05 elliptic elliptic functions
2013-12-05 GWAtoolbox GWAS Quality Control
2013-12-05 hddplot Use known groups in high-dimensional data to derive scores for plots
2013-12-05 LDExplorer Efficient Whole-Genome LD Based Haplotpe Block Recognition
2013-12-05 MaXact Exact max-type Cochran-Armitage trend test(CATT)
2013-12-05 multivator A multivariate emulator
2013-12-05 ref References for R
2013-12-05 Sample.Size Sample size calculation
2013-12-05 snpStatsWriter Flexible writing of snpStats objects to flat files
2013-12-04 coalescentMCMC MCMC Algorithms for the Coalescent
2013-12-04 goft Tests of fit for some probability distributions
2013-12-04 label.switching Relabelling MCMC outputs of mixture models
2013-12-04 multgee GEE Solver for Correlated Nominal or Ordinal Multinomial Responses
2013-12-04 npmv Nonparametric Comparison of Multivariate Samples
2013-12-04 obs.agree An R package to assess agreement between observers
2013-12-03 ADM3 An Interpretation of the ADM method - automated detection algorithm
2013-12-03 aspect Aspects of Multivariables
2013-12-03 ClustOfVar Clustering of variables
2013-12-03 DEMEtics Evaluating the genetic differentiation between populations based on Gst and D values
2013-12-03 digest Create cryptographic hash digests of R objects
2013-12-03 ecodist Dissimilarity-based functions for ecological analysis
2013-12-03 Interpol.T Hourly interpolation of multiple temperature daily series
2013-12-03 iplots iPlots - interactive graphics for R
2013-12-03 LogicReg Logic Regression
2013-12-03 mefa Multivariate Data Handling in Ecology and Biogeography
2013-12-03 netClass netClass: An R Package for Network-Based Biomarker Discovery
2013-12-03 png Read and write PNG images
2013-12-03 randomizationInference Flexible Randomization-Based Inference
2013-12-03 RCassandra R/Cassandra interface
2013-12-03 weirs A Hydraulics Package to Compute Open-Channel Flow over Weirs
2013-12-02 BCEA Bayesian Cost Effectiveness Analysis
2013-12-02 dvn Access to The Dataverse Network APIs
2013-12-02 FHtest Tests for right and interval-censored survival data based on the Fleming-Harrington class
2013-12-02 GrassmannOptim Grassmann Manifold Optimization
2013-12-02 mRm An R package for conditional maximum likelihood estimation in mixed Rasch models
2013-12-02 OrdNor Concurrent generation of ordinal and normal data with given correlation matrix and marginal distributions
2013-12-02 PoiClaClu Classification and clustering of sequencing data based on a Poisson model
2013-12-02 smaa Stochastic Multi-criteria Acceptability Analysis
2013-12-02 superMDS Implements the supervised multidimensional scaling (superMDS) proposal of Witten and Tibshirani (2011)
2013-12-01 exptest Tests for Exponentiality
2013-12-01 hergm Hierarchical Exponential-Family Random Graph Models with Local Dependence
2013-12-01 maptpx MAP estimation of topic models
2013-12-01 nCal Nonlinear Calibration
2013-11-30 adephylo adephylo: exploratory analyses for the phylogenetic comparative method
2013-11-29 caper Comparative Analyses of Phylogenetics and Evolution in R
2013-11-29 cycloids cycloids
2013-11-29 drc Analysis of dose-response curve data
2013-11-28 alphahull Generalization of the convex hull of a sample of points in the plane
2013-11-28 aml Adaptive Mixed LASSO
2013-11-28 ergm.count Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges
2013-11-28 ergm.userterms User-specified terms for the statnet suite of packages
2013-11-28 hwde Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci
2013-11-28 LCFdata Data sets for package “LMERConvenienceFunctions”
2013-11-28 nodeHarvest Node Harvest for regression and classification
2013-11-28 ROI R Optimization Infrastructure
2013-11-28 ROI.plugin.glpk ROI-plugin GLPK
2013-11-28 ROI.plugin.quadprog ROI-plugin quadprog
2013-11-28 ROI.plugin.symphony ROI-plugin symphony
2013-11-28 ScottKnott The ScottKnott Clustering Algorithm
2013-11-28 statnet.common Common R Scripts and Utilities Used by the Statnet Project Software
2013-11-27 kinfit Routines for fitting kinetic models to chemical degradation data
2013-11-27 prognosticROC Prognostic ROC curves for evaluating the predictive capacity of a binary test
2013-11-27 RECSO Robust and Efficient Analysis using Control function approach, of a Secondary Outcome
2013-11-27 waldwolf Wald-Wolfowitz trend test
2013-11-26 asd Simulations for adaptive seamless designs
2013-11-26 hda Heteroscedastic Discriminant Analysis
2013-11-26 LICORS Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data
2013-11-26 snplist Tools to create Gene Sets
2013-11-25 dils Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links
2013-11-25 FastImputation Learn from training data then quickly fill in missing data
2013-11-25 frontiles Partial Frontier Efficiency Analysis
2013-11-25 humanFormat Human-friendly formatting functions
2013-11-25 intamap procedures for automated interpolation
2013-11-25 RODBC ODBC Database Access
2013-11-24 boxplotdbl Double Box Plot for Two-Axes Correlation
2013-11-24 bpca Biplot of Multivariate Data Based on Principal Components Analysis
2013-11-24 fdth Frequency Distribution Tables, Histograms and Poligons
2013-11-24 HandTill2001 Multiple Class Area under ROC Curve
2013-11-23 demoKde Kernel Density Estimation for Demonstration Purposes
2013-11-23 growthmodels Nonlinear Growth Models
2013-11-22 BayesXsrc R Package Distribution of the BayesX C++ Sources
2013-11-22 BMS Bayesian Model Averaging Library
2013-11-22 DoubleCone Test against parametric regression function
2013-11-22 GMMBoost Likelihood-based Boosting for Generalized mixed models
2013-11-22 mixer Random graph clustering
2013-11-22 msgpackR A library to serialize or unserialize data in MessagePack format
2013-11-21 BSagri Statistical methods for safety assessment in agricultural field trials
2013-11-21 dbstats Distance-based statistics (dbstats)
2013-11-21 lestat A package for LEarning STATistics
2013-11-21 ncf spatial nonparametric covariance functions
2013-11-21 osmar OpenStreetMap and R
2013-11-21 PubBias Performs simulation study to look for publication bias, using a technique described by Ioannidis and Trikalinos; Clin Trials. 2007;4(3):245-53
2013-11-20 ade4 Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences
2013-11-20 ggHorizon An implementation of Horizon Graph
2013-11-20 hypred Simulation of genomic data in applied genetics
2013-11-20 hysteresis Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses
2013-11-20 magic create and investigate magic squares
2013-11-20 MsatAllele Visualizes the scoring and binning of microsatellite fragment sizes
2013-11-20 PearsonDS Pearson Distribution System
2013-11-20 polspline Polynomial spline routines
2013-11-20 sensitivitymv Sensitivity Analysis in Observational Studies
2013-11-20 vegclust Fuzzy clustering of vegetation data
2013-11-20 witness This package fits eyewitness data using Clark's (2003) WITNESS model
2013-11-19 bgmm Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling
2013-11-19 devEMF EMF graphics output device
2013-11-19 gcdnet LASSO and (adaptive) Elastic-Net penalized least squares, logistic regression, HHSVM and squared hinge loss SVM using a fast GCD algorithm
2013-11-19 lokern Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
2013-11-19 mlDNA Machine Learning-based Differential Network Analysis of Transcriptome Data
2013-11-19 somebm some Brownian motions simulation functions
2013-11-19 VLF Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records
2013-11-18 bigmemory Manage massive matrices with shared memory and memory-mapped files
2013-11-18 codadiags Markov chain Monte Carlo burn-in based on "bridge" statistics
2013-11-18 eqs2lavaan EQS Output Conversion to lavaan Functions
2013-11-18 feature Feature significance for multivariate kernel density estimation
2013-11-18 MetStaT Statistical metabolomics tools
2013-11-18 rbefdata BEFdata R package
2013-11-17 glmmML Generalized linear models with clustering
2013-11-17 MKmisc Miscellaneous Functions from M. Kohl
2013-11-17 RWinEdt R Interface to WinEdt
2013-11-17 vscc Variable selection for clustering and classification
2013-11-16 BCEs0 Bayesian models for cost-effectiveness analysis in the presence of structural zero costs
2013-11-16 contrast A collection of contrast methods
2013-11-16 grade Binary Grading functions for R
2013-11-16 LPCM Local principal curve methods
2013-11-16 MiClip A Model-based Approach to Identify Binding Sites in CLIP-Seq Data
2013-11-16 spBayes Univariate and Multivariate Spatial-temporal Modeling
2013-11-15 avgrankoverlap Average Rank Overlap
2013-11-15 DiceView Plot methods for computer experiments design and surrogate
2013-11-15 DiscriMiner Tools of the Trade for Discriminant Analysis
2013-11-15 OPI Open Perimetry Interface
2013-11-15 PropScrRand Propensity score methods for assigning treatment in randomized trials
2013-11-15 VizOR Graphical visualization tools for complex observational data with focus on health sciences (VizOR)
2013-11-14 gvcm.cat Regularized Categorial Effects/Categorial Effect Modifiers/Continuous/Smooth effects in GLMs
2013-11-14 maxent Low-memory Multinomial Logistic Regression with Support for Text Classification
2013-11-14 Rvmmin Variable metric nonlinear function minimization with bounds constraints
2013-11-14 tester Tests and checks characteristics of R objects
2013-11-13 diaplt Beads Summary Plot of Ranges
2013-11-13 EMMIXskew The EM Algorithm and Skew Mixture Distribution
2013-11-13 HaploSim Functions to simulate haplotypes
2013-11-13 metacom Analysis of the 'elements of metacommunity structure'
2013-11-13 mreg Fits regression models when the outcome is partially missing
2013-11-13 MVR Mean-Variance Regularization
2013-11-13 PAGWAS Pathway analysis methods for genomewide association data
2013-11-13 Rambo The Random Subgraph Model
2013-11-13 Rsymphony Symphony in R
2013-11-13 StreamMetabolism Stream Metabolism-A package for calculating single station metabolism from diurnal Oxygen curves
2013-11-12 cghseg Segmentation methods for array CGH analysis
2013-11-12 colorfulVennPlot Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data
2013-11-12 distory Distance Between Phylogenetic Histories
2013-11-12 NSM3 An R package to accompany Hollander, Wolfe, and Chicken - Nonparametric Statistical Methods, Third Edition
2013-11-12 ramps Bayesian Geostatistical Modeling with RAMPS
2013-11-12 robustfa An Object Oriented Solution for Robust Factor Analysis
2013-11-12 rtf Rich Text Format (RTF) Output
2013-11-11 clv Cluster Validation Techniques
2013-11-11 GenKern Functions for generating and manipulating binned kernel density estimates
2013-11-11 gWidgetsRGtk2 Toolkit implementation of gWidgets for RGtk2
2013-11-11 JADE JADE and other BSS methods as well as some BSS performance criteria
2013-11-11 lymphclon Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates
2013-11-11 rGammaGamma Gamma convolutions for methylation array background correction
2013-11-11 sft Functions for Systems Factorial Technology Analysis of Data
2013-11-10 AdapEnetClass A class of adaptive elastic net methods for censored data
2013-11-10 FusedPCA Community Detection via Fused Principal Component Analysis
2013-11-09 aqfig Functions to help display air quality model output and monitoring data
2013-11-09 dielectric Defines some physical constants and dielectric functions commonly used in optics, plasmonics
2013-11-09 edrGraphicalTools Provides tools for dimension reduction methods
2013-11-09 flexCWM Flexible Cluster-Weighted Modeling
2013-11-09 powerMediation Power/Sample size calculation for mediation analysis, simple linear regression, logistic regression, or longitudinal study
2013-11-08 brglm Bias reduction in binomial-response generalized linear models
2013-11-08 circular Circular Statistics
2013-11-08 CSS Extract information from an html document with CSS selectors
2013-11-08 optextras A set of tools to support optimization methods (function minimization with at most bounds and masks)
2013-11-08 quint Qualitative Interaction Trees
2013-11-08 sampling Survey Sampling
2013-11-08 sdcMicroGUI Graphical user interface for package sdcMicro
2013-11-08 stima Simultaneous Threshold Interaction Modeling Algorithm
2013-11-07 localdepth Local Depth
2013-11-07 pcse Panel-Corrected Standard Error Estimation in R
2013-11-07 PERregress Regression Functions and Datasets
2013-11-07 RNiftyReg Medical image registration using the NiftyReg library
2013-11-07 SPEI Calculation of the Standardised Precipitation-Evapotranspiration Index
2013-11-06 ABCoptim Implementation of Artificial Bee Colony (ABC) Optimization
2013-11-06 AGSDest Estimation in adaptive group sequential trials
2013-11-06 CPMCGLM Correction of the pvalue after multiple coding
2013-11-06 Hotelling Hotelling's T-squared test and variants
2013-11-06 ISBF Iterative Selection of Blocks of Features - ISBF
2013-11-06 learningr Data and functions to accompany the book "Learning R"
2013-11-06 PoweR Computation of power and level tables for hypothesis tests
2013-11-06 Rclusterpp Linkable C++ clustering
2013-11-06 reporttools Generate LaTeX tables of descriptive statistics
2013-11-06 RGenetics R packages for genetics research
2013-11-06 sparseHessianFD Numerical estimation of sparse Hessians using ACM TOMS Algorithm 636
2013-11-05 aplpack Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions
2013-11-05 bigtabulate table-, tapply-, and split-like functionality for matrix and big.matrix objects
2013-11-05 comparison Multivariate likelihood ratio calculation and evaluation
2013-11-05 ConConPiWiFun This package contains an implementation of continuous convex piecewise (linear and quadratic) functions
2013-11-05 demi Differential Expression from Multiple Indicators
2013-11-05 EpiContactTrace Epidemiological tool for contact tracing
2013-11-05 glassomix High dimensional Mixture Graph Models selection
2013-11-05 IsoGene Testing for monotonic relationship between gene expression and doses in a microarray experiment
2013-11-05 krm Kernel-based Regression Models
2013-11-05 shinyAce Ace editor bindings for Shiny
2013-11-05 sparseMVN Multivariate normal functions for sparse covariate and precision matrices
2013-11-05 sspline Smoothing Splines on the Sphere
2013-11-04 BenfordTests Statistical Tests for Evaluating Conformity to Benford's Law
2013-11-04 crp.CSFP CreditRisk+ portfolio model
2013-11-04 gskat GEE_KM
2013-11-04 isva Independent Surrogate Variable Analysis
2013-11-04 ktsolve Configurable function for solving families of nonlinear equations
2013-11-04 matie Measuring Association and Testing Independence Efficiently
2013-11-04 mvShapiroTest Generalized Shapiro-Wilk test for multivariate normality
2013-11-04 npsp Nonparametric spatial (geo)statistics
2013-11-04 smam Statistical Modeling of Animal Movements
2013-11-04 someMTP Some Multiple Testing Procedures
2013-11-04 termstrc Zero-coupon Yield Curve Estimation
2013-11-03 kernlab Kernel-based Machine Learning Lab
2013-11-03 MonoPoly Functions to fit monotone polynomials
2013-11-03 pedigree Pedigree functions
2013-11-02 BayesCR Bayesian analysis of censored linear regression models with scale mixtures of normal (SMN) distributions
2013-11-02 prinsimp Finding and plotting simple basis vectors for multivariate data
2013-11-02 RCPmod Regions of common profiles modelling with mixtures-of-experts
2013-11-01 ccaPP (Robust) canonical correlation analysis via projection pursuit
2013-11-01 PAGI The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways
2013-11-01 rgcvpack R Interface for GCVPACK Fortran Package
2013-10-31 ACD Categorical data analysis with complete or missing responses
2013-10-31 CIFsmry Weighted summary of cumulative incidence functions
2013-10-31 DDHFm Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
2013-10-31 gllm Generalised log-linear model
2013-10-31 lmf Functions for estimation and inference of selection in age-structured populations
2013-10-31 MRsurv A multiplicative-regression model for relative survival
2013-10-31 sExtinct Calculates the historic date of extinction given a series of sighting events
2013-10-31 SpatialNP Multivariate nonparametric methods based on spatial signs and ranks
2013-10-31 varSelectIP Objective Bayes Model Selection
2013-10-30 EnvStats Package for Environmental Statistics, including US EPA Guidance
2013-10-30 mbbefd MBBEFD distribution and exposure curve
2013-10-30 RCircos Circos 2D Track Plot
2013-10-30 RVsharing RVsharing
2013-10-30 SuppDists Supplementary distributions
2013-10-29 cccd Class Cover Catch Digraphs
2013-10-29 cluster.datasets Cluster Analysis Data Sets
2013-10-29 gWidgets2RGtk2 Implementation of gWidgets2 for RGtk2 package
2013-10-29 gWidgets2tcltk Toolkit implementation of gWidgets2 for tcltk package
2013-10-29 Matching Multivariate and Propensity Score Matching with Balance Optimization
2013-10-29 strucchange Testing, Monitoring, and Dating Structural Changes
2013-10-29 TraMineRextras Extras for use with the TraMineR package
2013-10-28 BayesSAE Bayesian Analysis of Small Area Estimation
2013-10-28 erboost Nonparametric Multiple Expectile Regression via ER-Boost
2013-10-28 fingerprint Functions to operate on binary fingerprint data
2013-10-28 IPSUR Introduction to Probability and Statistics Using R
2013-10-27 mar1s Multiplicative AR(1) with Seasonal Processes
2013-10-26 bcpa Behavioral change point analysis of animal movement
2013-10-26 cgwtools My collection of useful tools
2013-10-26 clpAPI R Interface to C API of COIN-OR Clp
2013-10-26 highr Syntax highlighting for R
2013-10-26 testit A simple package for testing R packages
2013-10-25 CARrampsOcl Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation
2013-10-25 clustvarsel Variable Selection for Model-Based Clustering
2013-10-25 DCL Claims Reserving under the Double Chain Ladder Model
2013-10-25 dgof Discrete Goodness-of-Fit Tests
2013-10-25 hdlm Fitting High Dimensional Linear Models
2013-10-25 kmconfband Kaplan-Meier Simultaneous Confidence Band for the Survivor Function
2013-10-25 SPARQL SPARQL client
2013-10-24 BASIX BASIX: An efficient C/C++ toolset for R
2013-10-24 fastcox Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm
2013-10-24 mcgibbsit Warnes and Raftery's MCGibbsit MCMC diagnostic
2013-10-24 MplusAutomation Automating Mplus Model Estimation and Interpretation
2013-10-24 sybilEFBA Using gene expression data to improve flux balance analysis predictions
2013-10-23 fbRanks Association Football (Soccer) Ranking via Poisson Regression
2013-10-23 globalGSA Global Gene-Set Analysis for Association Studies
2013-10-23 MFHD Multivariate Functional Halfspace Depth
2013-10-23 NPCirc Nonparametric Circular Methods
2013-10-23 pairwiseCI Confidence intervals for two sample comparisons
2013-10-23 RForcecom RForcecom provides the connection to Force.com and Salesforce.com from R
2013-10-22 ACTCD Asymptotic Classification Theory for Cognitive Diagnosis
2013-10-22 crch Censored Regression with Conditional Heteroscedasticity
2013-10-22 directPA Direction Pathway Analysis
2013-10-22 HDtweedie The Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm
2013-10-22 maxLik Maximum Likelihood Estimation
2013-10-22 Rmisc Rmisc: Ryan Miscellaneous
2013-10-22 smart Sparse Multivariate Analysis via Rank Transformation
2013-10-22 snapshot Gadget N-body cosmological simulation code snapshot I/O utilities
2013-10-22 sphereplot Spherical plotting
2013-10-22 sss Tools for importing files in the triple-s .(Standard Survey Structure) format
2013-10-22 surveydata Tools to manipulate survey data
2013-10-21 datacheck Tools for checking data consistency
2013-10-21 evobiR evobiR: evolutionary biology in R
2013-10-21 lomb Lomb-Scargle Periodogram
2013-10-21 mQTL Metabolomic Quantitative Trait Locus Mapping
2013-10-21 shrink Global, Parameterwise, and Joint Post-Estimation Shrinkage
2013-10-21 wavethresh Wavelets statistics and transforms
2013-10-20 RRF Regularized Random Forest
2013-10-19 ACNE Affymetrix SNP probe-summarization using non-negative matrix factorization
2013-10-19 hdrcde Highest density regions and conditional density estimation
2013-10-19 RIGHT R Interactive Graphics via HTml
2013-10-18 datautils Support functions for packages VBmix, semisupKernelPCA, and patchPlot
2013-10-18 locits Test of stationarity and localized autocovariance
2013-10-18 RcmdrPlugin.UCA UCA Rcmdr Plug-in
2013-10-17 aroma.cn Copy-number analysis of large microarray data sets
2013-10-17 calmate CalMaTe - Improved allele-specific copy number of SNP arrays for downstream segmentation
2013-10-17 knitrBootstrap Knitr Bootstrap framework
2013-10-17 OIsurv Survival analysis supplement to OpenIntro guide
2013-10-17 Rcell Microscopy Based Cytometry Data Analysis Package
2013-10-17 RTConnect Tools for analyzing sales report files of iTunes Connect
2013-10-16 DAAGxtras Data Sets and Functions, supplementary to DAAG
2013-10-16 lxb Fast LXB file reader
2013-10-16 mc2d Tools for Two-Dimensional Monte-Carlo Simulations
2013-10-16 NormalGamma Normal-gamma convolution model
2013-10-16 regpro Nonparametric Regression
2013-10-15 corrplot Visualization of a correlation matrix
2013-10-15 cvq2 Calculate the predictive squared correlation coefficient
2013-10-15 ppmlasso PPM-LASSO: Point process models with LASSO penalties
2013-10-15 Segmentor3IsBack A Fast Segmentation Algorithm
2013-10-15 zoom A spatial data visualization tool
2013-10-14 costat Time series costationarity determination
2013-10-14 EMMAgeo End-member modelling algorithm and supporting functions for grain-size analysis
2013-10-13 assertive Readable check functions to ensure code integrity
2013-10-13 Correlplot A collection of functions for graphing correlation matrices
2013-10-13 shinyRGL Shiny Wrappers for RGL
2013-10-12 CINID Curculionidae INstar IDentification
2013-10-12 cpa Confirmatory Path Analysis through the d-sep tests
2013-10-12 FITSio FITS (Flexible Image Transport System) utilities
2013-10-12 mcGlobaloptim Global optimization using Monte Carlo and Quasi Monte Carlo simulation
2013-10-12 phia Post-Hoc Interaction Analysis
2013-10-12 rdd Regression Discontinuity Estimation
2013-10-12 rsig Robust Signature Selection for Survival Outcomes
2013-10-12 symbolicDA Analysis of symbolic data
2013-10-11 alr4 Data to accompany Applied Linear Regression 4rd edition
2013-10-11 GlobalDeviance Global Deviance Permutation Tests
2013-10-11 ICS Tools for Exploring Multivariate Data via ICS/ICA
2013-10-11 LOST Missing morphometric data simulation and estimation
2013-10-11 MRwarping Multiresolution time warping for functional data
2013-10-11 OptHedging Estimation of value and hedging strategy of call and put options
2013-10-11 orsk Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information
2013-10-11 RcmdrPlugin.HH Rcmdr support for the HH package
2013-10-10 incReg Incremental Multivariate Regression
2013-10-10 MCPAN Multiple comparisons using normal approximation
2013-10-10 rseedcalc Estimating the proportion of genetically modified stacked seeds in seedlots via multinomial group testing
2013-10-10 TestSurvRec Statistical tests to compare two survival curves with recurrent events
2013-10-10 VIM Visualization and Imputation of Missing Values
2013-10-09 binMto Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions
2013-10-09 gProfileR R interface to the g:Profiler toolkit
2013-10-09 popsom Self-Organizing Maps With Population Based Convergence Criterion
2013-10-09 ScrabbleScore Calculates Scrabble score for strings
2013-10-08 bmem Mediation analysis with missing data using bootstrap
2013-10-08 caroline A Collection of Database, Data Structure, Visualization, and Utility Functions for R
2013-10-08 RenextGUI GUI for Renext
2013-10-07 censNID censored NID samples
2013-10-07 migration.indices Migration indices
2013-10-05 cold cold: a package for Count Longitudinal Data
2013-10-05 DAAGbio Data Sets and Functions, for demonstrations with expression arrays and gene sequences
2013-10-05 fdrci Permutation-based FDR Point and Confidence Interval Estimation
2013-10-05 servr A simple HTTP server in R
2013-10-04 ICC Functions facilitating the estimation of the Intraclass Correlation Coefficient
2013-10-04 kitagawa Spectral response of water wells to harmonic strain and pressure
2013-10-04 Renext Renewal method for extreme values extrapolation
2013-10-04 TDD Time-Domain Deconvolution of Seismometer Response
2013-10-03 daewr Design and Analysis of Experiments with R
2013-10-03 ggmcmc Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference
2013-10-03 HEAT Health Effects of Air Pollution and Temperature (HEAT)
2013-10-03 powerAnalysis Power analysis in experimental design
2013-10-03 proftools Profile Output Processing Tools for R
2013-10-03 riv Robust instrumental variables estimator
2013-10-03 sparseBC Sparse biclustering of transposable data
2013-10-02 SpeciesMix Fit Mixtures of Archetype species
2013-10-01 dcmle Hierarchical Models Made Easy with Data Cloning
2013-10-01 isdals Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences
2013-10-01 IsotopeR Stable isotope analysis
2013-10-01 kulife Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen
2013-10-01 multitaper Multitaper spectral analysis tools
2013-10-01 PsumtSim Simulations of grouped responses relative to baseline
2013-09-30 AUC Threshold independent performance measures for probabilistic classifiers
2013-09-30 colorspace Color Space Manipulation
2013-09-30 dclone Data Cloning and MCMC Tools for Maximum Likelihood Methods
2013-09-30 LCA Localised Co-Dependency Analysis
2013-09-30 ordinal Regression Models for Ordinal Data
2013-09-30 ParentOffspring Conduct the Parent-Offspring Test Using Monomorphic SNP Markers
2013-09-30 plan Tools for project planning
2013-09-30 topsis TOPSIS method for multiple-criteria decision making (MCDM)
2013-09-29 coloc Colocalisation tests of two genetic traits
2013-09-29 elliplot Ellipse Summary Plot of Quantiles
2013-09-29 TScompare TSdbi Comparison
2013-09-29 TSdata TSdbi Illustration
2013-09-29 TSdbi TSdbi (Time Series Database Interface)
2013-09-29 TSfame TSdbi extensions for fame
2013-09-29 TSgetSymbol TSdbi extension to connect with getSymbols
2013-09-29 TShistQuote TSdbi extensions for get.hist.quote
2013-09-29 TSMySQL TSdbi extensions for MySQL
2013-09-29 TSodbc TSdbi extensions for ODBC
2013-09-29 TSPostgreSQL TSdbi extensions for PostgreSQL
2013-09-29 TSSQLite TSdbi extensions for SQLite
2013-09-29 TSxls TSdbi extension to connect to spreadsheets
2013-09-29 TSzip TSdbi extension to connect to zip files
2013-09-28 adagio Discrete and Global Optimization Routines
2013-09-27 BAYSTAR On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
2013-09-27 FitARMA FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
2013-09-27 flexmix Flexible Mixture Modeling
2013-09-27 MRMR Multivariate Regression Models for Reserving
2013-09-27 pan Multiple imputation for multivariate panel or clustered data
2013-09-27 rDNA R Bindings for the Discourse Network Analyzer
2013-09-27 snow Simple Network of Workstations
2013-09-26 simecol Simulation of ecological (and other) dynamic systems
2013-09-26 spsurvey Spatial Survey Design and Analysis
2013-09-26 ssvd Sparse SVD
2013-09-25 sos Search contributed R packages, sort by package
2013-09-25 SubCultCon Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures
2013-09-25 wgsea Wilcoxon based gene set enrichment analysis
2013-09-24 asypow Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
2013-09-24 diffEq Functions from the book Solving Differential Equations in R
2013-09-24 enRich An R package for the analysis of multiple ChIP-seq data
2013-09-24 exactRankTests Exact Distributions for Rank and Permutation Tests
2013-09-24 isa2 The Iterative Signature Algorithm
2013-09-24 Map2NCBI Mapping Markers to the Nearest Genomic Feature
2013-09-24 NPHMC Sample Size Calculation for the Proportional Hazards Mixture Cure Model
2013-09-24 popReconstruct Reconstruct population counts, fertility, mortality and migration rates of human populations of the recent past
2013-09-24 tframePlus Time Frame coding kernel extensions
2013-09-23 adehabitatMA Tools to Deal with Raster Maps
2013-09-23 animalTrack Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data
2013-09-23 EffectsRelBaseline Test changes of a grouped response relative to baseline
2013-09-23 GUIDE GUI for DErivatives in R
2013-09-23 hzar Hybrid Zone Analysis using R
2013-09-23 LSMonteCarlo American options pricing with Least Squares Monte Carlo method
2013-09-23 quantreg Quantile Regression
2013-09-23 SAMURAI Sensitivity Analysis of a Meta-analysis with Unpublished but Registered Analytical Investigations
2013-09-23 ZeligChoice Zelig Choice Models
2013-09-23 ZeligGAM General Additive Models for Zelig
2013-09-23 ZeligMultilevel Multilevel Regressions for Zelig
2013-09-22 AtelieR A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests
2013-09-22 bootfs Use multiple feature selection algorithms to derive robust feature sets for two or multiclass classification problems
2013-09-22 lazy Lazy Learning for Local Regression
2013-09-22 MVPARTwrap MVPARTwrap: Additional features for package mvpart
2013-09-22 prevalence The prevalence package
2013-09-22 R2admb ADMB to R interface functions
2013-09-21 boss Boosted One-Step Statistics: Fast and accurate approximations for GLM, GEE and Mixed models for use in GWAS
2013-09-21 cocor Comparing correlations
2013-09-21 cocron Statistical comparisons of two or more alpha coefficients
2013-09-21 CrypticIBDcheck Identifying cryptic relatedness in genetic association studies
2013-09-21 dataQualityR Performs variable level data quality checks and generates summary statistics
2013-09-21 gmodels Various R programming tools for model fitting
2013-09-21 LDheatmap Graphical display of pairwise linkage disequilibria between SNPs
2013-09-21 longpower Sample size calculations for longitudinal data
2013-09-21 phmm Proportional Hazards Mixed-effects Model (PHMM)
2013-09-21 Zelig Everyone's Statistical Software
2013-09-20 beeswarm The bee swarm plot, an alternative to stripchart
2013-09-20 mclogit Mixed Conditional Logit
2013-09-20 svapls Surrogate variable analysis using partial least squares in a gene expression study
2013-09-20 TriMatch Propensity Score Matching of Non-Binary Treatments
2013-09-19 Biograph Explore life histories
2013-09-19 CNVassoc Association analysis of CNV data
2013-09-19 fail File Abstraction Interface Layer (FAIL) mimicking a key-value store
2013-09-19 genMOSS Functions for the Bayesian analysis of GWAS data
2013-09-19 pheatmap Pretty Heatmaps
2013-09-19 prLogistic Estimation of Prevalence Ratios using Logistic Models
2013-09-19 qtlhot Inference for QTL Hotspots
2013-09-19 zyp Zhang + Yue-Pilon trends package
2013-09-18 Dodge Functions for Acceptance Sampling Ideas originated by H.F. Dodge
2013-09-18 dynaTree Dynamic trees for learning and design
2013-09-17 cgdsr R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
2013-09-17 GABi Framework for Generalized Subspace Pattern Mining
2013-09-16 akima Interpolation of irregularly spaced data
2013-09-16 betareg Beta Regression
2013-09-16 HMPTrees Statistical Object Oriented Data Analysis of RDP-based Taxonomic trees from Human Microbiome Data: Modeling, Visualization, and Two-Group Comparison
2013-09-16 R4dfp 4dfp MRI Image Read and Write Routines
2013-09-16 SMCRM Data Sets for Statistical Methods in Customer Relationship Management by Kumar and Petersen (2012)
2013-09-16 speccalt Alternative spectral clustering, with automatic estimation of k
2013-09-16 spgwr Geographically weighted regression
2013-09-16 tripack Triangulation of irregularly spaced data
2013-09-16 yhat Interpreting Regression Effects
2013-09-15 forensim Statistical tools for the interpretation of forensic DNA mixtures
2013-09-15 GPCSIV GPCSIV, Generalized Principal Component of Symbolic Interval variables
2013-09-14 EILA Efficient Inference of Local Ancestry
2013-09-14 RcmdrPlugin.qual Rcmdr plugin for quality control course
2013-09-14 RobRex Optimally robust influence curves for regression and scale
2013-09-14 ROptRegTS Optimally robust estimation for regression-type models
2013-09-13 CLAG An unsupervised non hierarchical clustering algorithm handling biological data
2013-09-13 Daim Diagnostic accuracy of classification models
2013-09-13 distrDoc Documentation for packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod, and distrEllipse
2013-09-13 distrEllipse S4 classes for elliptically contoured distributions
2013-09-13 distrEx Extensions of package distr
2013-09-13 distrRmetrics Package distr classes for distributions from Rmetrics
2013-09-13 distrTeach Extensions of package distr for teaching Stochastics/Statistics in secondary school
2013-09-13 distrTEst Estimation and Testing classes based on package distr
2013-09-13 DoE.wrapper Wrapper package for design of experiments functionality
2013-09-13 EcoTroph EcoTroph R package
2013-09-13 ez Easy analysis and visualization of factorial experiments
2013-09-13 labdsv Ordination and Multivariate Analysis for Ecology
2013-09-13 papeR A toolbox for writing Sweave or other LaTeX-based papers and reports
2013-09-13 rbiouml Functions to interact with BioUML server
2013-09-13 RobAStBase Robust Asymptotic Statistics
2013-09-13 RobLox Optimally robust influence curves and estimators for location and scale
2013-09-13 RobLoxBioC Infinitesimally robust estimators for preprocessing omics data
2013-09-13 ROptEst Optimally robust estimation
2013-09-13 ROptEstOld Optimally robust estimation - old version
2013-09-13 startupmsg Utilities for start-up messages
2013-09-12 distrMod Object oriented implementation of probability models
2013-09-12 distrSim Simulation classes based on package distr
2013-09-12 LARF LARF: Local Average Response Functions for Estimating Treatment Effects
2013-09-12 logcondens.mode Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode
2013-09-12 MLRMPA A package for Multilinear Regression Model Population Analysis
2013-09-12 optpart Optimal partitioning of similarity relations
2013-09-12 pander An R pandoc writer
2013-09-12 phalen Phalen Algorithms and Functions
2013-09-11 pastis Phylogenetic Assembly with Soft Taxonomic Inferences
2013-09-11 RandVar Implementation of random variables
2013-09-11 relaimpo Relative importance of regressors in linear models
2013-09-10 calibrate Calibration of Scatterplot and Biplot Axes
2013-09-10 FREQ FREQ: Estimate population size from capture frequencies
2013-09-10 NEff Calculating effective sizes based on known demographic parameters of a population
2013-09-10 psidR Build panel data sets from PSID raw data
2013-09-10 PSM Non-Linear Mixed-Effects modelling using Stochastic Differential Equations
2013-09-10 rgrs Functions to make R usage in social sciences easier (in french)
2013-09-10 rknn Random KNN Classification and Regression
2013-09-10 smdata Data to accompany Smithson & Merkle, 2013
2013-09-10 splusTimeSeries Time Series from S-PLUS
2013-09-09 camel Calibrated Machine Learning
2013-09-09 DendSer Dendrogram seriation: ordering for visualisation
2013-09-09 onemap Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses
2013-09-08 RMongo MongoDB Client for R
2013-09-08 ttwa Travel To Work Area
2013-09-07 ALSCPC Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form
2013-09-06 NMOF Numerical Methods and Optimization in Finance
2013-09-06 polysat Tools for Polyploid Microsatellite Analysis
2013-09-05 CommonTrend Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics
2013-09-05 excel.link Convenient way to work with data in Microsoft Excel
2013-09-05 G1DBN A package performing Dynamic Bayesian Network inference
2013-09-05 openNLPdata Apache OpenNLP Jars and Basic English Language Models
2013-09-05 survPresmooth Presmoothed Estimation in Survival Analysis
2013-09-04 kelvin Calculate solutions to the Kelvin differential equation using Bessel functions
2013-09-04 laser Likelihood Analysis of Speciation/Extinction Rates from Phylogenies
2013-09-04 pavo Perceptual analysis, visualization and organization of spectral color data in R
2013-09-04 PF Prevented fraction
2013-09-04 rio A Swiss-army knife for data file I/O
2013-09-04 tiff Read and write TIFF images
2013-09-04 uuid Tools for generating and handling of UUIDs
2013-09-03 BCDating Business Cycle Dating and Plotting Tools - BCDating
2013-09-03 expoTree Calculate density dependent likelihood of a phylogenetic tree
2013-09-03 genetics Population Genetics
2013-09-03 ggdendro Tools for extracting dendrogram and tree diagram plot data for use with ggplot
2013-09-03 inlinedocs Convert inline comments to documentation
2013-09-03 RFGLS Rapid Feasible Generalized Least Squares
2013-09-03 sparc Semiparametric Generalized Linear Models
2013-09-02 ibr Iterative Bias Reduction
2013-09-02 modeltools Tools and Classes for Statistical Models
2013-09-02 scrime Analysis of High-Dimensional Categorical Data such as SNP Data
2013-09-02 tabplotd3 Tabplotd3, interactive inspection of large data
2013-09-01 classInt Choose univariate class intervals
2013-09-01 spgrass6 Interface between GRASS 6+ geographical information system and R
2013-09-01 splancs Spatial and Space-Time Point Pattern Analysis
2013-08-31 Grid2Polygons Convert Spatial Grids to Polygons
2013-08-31 hisemi Hierarchical Semiparametric Regression of Test Statistics
2013-08-31 lrmest Different types of estimators to deal with multicollinearity
2013-08-31 minpack.lm R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK, plus support for bounds
2013-08-31 varComp Variance component models
2013-08-30 fExpressCertificates fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
2013-08-30 genMOSSplus Application of MOSS algorithm to genome-wide association study (GWAS)
2013-08-30 getopt C-like getopt behavior
2013-08-29 automap Automatic interpolation package
2013-08-29 rrcovHD Robust multivariate Methods for High Dimensional Data
2013-08-29 rrcovNA Scalable Robust Estimators with High Breakdown Point for Incomplete Data
2013-08-28 mmap Map Pages of Memory
2013-08-28 rainbow Rainbow plots, bagplots and boxplots for functional data
2013-08-28 RStorm Simulate and Develop Streaming Processing in [R]
2013-08-27 EMVC Entropy Minimization over Variable Clusters (EMVC)
2013-08-27 soil.spec Soil spectral file conversion, data exploration and regression functions
2013-08-27 splitstackshape Functions to split concatenated data, conveniently stack columns of data.frames, and conveniently reshape data.frames
2013-08-27 VaRES Computes value at risk and expected shortfall for over 100 parametric distributions
2013-08-26 dbEmpLikeGOF Goodness-of-fit and two sample comparison tests using sample entropy
2013-08-26 epoc EPoC (Endogenous Perturbation analysis of Cancer)
2013-08-26 mi Missing Data Imputation and Model Checking
2013-08-26 rehh Searching for footprints of selection using Haplotype Homozygosity based tests
2013-08-26 rrcov Scalable Robust Estimators with High Breakdown Point
2013-08-26 SML Statistical Machine Learning
2013-08-25 trip Spatial analysis of animal track data
2013-08-24 soilprofile A package to consistently represent soil properties along a soil profile
2013-08-23 corTools Tools for processing data after a Genome Wide Association Study
2013-08-23 muRL Mailmerge using R, LaTeX, and the Web
2013-08-23 RcmdrPlugin.sampling Tools for sampling in Official Statistical Surveys
2013-08-23 rtematres The rtematres API package
2013-08-23 spaa SPecies Association Analysis
2013-08-23 tlemix Trimmed Maximum Likelihood Estimation
2013-08-22 fds Functional data sets
2013-08-22 GeoXp Interactive exploratory spatial data analysis
2013-08-22 HSROC Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test
2013-08-22 Rjpstatdb R interface of the Gateway to Advanced and User-friendly Statistics Service
2013-08-22 smss Datasets for Agresti and Finlay's "Statistical Methods for the Social Sciences"
2013-08-22 ssfit Fitting of parametric models using summary statistics
2013-08-22 StatDA Statistical Analysis for Environmental Data
2013-08-21 intamapInteractive procedures for automated interpolation - methods only to be used interactively, not included in intamap package
2013-08-21 kmlcov Clustering longitudinal data using the likelihood as a metric of distance
2013-08-21 RepeatedHighDim Global tests for expression data of high-dimensional sets of molecular features
2013-08-21 Rserve Binary R server
2013-08-21 SOLOMON Parentage analysis
2013-08-21 specificity Specificity of personality trait-outcome (or trait-trait) associations
2013-08-21 spls Sparse Partial Least Squares (SPLS) Regression and Classification
2013-08-20 CellularAutomaton One-Dimensional Cellular Automata
2013-08-20 censReg Censored Regression (Tobit) Models
2013-08-20 frontier Stochastic Frontier Analysis
2013-08-20 ggparallel Variations of Parallel Coordinate Plots for Categorical Data
2013-08-20 Newdistns Computes pdf, cdf, quantile and random numbers for 19 general families of distributions
2013-08-20 phenmod Auxiliary functions for phenological data processing, modelling and result handling
2013-08-20 Rdsm Threads Environment for R
2013-08-20 Rpoppler PDF tools based on Poppler
2013-08-20 SEchart SEchart
2013-08-20 WDI World Development Indicators (World Bank)
2013-08-19 BRugs R interface to the OpenBUGS MCMC software
2013-08-19 protiq Protein (identification and) quantification based on peptide evidence
2013-08-19 R2BayesX Estimate Structured Additive Regression Models with BayesX
2013-08-19 SeqGrapheR Simple GUI for graph based visualization of cluster of DNA sequence reads
2013-08-19 SynchWave Synchrosqueezed Wavelet Transform
2013-08-19 vwr Useful functions for visual word recognition research
2013-08-17 bitops Bitwise Operations
2013-08-17 condGEE Parameter estimation in conditional GEE for recurrent event gap times
2013-08-17 glinternet Learning interactions via hierarchical group-lasso regularization
2013-08-17 mda Mixture and flexible discriminant analysis
2013-08-17 mixsmsn Fitting finite mixture of scale mixture of skew-normal distributions
2013-08-17 profileModel Tools for profiling inference functions for various model classes
2013-08-16 adabag Applies multiclass AdaBoost.M1, AdaBoost-SAMME and Bagging
2013-08-16 blm Binomial linear and linear-expit regression
2013-08-16 CNVassocData Example data sets for association analysis of CNV data
2013-08-16 JOP Joint Optimization Plot
2013-08-16 PCS Calculate the probability of correct selection (PCS)
2013-08-16 relaxnet Relaxation of glmnet models (as in relaxed lasso, Meinshausen 2007)
2013-08-16 SEMID Identifiability of linear structural equation models
2013-08-15 bvpSolve Solvers for boundary value problems of ordinary differential equations
2013-08-15 conjoint Conjoint analysis package
2013-08-15 latticeExtra Extra Graphical Utilities Based on Lattice
2013-08-14 complex.surv.dat.sim Simulation of complex survival data
2013-08-14 covTest Computes covariance test for adaptive linear modelling
2013-08-14 IntLik Numerical Integration for Integrated Likelihood
2013-08-13 autopls pls regression with backward selection of predictors
2013-08-13 ddepn Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data
2013-08-13 denpro Visualization of multivariate, functions, sets, and data
2013-08-13 EasyHTMLReport EasyHTMLReport
2013-08-13 ES Edge Selection
2013-08-13 oposSOM Package for analysis and visualization of metagenes
2013-08-13 PAS Polygenic Analysis System (PAS)
2013-08-13 RFinanceYJ RFinanceYJ
2013-08-12 HotDeckImputation Hot Deck Imputation Methods for Missing Data
2013-08-12 Rarity Calculation of rarity indices for species and assemblages of species
2013-08-12 rLindo R Interface to LINDO API
2013-08-12 rminer Simpler use of data mining methods (e.g. NN and SVM) in classification and regression
2013-08-12 SpatioTemporal Spatio-Temporal Model Estimation
2013-08-10 bmp Read Windows Bitmap (BMP) images
2013-08-10 celestial Collection of common astronomical conversion routines
2013-08-10 PK Basic Non-Compartmental Pharmacokinetics
2013-08-10 pls Partial Least Squares and Principal Component regression
2013-08-10 readBrukerFlexData Reads mass spectrometry data in Bruker *flex format
2013-08-10 rzmq R binding for zmq (http://www.zeromq.org/)
2013-08-09 inline Inline C, C++, Fortran function calls from R
2013-08-09 mallet A wrapper around the Java machine learning tool MALLET
2013-08-09 NPMLEcmprsk Non-parametric Maximum-Likelihood Estimation for Competing-Risks Data
2013-08-09 optimx A Replacement and Extension of the optim() Function
2013-08-09 sidier SIDIER: Substitution and Indel Distances to Infer Evolutionary Relationships
2013-08-08 DMwR Functions and data for "Data Mining with R"
2013-08-08 gb Generalize Lambda Distribution and Generalized Bootstrapping
2013-08-08 gRim Graphical Interaction Models
2013-08-08 grofit The package was developed to fit fit many growth curves obtained under different conditions
2013-08-08 miRada MicroRNA Microarray Data Analysis
2013-08-08 moult Models for Analysing Moult in Birds
2013-08-08 SPMS Sub-Pathway Mining Software
2013-08-08 spt Sierpinski Pedal Triangle
2013-08-07 DiscreteWeibull Discrete Weibull distribution
2013-08-07 IASD Model selection for index of asymmetry distribution
2013-08-07 memuse Estimate the memory usage of dense, in-core, numeric objects
2013-08-06 dupiR Bayesian inference from count data using discrete uniform priors
2013-08-06 fanc Penalized likelihood factor analysis via nonconvex penalty
2013-08-05 coarseDataTools A collection of functions to help with analysis of coarsely observed data
2013-08-04 CompLognormal Functions for actuarial scientists
2013-08-04 DierckxSpline R companion to "Curve and Surface Fitting with Splines"
2013-08-04 lmeSplines Add smoothing spline modelling capability to nlme
2013-08-04 nlmeU Datasets and utility functions enhancing functionality of nlme package
2013-08-03 cape Combined analysis of pleiotropy and epistasis
2013-08-03 tipom Automated measure-based classification for flint tools
2013-08-03 visualize Graph Probability Distributions with User Supplied Parameters and Stats
2013-08-02 AMGET Post-processing tool for ADAPT 5
2013-08-02 dfcrm Dose-finding by the continual reassessment method
2013-08-02 ltsbase Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method
2013-08-02 RSclient Client for Rserve
2013-08-02 sme Smoothing-splines Mixed-effects Models
2013-08-02 timesboot Bootstrap computations for time series objects
2013-08-01 BNPdensity Ferguson-Klass type algorithm for posterior normalized random measures
2013-08-01 compactr Creates empty plots with compact axis notation
2013-08-01 nricens NRI for risk prediction models with time to event and binary response data
2013-08-01 rbmn Handling Linear Gaussian Bayesian Networks
2013-07-31 acopula Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas
2013-07-31 FNN Fast Nearest Neighbor Search Algorithms and Applications
2013-07-31 gPCA Batch Effect Detection via Guided Principal Components Analysis
2013-07-31 needy needy
2013-07-31 recluster Ordination methods for the analysis of beta-diversity indices
2013-07-31 SparseGrid Sparse grid integration in R
2013-07-30 COBRA Nonlinear Aggregation of Predictors
2013-07-30 epr Easy polynomial regression
2013-07-30 Lambda4 Collection of Internal Consistency Reliability Coefficients
2013-07-29 bibtex bibtex parser
2013-07-29 gcmr Gaussian Copula Marginal Regression
2013-07-29 pathdiagram Basic functions for drawing path diagrams
2013-07-29 robeth R functions for robust statistics
2013-07-29 SimultAnR Correspondence and Simultaneous Analysis
2013-07-29 widenet Penalized Regression with Polynomial Basis Expansions
2013-07-28 MPINet The package can implement the network-based metabolite pathway identification of pathways
2013-07-28 ppiPre Predict protein-protein interactions based on functional and topological similarities
2013-07-28 pwt Penn World Table (Versions 5.6, 6.x, 7.x)
2013-07-28 pwt8 Penn World Table (Version 8.0)
2013-07-28 Rz GUI Tool for Data Management like SPSS or Stata
2013-07-27 eigenprcomp Computes confidence intervals for principal components
2013-07-26 crawl Fit continuous-time correlated random walk models to animal movement data
2013-07-26 ebdbNet Empirical Bayes Estimation of Dynamic Bayesian Networks
2013-07-26 Myrrixjars External jars required for package Myrrix
2013-07-26 Nippon Japanese utility functions and data
2013-07-26 RInSp R Individual Specialization (RInSp) package
2013-07-25 AnDE An extended Bayesian Learning Technique developed by Dr. Geoff Webb
2013-07-25 gains Gains Table Package
2013-07-24 HapEstXXR Multi-locus stepwise regression (MSR)
2013-07-24 hint Tools for hypothesis testing based on Hypergeometric Intersection distributions
2013-07-24 jtrans Johnson transformation for normality
2013-07-24 RGCCA RGCCA and Sparse GCCA for multi-block data analysis
2013-07-24 RSAGA SAGA Geoprocessing and Terrain Analysis in R
2013-07-24 RxCEcolInf R x C Ecological Inference With Optional Incorporation of Survey Information
2013-07-24 speedglm Fitting Linear and Generalized Linear Models to large data sets
2013-07-24 tgram Functions to compute and plot tracheidograms
2013-07-23 ABCp2 Approximate Bayesian Computational model for estimating P2
2013-07-23 datamart Unified access to your data sources
2013-07-23 diptest Hartigan's dip test statistic for unimodality - corrected code
2013-07-23 directlabels Direct labels for multicolor plots in lattice or ggplot2
2013-07-23 fdatest Interval Testing Procedure for functional data
2013-07-23 neuroblastoma Neuroblastoma copy number profiles
2013-07-23 PatternClass Class-focused pattern metric comparisons using simulation
2013-07-23 usdm Uncertainty analysis for species distribution models
2013-07-22 anametrix Bidirectional connector to Anametrix API
2013-07-22 Exact Unconditional Exact Test
2013-07-22 somplot Visualisation of hexagonal Kohonen maps
2013-07-22 vars VAR Modelling
2013-07-22 wordmatch Matches words in one file with words in another file
2013-07-21 mondate Keep track of dates in terms of months
2013-07-21 suRtex LaTeX descriptive statistic reporting for survey data
2013-07-19 abf2 Load Axon ABF2 files (currently only in gap-free recording mode)
2013-07-19 BsMD Bayes Screening and Model Discrimination
2013-07-19 multisensi Multivariate Sensitivity Analysis
2013-07-18 bride Brier score decomposition of probabilistic forecasts for binary events
2013-07-18 Causata Analysis utilities for binary classification and Causata users
2013-07-18 DescribeDisplay R interface to DescribeDisplay (GGobi plugin)
2013-07-18 FactoClass Combination of Factorial Methods and Cluster Analysis
2013-07-18 rsem Robust Structural Equation Modeling with Missing Data and Auxiliary Variables
2013-07-17 maRketSim Market simulator for R
2013-07-16 entropy Estimation of Entropy, Mutual Information and Related Quantities
2013-07-16 LogrankA Logrank Test for Aggregated Survival Data
2013-07-16 QSARdata Quantitative Structure Activity Relationship (QSAR) Data Sets
2013-07-15 fuzzyRankTests Fuzzy Rank Tests and Confidence Intervals
2013-07-15 mapplots Data visualisation on maps
2013-07-15 rexpokit R wrappers for EXPOKIT; other matrix functions
2013-07-15 straweib Stratified Weibull Regression Model
2013-07-14 gpk 100 Data Sets for Statistics Education
2013-07-14 oblique.tree Oblique Trees for Classification Data
2013-07-13 kza Kolmogorov-Zurbenko Adaptive Filters
2013-07-13 phyloclim Integrating Phylogenetics and Climatic Niche Modeling
2013-07-12 desire Desirability functions in R
2013-07-12 icaOcularCorrection Independent Components Analysis (ICA) based artifact correction
2013-07-12 LS2W Locally stationary two-dimensional wavelet process estimation scheme
2013-07-12 PROFANCY The package can prioritize candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways
2013-07-11 DistatisR DiSTATIS Three Way Metric Multidimensional Scaling
2013-07-11 munsell Munsell colour system
2013-07-11 optBiomarker Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules
2013-07-11 sig Print function signatures
2013-07-11 splus2R Supplemental S-PLUS functionality in R
2013-07-11 switchnpreg Switching nonparametric regression models for a single curve and functional data
2013-07-10 LoopAnalyst A collection of tools to conduct Levins' Loop Analysis
2013-07-10 MDM Multinomial Diversity Model
2013-07-10 multicool Permutations of multisets in cool-lex order
2013-07-10 tripEstimation Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes
2013-07-09 backtest Exploring portfolio-based conjectures about financial instruments
2013-07-09 EnvNicheR Environmental niche
2013-07-09 ipfp Fast implementation of the iterative proportional fitting procedure in C
2013-07-09 portfolio Analysing equity portfolios
2013-07-09 portfolioSim Framework for simulating equity portfolio strategies
2013-07-09 subselect Selecting variable subsets
2013-07-09 twitteR R based Twitter client
2013-07-09 VDA VDA
2013-07-08 coxphf Cox regression with Firth's penalized likelihood
2013-07-08 fast Implementation of the Fourier Amplitude Sensitivity Test (FAST)
2013-07-08 Laterality Functions to calculate common laterality statistics in primatology
2013-07-06 sGPCA Sparse Generalized Principal Component Analysis
2013-07-06 smoothie Two-dimensional Field Smoothing
2013-07-05 bgeva Binary Generalized Extreme Value Additive Models
2013-07-05 clusthaplo Clustering of haplotypes
2013-07-05 EDR Estimation of the effective dimension reduction (EDR) space
2013-07-05 MADAM This package provides some basic methods for meta-analysis
2013-07-04 ExactCIdiff Inductive Confidence Intervals for the difference between two proportions
2013-07-04 HPO.db A set of annotation maps describing the Human Phenotype Ontology
2013-07-04 LDcorSV Linkage disequilibrium corrected by the structure and the relatedness
2013-07-03 abundant Abundant regression and high-dimensional principal fitted components
2013-07-03 editrules R package for parsing, applying, and manipulating data cleaning rules
2013-07-03 gamlss.util GAMLSS Utilities
2013-07-03 gsalib Utility functions for GATK
2013-07-03 QZ Generalized Eigenvalues and QZ Decomposition
2013-07-03 readMzXmlData Reads mass spectrometry data in mzXML format
2013-07-03 SNPtools Accessing, subsetting and plotting mouse SNPs
2013-07-03 splm Econometric Models for Spatial Panel Data
2013-07-02 clusterGenomics Identifying clusters in genomics data by recursive partitioning
2013-07-02 deducorrect deducorrect: Deductive correction, deductive imputation, and deterministic correction
2013-07-02 deTestSet Testset for differential equations
2013-07-02 flexclust Flexible Cluster Algorithms
2013-07-02 limSolve Solving Linear Inverse Models
2013-07-02 retimes Reaction Time Analysis
2013-07-01 DTK Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
2013-07-01 pathClass Classification using biological pathways as prior knowledge
2013-06-30 AlleleRetain Allele Retention, Inbreeding, and Demography
2013-06-29 sjdbc JDBC Driver Interface
2013-06-29 tibbrConnector R interface to tibbr
2013-06-28 agrmt Calculate agreement
2013-06-28 CaDENCE Conditional Density Estimation Network Construction and Evaluation
2013-06-28 FField Force field simulation for a set of points
2013-06-28 FisherEM The Fisher-EM algorithm
2013-06-28 loglognorm Double log normal distribution functions
2013-06-28 MatchIt MatchIt: Nonparametric Preprocessing for Parametric Casual Inference
2013-06-28 r2dRue 2d Rain Use Efficience model
2013-06-28 rgenoud R version of GENetic Optimization Using Derivatives
2013-06-27 b6e6rl Adaptive differential evolution, b6e6rl variant
2013-06-27 itree Tools for classification and regression trees, with an emphasis on interpretability
2013-06-27 MAMSE Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights
2013-06-27 ParDNAcopy parallel implementation of the "segment" function of package "DNAcopy"
2013-06-27 PCICt Implementation of POSIXct work-alike for 365 and 360 day calendars
2013-06-26 CoxRidge Cox models with dynamic ridge penalties
2013-06-26 distillery Method Functions for Confidence Intervals and to Distill Information from an Object
2013-06-26 JudgeIt JudgeIt: A Program for Evaluating Electoral Systems and Redistricting Plans
2013-06-26 logistf Firth's bias reduced logistic regression
2013-06-26 rv Simulation-based random variable objects
2013-06-26 SPOT Sequential Parameter Optimization
2013-06-25 LICurvature Sensitivity Analysis for Case Weight in Normal Linear Regression
2013-06-24 fArma ARMA Time Series Modelling
2013-06-24 fAsianOptions EBM and Asian Option Valuation
2013-06-24 fNonlinear Nonlinear and Chaotic Time Series Modelling
2013-06-24 fOptions Basics of Option Valuation
2013-06-24 fUnitRoots Trends and Unit Roots
2013-06-24 tsModel Time Series Modeling for Air Pollution and Health
2013-06-23 crrSC Competing risks regression for Stratified and Clustered data
2013-06-21 ArrayBin Binarization of numeric data arrays
2013-06-21 cfa Analysis of configuration frequencies (CFA)
2013-06-20 CNprep pre-process DNA copy number (CN) data for detection of CN events
2013-06-20 RobustAFT Truncated Maximum Likelihood fit and Robust Accelerated Failure Time regression for Gaussian and log-Weibull case
2013-06-20 XML Tools for parsing and generating XML within R and S-Plus
2013-06-19 FRAPO Financial Risk Modelling and Portfolio Optimisation with R
2013-06-19 gwrr Fits geographically weighted regression models with diagnostic tools
2013-06-19 Mcomp Data from the M-competitions
2013-06-19 MConjoint Conjoint Analysis through Averaging of Multiple Analyses
2013-06-19 MethComp Functions for analysis of agreement in method comparison studies
2013-06-19 RSiena Siena - Simulation Investigation for Empirical Network Analysis
2013-06-19 SmithWilsonYieldCurve Smith-Wilson Yield Curve Construction
2013-06-18 aods3 Analysis of Overdispersed Data using S3 methods
2013-06-18 glmlep Fit GLM with LEP-based penalized maximum likelihood
2013-06-18 gsarima Two functions for Generalized SARIMA time series simulation
2013-06-18 restlos Robust estimation of location and scatter
2013-06-18 rsgcc Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data
2013-06-18 ZeBook ZeBook Working with dynamic models for agriculture and environment
2013-06-17 Bolstad Bolstad functions
2013-06-17 Bolstad2 Bolstad functions
2013-06-17 MCPerm A Monte Carlo permutation method for multiple test correlation
2013-06-17 twiddler Interactive manipulation of R expressions
2013-06-16 CompQuadForm Distribution function of quadratic forms in normal variables
2013-06-16 JointRegBC Joint Modelling of Mixed Correlated Binary and Continuous Responses : A Latent Variable Approach
2013-06-16 nsga2R Elitist Non-dominated Sorting Genetic Algorithm based on R
2013-06-15 MExPosition Multi-table ExPosition
2013-06-14 doMPI Foreach parallel adaptor for the Rmpi package
2013-06-14 miscF Miscellaneous Functions
2013-06-14 ordPens Selection and/or Smoothing of Ordinal Predictors
2013-06-13 depthTools Depth Tools Package
2013-06-13 govStatJPN functions to get public survey data in Japan
2013-06-13 PDSCE Positive definite sparse covariance estimators
2013-06-13 RcmdrPlugin.depthTools R commander Depth Tools Plug-In
2013-06-12 candisc Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
2013-06-12 cobs99 Constrained B-splines – outdated 1999 version
2013-06-12 ReacTran Reactive transport modelling in 1D, 2D and 3D
2013-06-12 smoothSurv Survival Regression with Smoothed Error Distribution
2013-06-12 SoDA Functions and Examples for "Software for Data Analysis"
2013-06-12 stabledist Stable Distribution Functions
2013-06-11 ISLR Data for An Introduction to Statistical Learning with Applications in R
2013-06-11 MRCE Multivariate regression with covariance estimation
2013-06-11 SIMMS Subnetwork Integration for Multi-Modal Signatures
2013-06-11 tbdiag Functions for tuberculosis diagnostics research
2013-06-11 TwoStepCLogit Conditional logistic regression: A two-step estimation method
2013-06-10 cabootcrs Bootstrap Confidence Regions for Correspondence Analysis
2013-06-10 covLCA Latent Class Models with Covariate Effects on Underlying and Measured Variables
2013-06-10 sparktex Generate LaTeX sparklines in R
2013-06-09 MNP R Package for Fitting the Multinomial Probit Model
2013-06-08 Amelia Amelia II: A Program for Missing Data
2013-06-08 lshorth The Length of the Shorth
2013-06-08 pbs Periodic B Splines
2013-06-07 GWAF Genome-wide association/interaction analysis and rare variant analysis with family data
2013-06-06 IUPS Incorporating Uncertainties in Propensity Scores
2013-06-06 LVMMCOR A Latent Variable Model for Mixed Continuous and Ordinal Responses
2013-06-06 urca Unit root and cointegration tests for time series data
2013-06-05 batch Batching Routines in Parallel and Passing Command-Line Arguments to R
2013-06-05 GSE Robust Estimation of Multivariate Location and Scatter in the Presence of Missing Data
2013-06-04 FGalgorithm Flury and Gautschi algorithms
2013-06-04 mopsocd MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance
2013-06-04 NPMVCP Nonparametric Multivariate Change Point Model
2013-06-04 PrivateLR Differentially private regularized logistic regression
2013-06-04 RfmriVC Varying stimulus coefficient fMRI models in R
2013-06-04 RSADBE Data related to the book "R Statistical Application Development by Example"
2013-06-04 SCEPtER Stellar CharactEristics Pisa Estimation gRid
2013-06-04 SCEPtERextras Additional grids for SCEPtER
2013-06-04 skatMeta Efficient meta analysis for the SKAT test
2013-06-03 ahaz Regularization for semiparametric additive hazards regression
2013-06-03 l2boost l2boost - Friedman's boosting algorithm for regularized linear regression
2013-06-03 nlts (non)linear time series analysis
2013-06-03 RobustRankAggreg Methods for robust rank aggregation
2013-06-03 TrialSize R functions in Chapter 3,4,6,7,9,10,11,12,14,15
2013-05-31 KoNLP Korean NLP Package
2013-05-31 protoclass Interpretable classification with prototypes
2013-05-31 Simile Interact with Simile models
2013-05-30 metamisc Diagnostic and prognostic meta analysis (metamisc)
2013-05-29 branchLars Cost-efficient Variable Selection
2013-05-29 OneTwoSamples Deal with one and two (normal) samples
2013-05-28 CoinMinD Simultaneous Confidence Interval for Multinomial Proportion
2013-05-28 DTMCPack Suite of functions related to discrete-time discrete-state Markov Chains
2013-05-28 fitTetra fitTetra is an R package for assigning tetraploid genotype scores
2013-05-28 RVtests Rare Variant Tests
2013-05-27 compareODM comparison of medical forms in CDISC ODM format
2013-05-27 eba Elimination-by-Aspects (EBA) Models
2013-05-27 SesIndexCreatoR Computation and visualization of socioeconomic indices and categories distributions
2013-05-27 Tides Tides
2013-05-27 timeROC Time-dependent ROC curve and AUC for censored survival data
2013-05-26 ggROC package for roc curve plot with ggplot2
2013-05-26 McSpatial Nonparametric spatial data analysis
2013-05-26 RSQLite SQLite interface for R
2013-05-25 profdpm Profile Dirichlet Process Mixtures
2013-05-25 SphericalCubature Numerical integration over spheres and balls in n-dimensions; multivariate polar coordinates
2013-05-24 BSquare Bayesian Simultaneous Quantile Regression
2013-05-24 lbiassurv Length-biased correction to survival curve estimation
2013-05-24 tlnise Two-level normal independent sampling estimation
2013-05-23 Haplin Analyzing case-parent triad and/or case-control data with SNP haplotypes
2013-05-23 InferenceSMR Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival
2013-05-23 SODC Optimal Discriminant Clustering(ODC) and Sparse Optimal Discriminant Clustering(SODC)
2013-05-22 cyphid Cycle and Phase Identification for mastication data
2013-05-22 parallelize.dynamic Automate parallelization of function calls by means of dynamic code analysis
2013-05-22 trueskill Implementation the TrueSkill algorithm in R
2013-05-21 fastICA FastICA Algorithms to perform ICA and Projection Pursuit
2013-05-21 rPlant R interface to the iPlant Discovery Environment
2013-05-21 SetMethods SetMethods: A Package Companion to "Set-Theoretic Methods for the Social Sciences"
2013-05-20 Comp2ROC Compare two ROC curves that intersect
2013-05-20 pom POM - Patch Occupancy Models
2013-05-19 pnmtrem Probit-Normal Marginalized Transition Random Effects Models
2013-05-19 probsvm probsvm: Class probability estimation for Support Vector Machines
2013-05-18 CfEstimateQuantiles Estimate quantiles using any order Cornish-Fisher expansion
2013-05-18 SMFI5 R functions and data from Chapter 5 of 'Statistical Methods for Financial Engineering'
2013-05-17 CDLasso Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression
2013-05-16 biglm bounded memory linear and generalized linear models
2013-05-16 chillR Statistical methods for phenology analysis in temperate fruit trees
2013-05-16 grnn General regression neural network
2013-05-16 MDSGUI A GUI for interactive MDS in R
2013-05-16 PurBayes Bayesian Estimation of Tumor Purity and Clonality
2013-05-16 ROCR Visualizing the performance of scoring classifiers
2013-05-15 ABCExtremes ABC Extremes
2013-05-15 corpcor Efficient Estimation of Covariance and (Partial) Correlation
2013-05-15 Nozzle.R1 Nozzle Reports
2013-05-15 RDSTK An R wrapper for the Data Science Toolkit API
2013-05-14 dsample Discretization-based Direct Random Sample Generation
2013-05-14 SLHD Maximin-Distance (Sliced) Latin Hypercube Designs
2013-05-14 sos4R An R client for the OGC Sensor Observation Service
2013-05-14 Tinflex Tinflex - Universal non-uniform random number generator
2013-05-13 csSAM csSAM - cell-specific Significance Analysis of Microarrays
2013-05-13 hgam High-dimensional Additive Modelling
2013-05-13 OpenMPController Control number of OpenMP threads dynamically
2013-05-13 tseries Time series analysis and computational finance
2013-05-12 coefplot Plots Coefficients from Fitted Models
2013-05-11 ergmharris Local Health Department network data set
2013-05-10 ArDec Time series autoregressive-based decomposition
2013-05-10 copBasic Basic Theoretical Copula, Empirical Copula, and Various Utility Functions
2013-05-10 covRobust Robust Covariance Estimation via Nearest Neighbor Cleaning
2013-05-10 CoxBoost Cox models by likelihood based boosting for a single survival endpoint or competing risks
2013-05-10 GAMBoost Generalized linear and additive models by likelihood based boosting
2013-05-10 gbm Generalized Boosted Regression Models
2013-05-10 multilevelPSA Multilevel Propensity Score Analysis
2013-05-10 RcppProgress An interruptible progress bar with OpenMP support for c++ in R packages
2013-05-09 gputools A few GPU enabled functions
2013-05-09 HMP Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
2013-05-09 NHEMOtree Non-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification
2013-05-09 timeline Timelines for a Grammar of Graphics
2013-05-09 wpp2010 World Population Prospects 2010
2013-05-08 eventstudies Event study and extreme event analysis
2013-05-08 intergraph Coercion routines for network data objects in R
2013-05-08 lisrelToR Import output from LISREL into R
2013-05-08 rapport A report templating system
2013-05-07 CircNNTSR CircNNTSR: An R package for the statistical analysis of circular data using nonnegative trigonometric sums (NNTS) models
2013-05-07 corrsieve CorrSieve
2013-05-07 cshapes CShapes Dataset and Utilities
2013-05-07 ExpDes Experimental Designs package
2013-05-07 ExpDes.pt Pacote Experimental Designs (Portuguese)
2013-05-07 InteractiveIGraph interactive network analysis and visualization
2013-05-07 PIN Estimates the parameters of a trading-tree model for the computation of the probability of informed trading
2013-05-07 pnn Probabilistic neural networks
2013-05-06 bdoc Bayesian Discrete Ordered Classification of DNA Barcodes
2013-05-06 CCAGFA Bayesian canonical correlation analysis and group factor analysis
2013-05-06 CONOR CONOR
2013-05-06 GibbsACOV Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
2013-05-06 simex SIMEX- and MCSIMEX-Algorithm for measurement error models
2013-05-04 gsbDesign Group Sequential Bayes Design
2013-05-04 HydroMe R codes for estimating water retention and infiltration model parameters using experimental data
2013-05-03 acepack ace() and avas() for selecting regression transformations
2013-05-03 bnpmr Bayesian monotonic nonparametric regression
2013-05-03 diffdepprop Calculates Confidence Intervals for two Dependent Proportions
2013-05-03 dma Dynamic model averaging
2013-05-03 iteRates Parametric rate comparison
2013-05-03 mixsep Forensic Genetics DNA Mixture Separation
2013-05-03 semTools Useful tools for structural equation modeling
2013-05-02 RAP Reversal Association Pattern
2013-05-02 SDBP Calculate the third-order accurate Unbiased P-values via Speedy double bootstrap method
2013-05-02 SNPMClust A bivariate Gaussian genotype clustering and calling algorithm for Illumina microarrays
2013-05-02 spcosa Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata
2013-05-02 vardiag A package for variogram diagnostics
2013-05-01 CountsEPPM Mean and variance modeling of count data
2013-05-01 downloader A package for downloading files over http and https
2013-05-01 fBasics Rmetrics - Markets and Basic Statistics
2013-05-01 fGarch Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
2013-05-01 MCMCpack Markov chain Monte Carlo (MCMC) Package
2013-05-01 networksis Simulate bipartite graphs with fixed marginals through sequential importance sampling
2013-05-01 RnavGraph Using graphs as a navigational infrastructure
2013-05-01 RnavGraphImageData Some image data used in the RnavGraph package demos
2013-05-01 timeDate Rmetrics - Chronological and Calendar Objects
2013-05-01 timeSeries Rmetrics - Financial Time Series Objects
2013-04-30 MAMA Meta-Analysis of MicroArray
2013-04-30 PhViD PhViD: an R package for PharmacoVigilance signal Detection
2013-04-29 tseriesChaos Analysis of nonlinear time series
2013-04-28 whisker {{mustache}} for R, logicless templating
2013-04-27 MicroStrategyR MicroStrategyR Package
2013-04-26 FuzzyToolkitUoN Type 1 Fuzzy Logic Toolkit
2013-04-26 ROAuth R interface for OAuth
2013-04-25 coefficientalpha Robust Cronbach's alpha with missing and non-normal data
2013-04-25 dbEmpLikeNorm Test for joint assessment of normality
2013-04-25 hsmm Hidden Semi Markov Models
2013-04-25 princurve Fits a Principal Curve in Arbitrary Dimension
2013-04-25 sendplot Tool for sending interactive plots with tool-tip content
2013-04-25 SpherWave Spherical Wavelets and SW-based Spatially Adaptive Methods
2013-04-24 DetSel A computer program to detect markers responding to selection
2013-04-24 dirmult Estimation in Dirichlet-Multinomial distribution
2013-04-24 lars Least Angle Regression, Lasso and Forward Stagewise
2013-04-24 logspline Logspline density estimation routines
2013-04-23 GENEAread Package For Reading Binary files
2013-04-23 R2G2 Converting R CRAN outputs into Google Earth
2013-04-23 siar Stable Isotope Analysis in R
2013-04-23 superbiclust Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering)
2013-04-22 FFD Freedom From Disease
2013-04-22 TESS Fast simulation of reconstructed phylogenetic trees under time-dependent birth-death processes
2013-04-21 causalsens Selection Bias Approach to Sensitivity Analysis for Causal Effects
2013-04-21 mgraph Graphing map attributes and non-map variables in R
2013-04-20 cdb Reading and Writing Constant DataBases
2013-04-20 DEoptim Global optimization by Differential Evolution
2013-04-20 ibdreg Regression Methods for IBD Linkage With Covariates
2013-04-20 locfit Local Regression, Likelihood and Density Estimation
2013-04-19 boussinesq Analytic Solutions for (ground-water) Boussinesq Equation
2013-04-19 FrF2.catlg128 Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words
2013-04-19 PairedData Paired Data Analysis
2013-04-19 repolr Repeated measures proportional odds logistic regression
2013-04-19 spatialCovariance Computation of spatial covariance matrices for data on rectangles
2013-04-18 glmdm R Code for Simulation of GLMDM
2013-04-18 Iso Functions to perform isotonic regression
2013-04-18 madsim A Flexible Microarray Data Simulation Model
2013-04-18 palaeoSig Significance tests for palaeoenvironmental reconstructions
2013-04-18 review Manage Review Logs
2013-04-18 spikeslab Prediction and variable selection using spike and slab regression
2013-04-18 threg Threshold Regression
2013-04-17 catspec Special models for categorical variables
2013-04-17 CheckDigit Calculate and verify check digits
2013-04-17 decon Deconvolution Estimation in Measurement Error Models
2013-04-17 DnE DnE(Distribution and Equation)
2013-04-17 GAIPE Graphical Extension with Accuracy in Parameter Estimation (GAIPE)
2013-04-17 lpridge Local Polynomial (Ridge) Regression
2013-04-17 mvbutils Workspace organization, code and documentation editing, package prep and editing, etc
2013-04-17 nbpMatching functions for non-bipartite optimal matching
2013-04-17 quadprog Functions to solve Quadratic Programming Problems
2013-04-17 rmp Rounded Mixture Package. Performs probability mass function estimation with Dirichlet process mixtures of rounded kernels
2013-04-17 TBSSurvival TBS Model R package
2013-04-16 appell Compute Appell's F1 hypergeometric function
2013-04-16 FRB Fast and Robust Bootstrap
2013-04-16 FWDselect Selecting variables in regression models
2013-04-16 JGL Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes
2013-04-16 pspline Penalized Smoothing Splines
2013-04-16 qtlbim QTL Bayesian Interval Mapping
2013-04-16 spacejam Sparse conditional graph estimation with joint additive models
2013-04-15 peplib Peptide Library Analysis Methods
2013-04-15 R2Cuba Multidimensional Numerical Integration
2013-04-14 clinsig Clinical significance functions
2013-04-13 DeducerSpatial Deducer for spatial data analysis
2013-04-13 ellipse Functions for drawing ellipses and ellipse-like confidence regions
2013-04-13 FBFsearch Algorithm for searching the space of Gaussian directed acyclic graphical models through moment fractional Bayes factors
2013-04-13 ggmap A package for spatial visualization with Google Maps and OpenStreetMap
2013-04-13 OpenStreetMap Access to open street map raster images
2013-04-12 glmulti Model selection and multimodel inference made easy
2013-04-12 logging R logging package
2013-04-12 orderbook Orderbook visualization/Charting software
2013-04-12 sideChannelAttack Side Channel Attack
2013-04-12 WARN Weaning Age Reconstruction with Nitrogen isotope analysis
2013-04-10 clinUtiDNA Clinical Utility of DNA Testing
2013-04-10 deseasonalize Optimal deseasonalization for geophysical time series using AR fitting
2013-04-10 hierfstat Estimation and tests of hierarchical F-statistics
2013-04-10 multilevel Multilevel Functions
2013-04-10 R2OpenBUGS Running OpenBUGS from R
2013-04-09 DAMisc Dave Armstrong's Miscellaneous Functions
2013-04-09 highfrequency highfrequency
2013-04-09 phcfM Modelling anthropogenic deforestation
2013-04-09 R1magic Compressive Sampling: Sparse signal recovery utilities
2013-04-09 randomSurvivalForest Random Survival Forests
2013-04-09 rbugs Fusing R and OpenBugs and Beyond
2013-04-09 WebDevelopR Website development package for R
2013-04-08 df2json Convert a dataframe to JSON
2013-04-08 LVQTools Learning Vector Quantization Tools
2013-04-08 peperr Parallelised Estimation of Prediction Error
2013-04-08 survIDINRI IDI and NRI for comparing competing risk prediction models with censored survival data
2013-04-07 bc3net BC3NET
2013-04-07 difR Collection of methods to detect dichotomous differential item functioning (DIF) in psychometrics
2013-04-07 popgen Statistical and Population Genetics
2013-04-07 R2WinBUGS Running WinBUGS and OpenBUGS from R / S-PLUS
2013-04-07 SportsAnalytics Infrastructure for Sports Analytics
2013-04-05 concreg Concordance regression
2013-04-05 DiceOptim Kriging-based optimization for computer experiments
2013-04-05 persiandictionary English to Persian dictionary
2013-04-05 PlotRegionHighlighter Creates an envelope that surrounds a set of points plotted in a two dimensional space
2013-04-05 psbcGroup Penalized semi-parametric Bayesian Cox (PSBC) models with shrinkage and grouping priors
2013-04-04 BaySIC Bayesian Analysis of Significantly Mutated Genes in Cancer
2013-04-04 GeoLight Analysis of light based geolocator data
2013-04-04 inflection Finds the inflection point of a curve
2013-04-04 relsurv Relative survival
2013-04-04 sae Small Area Estimation
2013-04-04 tgp Bayesian treed Gaussian process models
2013-04-03 lint Tools to check R code style
2013-04-03 magma Matrix Algebra on GPU and Multicore Architectures
2013-04-03 ncbit retrieve and build NBCI taxonomic data
2013-04-03 noweb Noweb system for R
2013-04-03 relevent Relational Event Models
2013-04-03 softclassval Soft classification performance measures
2013-04-03 softImpute matrix completion via iterative soft-thresholded svd
2013-04-03 TimeWarp Date calculations and manipulation
2013-04-03 trioGxE A data smoothing approach to explore and test gene-environment interaction in case-parent trio data
2013-04-02 ConvCalendar Converts dates between calendars
2013-04-02 ENmisc Neuwirth miscellaneous
2013-04-02 infutil Information Utility
2013-04-02 MLEcens Computation of the MLE for bivariate (interval) censored data
2013-04-02 normalp Package for exponential power distributions (EPD)
2013-04-02 SGL Fit a GLM (or cox model) with a combination of lasso and group lasso regularization
2013-04-02 SPIn Simulation-efficient Shortest Probability Intervals
2013-04-01 biganalytics A library of utilities for big.matrix objects of package bigmemory
2013-04-01 gpclib General Polygon Clipping Library for R
2013-04-01 optAUC Optimal Combinations of Diagnostic Tests Based on AUC
2013-03-31 nice Get or Set UNIX Niceness
2013-03-30 pbatR P2BAT
2013-03-30 thgenetics Genetic Rare Variants Tests
2013-03-30 TSHRC Two Stage Hazard Rate Comparison
2013-03-29 experiment experiment: R package for designing and analyzing randomized experiments
2013-03-29 FuncMap Hive Plots of R Package Function Calls
2013-03-29 pooh Partial Orders and Relations
2013-03-29 Ritc Isothermal Titration Calorimetry (ITC) Data Analysis
2013-03-28 ICE Iterated Conditional Expectation
2013-03-28 robustX eXperimental Functionality for Robust Statistics
2013-03-28 sprsmdl Sparse modeling toolkit
2013-03-27 farsi Translate integers into persian
2013-03-27 meteogRam Tools for plotting meteograms
2013-03-27 RPostgreSQL R interface to the PostgreSQL database system
2013-03-27 severity Mayo's Post-data Severity Evaluation
2013-03-26 A3 A3: Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
2013-03-26 Bayesthresh Bayesian thresholds mixed-effects models for categorical data
2013-03-26 exsic Convenience functions for botanist to create exsiccatae indices
2013-03-26 HI Simulation from distributions supported by nested hyperplanes
2013-03-26 spatialkernel Nonparameteric estimation of spatial segregation in a multivariate point process
2013-03-25 gaoptim Genetic Algorithm optimization for real-based and permutation-based problems
2013-03-25 HAP.ROR Recursive Organizer (ROR)
2013-03-25 hashFunction A collection of non-cryptographic hash functions
2013-03-25 phonR R tools for phoneticians and phonologists
2013-03-25 PMA Penalized Multivariate Analysis
2013-03-23 crimCV Group-Based Modelling of Longitudinal Data
2013-03-23 flsa Path algorithm for the general Fused Lasso Signal Approximator
2013-03-23 hcc Hidden correlation check
2013-03-23 SemiPar Semiparametic Regression
2013-03-22 FluOMatic Estimation of background-subtracted fluorescence data
2013-03-22 margie Log Marginal Likelihood of Gaussian Mixture
2013-03-22 orientlib Support for orientation data
2013-03-21 mco Multi criteria optimization algorithms and related functions
2013-03-21 MSeasyTkGUI MSeasy Tcl/Tk Graphical User Interface
2013-03-21 pca3d Three dimensional PCA plots
2013-03-21 RNCEP Obtain, organize, and visualize NCEP weather data
2013-03-20 cec2005benchmark Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization
2013-03-20 DATforDCEMRI Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
2013-03-20 MSeasy Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data
2013-03-20 rCarto This package builds maps with a full cartographic layout
2013-03-19 AnalyzeFMRI Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format
2013-03-19 BiplotGUI Interactive Biplots in R
2013-03-19 DeducerExtras Additional dialogs and functions for Deducer
2013-03-19 QCAGUI QCA Graphical User Interface
2013-03-19 sets Sets, Generalized Sets, Customizable Sets and Intervals
2013-03-19 tpe Tree preserving embedding
2013-03-18 crossdes Construction of Crossover Designs
2013-03-18 cvplogistic Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm
2013-03-18 marqLevAlg An algorithm for least-squares curve fitting
2013-03-18 MixtureInf Inference for Finite Mixture Models
2013-03-18 rgr The GSC Applied Geochemistry EDA Package
2013-03-18 SmarterPoland A set of tools developed by the Foundation SmarterPoland.pl
2013-03-17 ensembleMOS Ensemble Model Output Statistics
2013-03-17 simsem SIMulated Structural Equation Modeling
2013-03-17 TTR Technical Trading Rules
2013-03-16 FitAR Subset AR Model Fitting
2013-03-15 brnn brnn (Bayesian regularization for feed-forward neural networks)
2013-03-15 fImport Rmetrics - Economic and Financial Data Import
2013-03-15 nordklimdata1 Dataset for climate analysis with data from the Nordic region
2013-03-14 BlockMessage Creates strings that show a text message in 8 by 8 block letters
2013-03-14 CUMP Analyze Multivariate Phenotypes by Combining Univariate results
2013-03-14 EVER Estimation of Variance by Efficient Replication
2013-03-14 fpp Data for "Forecasting: principles and practice"
2013-03-14 GriegSmith Uses Grieg-Smith method on 2 dimentional spatial data
2013-03-14 hsicCCA Canonical Correlation Analysis based on Kernel Independence Measures
2013-03-13 bams Breakpoint annotation model smoothing
2013-03-13 BayHap Bayesian analysis of haplotype association using Markov Chain Monte Carlo
2013-03-13 dixon Nearest Neighbour Contingency Table Analysis
2013-03-13 ecespa Functions for spatial point pattern analysis
2013-03-13 miscTools Miscellaneous Tools and Utilities
2013-03-13 mpmcorrelogram Multivariate Partial Mantel Correlogram
2013-03-13 perry Resampling-based prediction error estimation for regression models
2013-03-13 swamp Visualization, analysis and adjustment of high-dimensional data in respect to sample annotations
2013-03-13 zoeppritz Zoeppritz Equations
2013-03-12 ber Batch Effects Removal
2013-03-12 kappaSize Sample Size Estimation Functions for Studies of Interobserver Agreement
2013-03-12 penDvine Flexible Pair-Copula Estimation in D-vines using Bivariate Penalized Splines
2013-03-12 qtlmt Tools for mapping multiple complex traits
2013-03-12 reports An R package to assist in the workflow of writing academic articles and other reports
2013-03-11 cosso Fit Regularized Nonparametric Regression Models Using COSSO Penalty
2013-03-11 FuzzyStatProb Fuzzy stationary probabilities from a sequence of observations of an unknown Markov chain
2013-03-11 patchPlot Scatterplots of image patches
2013-03-11 semisupKernelPCA Kernel PCA projection, and semi-supervised variant
2013-03-10 biclust BiCluster Algorithms
2013-03-10 Sleuth3 Data sets from Ramsey and Schafer's "Statistical Sleuth (3rd ed)"
2013-03-10 VisuClust VisuClust
2013-03-08 BBMM Brownian bridge movement model
2013-03-08 EpiEstim EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves
2013-03-08 nls2 Non-linear regression with brute force
2013-03-08 rawFasta Memory efficient handling of FASTA sequence files, a pure R implementation
2013-03-07 abn Data Modelling with Additive Bayesian Networks
2013-03-07 dse Dynamic Systems Estimation (time series package)
2013-03-07 emdbook Ecological models and data (book support)
2013-03-07 GESTr Gene Expression State Transformation
2013-03-07 LDOD Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models
2013-03-06 IM Orthogonal Moment Analysis
2013-03-05 cec2013 Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013
2013-03-04 bifactorial Inferences for bi- and trifactorial trial designs
2013-03-04 MAR1 Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data
2013-03-04 nets Network Estimation for Time Series
2013-03-04 SpatialExtremes Modelling Spatial Extremes
2013-03-04 StandardizeText Standardize Text
2013-03-04 survexp.fr Relative survival, AER and SMR based on French death rates
2013-03-03 ringbuffer Ring buffer (circular buffer) data structure
2013-03-03 YplantQMC Plant architectural analysis with Yplant and QuasiMC
2013-03-01 AtmRay Acoustic Traveltime Calculations for 1-D Atmospheric Models
2013-03-01 glmperm Inference in Generalized Linear Models
2013-03-01 perARMA Package for Periodic Time Series Analysis
2013-03-01 rCMA CMA-ES R-to-Java interface
2013-03-01 sgeostat An Object-oriented Framework for Geostatistical Modeling in S+
2013-03-01 VecStatGraphs3D Vector analysis using graphical and analytical methods in 3D
2013-02-28 FSelector Selecting attributes
2013-02-28 heatex Heat exchange calculations during physical activity
2013-02-28 het.test White's Test for Heteroskedasticity
2013-02-28 MOJOV Mojo Variants: Rare Variants analysis
2013-02-28 norm Analysis of multivariate normal datasets with missing values
2013-02-27 HDMD Statistical Analysis Tools for High Dimension Molecular Data (HDMD)
2013-02-27 Rcgmin Conjugate gradient minimization of nonlinear functions with box constraints
2013-02-26 estout Estimates Output
2013-02-26 fso Fuzzy Set Ordination
2013-02-26 orclus ORCLUS subspace clustering
2013-02-26 SkewHyperbolic The Skew Hyperbolic Student t-Distribution
2013-02-25 cubature Adaptive multivariate integration over hypercubes
2013-02-25 EBMAforecast Ensemble BMA Forecasting
2013-02-25 intcox Iterated Convex Minorant Algorithm for interval censored event data
2013-02-25 iWeigReg Improved methods for causal inference and missing data problems
2013-02-25 queueing Analysis of Queueing Networks and Models
2013-02-25 ror Robust Ordinal Regression MCDA library
2013-02-25 smcUtils Utility functions for sequential Monte Carlo
2013-02-25 tsbugs Create time series BUGS models
2013-02-24 imputeYn Imputing the last largest censored observation/observations under weighted least squares
2013-02-24 jackknifeKME Jackknife estimates of Kaplan-Meier estimators or integrals
2013-02-23 cmm Categorical Marginal Models
2013-02-23 conf.design Construction of factorial designs
2013-02-23 fit.models fit.models
2013-02-22 cheb Discrete Linear Chebyshev Approximation
2013-02-22 epade Easy Plots
2013-02-22 MEET MEET: Motif Elements Estimation Toolkit
2013-02-22 nonparaeff Nonparametric Methods for Measuring Efficiency and Productivity
2013-02-22 triangle Provides the standard distribution functions for the triangle distribution
2013-02-21 bspec Bayesian spectral inference
2013-02-21 Digiroo2 An application programming interface for generating null models of social contacts based on individuals' space use
2013-02-21 DMR Delete or Merge Regressors for linear model selection
2013-02-21 hash Full feature implementation of hash/associated arrays/dictionaries
2013-02-21 RSAP SAP Netweaver RFC connector for R
2013-02-20 eaf Plots of the Empirical Attainment Function
2013-02-20 microbenchmark Sub microsecond accurate timing functions
2013-02-20 PKI Public Key Infrastucture for R based on the X.509 standard
2013-02-19 designGG Computational tool for designing genetical genomics experiments
2013-02-18 bild bild: a package for BInary Longitudinal Data
2013-02-17 audiolyzR audiolyzR: Give your data a listen
2013-02-17 catenary Fits a catenary to given points
2013-02-17 GetR GetR: Calculate Guttman error trees in R
2013-02-16 BACprior Sensitivity of the Bayesian Adjustment for Confounding (BAC) algorithm to the choice of hyperparameter omega
2013-02-16 HIest Hybrid index estimation
2013-02-16 multinomRob Robust Estimation of Overdispersed Multinomial Regression Models
2013-02-15 Iboot Iboot: iterated bootstrap tests and confidence sets
2013-02-15 smdc Document Similarity
2013-02-14 monreg Nonparametric monotone regression
2013-02-14 pearson7 Maximum Likelihood Inference for the Pearson VII Distribution with Shape Parameter 3/2
2013-02-14 poibin The Poisson Binomial Distribution
2013-02-14 survC1 C-statistics for risk prediction models with censored survival data
2013-02-11 ash David Scott's ASH routines
2013-02-11 gensemble generalized ensemble methods
2013-02-11 mmeln MMELN : Estimation of multinormal mixture distribution
2013-02-11 vitality vitality: Fitting routines for the Vitality family of mortality models
2013-02-09 bayess Bayesian Essentials with R
2013-02-09 Compounding Computing Continuous Distributions
2013-02-09 modiscloud R tools for processing Level 2 Cloud Mask products from MODIS
2013-02-09 SweaveListingUtils Utilities for Sweave together with TeX listings package
2013-02-08 PVR Computes phylogenetic eigenvectors regression (PVR) and phylogenetic signal-representation curve (PSR) (with null and Brownian expectations)
2013-02-08 ternvis Visualisation, verification and calibration of ternary probabilistic forecasts
2013-02-07 beadarrayFilter Bead filtering for Illumina bead arrays
2013-02-07 debug MVB's debugger for R
2013-02-07 galts Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation
2013-02-07 NestedCohort Survival Analysis for Cohorts with Missing Covariate Information
2013-02-07 nlsmsn Fitting nonlinear models with scale mixture of skew-normal distributions
2013-02-07 orddom Ordinal Dominance Statistics
2013-02-07 qrnn Quantile regression neural network
2013-02-06 ExactPath Exact solution paths for regularized LASSO regressions with L_1 penalty
2013-02-06 glmpath L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
2013-02-06 stoichcalc R Functions for Solving Stoichiometric Equations
2013-02-05 exactLoglinTest Monte Carlo Exact Tests for Log-linear models
2013-02-05 fractalrock Generate fractal time series with non-normal returns distribution
2013-02-05 gaussquad Collection of functions for Gaussian quadrature
2013-02-05 ghyp A package on the generalized hyperbolic distribution and its special cases
2013-02-05 pacbpred PAC-Bayesian Estimation and Prediction in Sparse Additive Models
2013-02-04 infoDecompuTE Information Decomposition of Two-phase Experiments
2013-02-04 OOmisc Ozgur-Ozlem Miscellaneous
2013-02-04 orthopolynom Collection of functions for orthogonal and orthonormal polynomials
2013-02-04 timeit Easy profiling of R functions
2013-02-03 degreenet Models for Skewed Count Distributions Relevant to Networks
2013-02-03 futile.any Futile library to provide some polymorphic operations
2013-02-03 pdist Partitioned Distance Function
2013-02-03 TimeProjection Time Projections
2013-02-01 FindIt R Package for Finding Heterogeneous Treatment Effects
2013-02-01 nCDunnett Noncentral Dunnett's test distribution
2013-01-31 ForImp Imputation of missing values through a forward imputation algorithm
2013-01-30 KappaGUI GUI for Cohen's and Fleiss' Kappa
2013-01-30 mlearning Machine learning algorithms with unified interface and confusion matrices
2013-01-30 nephro Biostatistics utilities for nephrology
2013-01-30 randomGLM Random General Linear Model Prediction
2013-01-30 rdryad Dryad API interface
2013-01-30 YieldCurve Modelling and estimation of the yield curve
2013-01-29 DivMelt HRM Diversity Assay Analysis Tool
2013-01-29 EMT Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data
2013-01-29 mobForest Model based Random Forest analysis
2013-01-29 SUE Subsampling method
2013-01-28 deal Learning Bayesian Networks with Mixed Variables
2013-01-28 RcmdrPlugin.plotByGroup Rcmdr plots by group using lattice
2013-01-28 seqPERM Generates a permutation matrix based upon a sequence
2013-01-28 svSweave SciViews GUI API - Sweave functions
2013-01-27 bclust Bayesian clustering using spike-and-slab hierarchical model, suitable for clustering high-dimensional data
2013-01-27 labeltodendro Convert labels or tables to a dendrogram
2013-01-26 emme2 Read and Write to an EMME/2 databank
2013-01-26 shapefiles Read and Write ESRI Shapefiles
2013-01-26 UWHAM Unbinned weighted histogram analysis method (UWHAM)
2013-01-25 FI Provide functions for forest inventory calculations
2013-01-25 metatest Fit and test metaregression models
2013-01-25 misc3d Miscellaneous 3D Plots
2013-01-25 mpt Multinomial Processing Tree (MPT) Models
2013-01-25 pln Polytomous logit-normit (graded logistic) model estimation
2013-01-25 RcmdrPlugin.StatisticalURV Statistical URV Rcmdr Plug-In
2013-01-25 RcmdrPlugin.TeachingDemos Rcmdr Teaching Demos Plug-In
2013-01-24 dichromat Color Schemes for Dichromats
2013-01-24 medSTC A max-margin supervised Sparse Topical Coding Model
2013-01-24 RcmdrPlugin.SLC SLC Rcmdr Plug-in
2013-01-24 SLC Slope and level change
2013-01-23 RcmdrPlugin.KMggplot2 An Rcmdr Plug-In for Kaplan-Meier Plots and Other Plots by Using the ggplot2 Package
2013-01-23 sirad Functions for calculating daily solar radiation and evapotranspiration
2013-01-22 RCALI Calculation of the Integrated Flow of Particles between Polygons
2013-01-21 contfrac Continued fractions
2013-01-21 gemtc.jar GeMTC Java binary
2013-01-21 MM The multiplicative multinomial distribution
2013-01-21 multipol multivariate polynomials
2013-01-21 Oarray Arrays with arbitrary offsets
2013-01-21 randomNames Random name generating function and data set
2013-01-21 RcmdrPlugin.orloca orloca Rcmdr Plug-in
2013-01-21 semPLS Structural Equation Modeling Using Partial Least Squares
2013-01-21 stellaR stellar evolution tracks and isochrones
2013-01-21 TeachingDemos Demonstrations for teaching and learning
2013-01-20 Benchmarking Benchmark and frontier analysis using DEA and SFA
2013-01-20 pequod Moderated regression package
2013-01-20 quantmod Quantitative Financial Modelling Framework
2013-01-19 adaptsmoFMRI Adaptive Smoothing of FMRI Data
2013-01-19 currentSurvival Estimation of CCI and CLFS Functions
2013-01-19 RcppXts Interface the xts API via Rcpp
2013-01-18 BCBCSF Bias-corrected Bayesian Classification with Selected Features
2013-01-18 blockrand Randomization for block random clinical trials
2013-01-18 CVThresh Level-Dependent Cross-Validation Thresholding
2013-01-18 edcc Economic Design of Control Charts
2013-01-18 obsSens Sensitivity analysis for Observational studies
2013-01-18 partitionMap Partition Maps
2013-01-17 GWG Calculation of probabilities for inadequate and excessive gestational weight gain
2013-01-17 RcmdrPlugin.survival R Commander Plug-in for the survival Package
2013-01-16 Bhat General likelihood exploration
2013-01-16 RcppExamples Examples using Rcpp to interface R and C++
2013-01-16 rms.gof Root-mean-square goodness-of-fit test for simple null hypothesis
2013-01-16 setwidth Set the value of options("width") on terminal emulators
2013-01-16 spacodiR Spatial and Phylogenetic Analysis of Community Diversity
2013-01-15 cvAUC Cross-Validated Area Under the ROC Curve Confidence Intervals
2013-01-15 RcppRoll Fast rolling functions through Rcpp and RcppArmadillo
2013-01-15 SMPracticals Practicals for use with Davison (2003) Statistical Models
2013-01-14 ESG ESG - A package for asset projection
2013-01-14 s20x Stats 20x
2013-01-14 samplingbook Survey Sampling Procedures
2013-01-14 subtype Cluster analysis to find molecular subtypes and their assessment
2013-01-14 xoi Tools for analyzing crossover interference
2013-01-13 actuar Actuarial functions
2013-01-13 survivalROC Time-dependent ROC curve estimation from censored survival data
2013-01-12 pass Prediction and Stability Selection of Tuning Parameters
2013-01-11 gtx Genetics ToolboX
2013-01-11 orloca.es Spanish version of orloca package
2013-01-11 Rook Rook - a web server interface for R
2013-01-09 BioPhysConnectoR BioPhysConnectoR
2013-01-09 PROTOLIDAR PRocess TOol LIdar DAta in R
2013-01-09 RcmdrPlugin.mosaic Adds menu items to produce mosaic plots and assoc plots to Rcmdr
2013-01-09 Rniftilib Rniftilib - R Interface to NIFTICLIB (V2.0.0: 2010-07-20)
2013-01-08 clusterGeneration random cluster generation (with specified degree of separation)
2013-01-08 HDclassif High Dimensional Supervised Classification and Clustering
2013-01-08 hier.part Hierarchical Partitioning
2013-01-08 RcmdrPlugin.seeg Rcmdr Plugin for seeg
2013-01-08 riskRegression Risk regression for survival analysis
2013-01-08 tis Time Indexes and Time Indexed Series
2013-01-07 displayHTS displayHTS
2013-01-07 rJPSGCS R-interface to gene drop Java Programs for Statistical Genetics and Computational Statistics (JPSGCS)
2013-01-07 stacomirtools stacomi ODBC connection class
2013-01-06 DCluster Functions for the detection of spatial clusters of diseases
2013-01-05 ETLUtils Utility functions to execute standard ETL operations (using package ff) on large data
2013-01-05 GWASExactHW Exact Hardy-Weinburg testing for Genome Wide Association Studies
2013-01-05 munfold Metric Unfolding
2013-01-05 Stat2Data Datasets for Stat2
2013-01-04 proteomicdesign Optimization of a multi-stage proteomic study
2013-01-04 seeg Statistics for Environmental Sciences, Engineering, and Geography
2013-01-04 sparcl Perform sparse hierarchical clustering and sparse k-means clustering
2013-01-03 ldlasso LD LASSO Regression for SNP Association Study
2013-01-03 partialOR Partial Odds Ratio
2013-01-02 bootES Bootstrap Effect Sizes
2013-01-02 royston Royston's H Test: Multivariate Normality Test
2012-12-31 RcmdrPlugin.SM Rcmdr Sport Management Plug-In
2012-12-30 opefimor Option Pricing and Estimation of Financial Models in R
2012-12-30 RcppClassicExamples Examples using RcppClassic to interface R and C++
2012-12-30 SPSL Site Percolation on Square Lattice (SPSL)
2012-12-29 psytabs Produce well-formatted tables for psychological research
2012-12-28 trapezoid The Trapezoidal Distribution
2012-12-27 bisoreg Bayesian Isotonic Regression with Bernstein Polynomials
2012-12-27 fgui Function GUI
2012-12-27 randomizeBE Function to create a random list for crossover studies
2012-12-25 truncgof GoF tests allowing for left truncated data
2012-12-24 MedOr Median Ordering Statistical R package
2012-12-24 MOCCA Multi-objective optimization for collecting cluster alternatives
2012-12-23 RXKCD Get XKCD comic from R
2012-12-23 svmpath svmpath: the SVM Path algorithm
2012-12-22 DiversitySampler Functions for re-sampling a community matrix to compute diversity indices at different sampling levels
2012-12-22 dyn Time Series Regression
2012-12-22 MetaQC MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis
2012-12-22 proto Prototype object-based programming
2012-12-21 BurStMisc Burns Statistics miscellaneous
2012-12-21 gsg Calculation of selection coefficients
2012-12-21 imputeMDR The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data
2012-12-21 Lock5Data Datasets for "Statistics: UnLocking the Power of Data"
2012-12-21 mvinfluence Influence Measures and Diagnostic Plots for Multivariate Linear Models
2012-12-21 mvnmle ML estimation for multivariate normal data with missing values
2012-12-21 NSA Post-normalization of total copy numbers
2012-12-21 ORMDR ORMDR
2012-12-21 ReCiPa Redundancy Control in Pathways databases
2012-12-21 sperich Auxiliary functions to estimate centers of biodiversity
2012-12-20 hbmem Hierarchical Bayesian Analysis of Recognition Memory
2012-12-19 Kpart Spline Fitting
2012-12-19 LeafAngle Fits, plots, and summarizes leaf angle distributions
2012-12-19 nose nose Package for R
2012-12-17 dblcens Compute the NPMLE of distribution from doubly censored data
2012-12-17 MBESS MBESS
2012-12-17 MFDA Model Based Functional Data Analysis
2012-12-16 WordPools Classical word pools used in studies of learning and memory
2012-12-15 ConjointChecks A package to check the cancellation axioms of conjoint measurement
2012-12-15 cosmoFns Functions for cosmological distances, times, luminosities, etc
2012-12-15 dataframes2xls dataframes2xls writes data frames to xls files
2012-12-15 FastRWeb Fast Interactive Framework for Web Scripting Using R
2012-12-15 LeLogicielR Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french)
2012-12-14 hapsim Haplotype Data Simulation
2012-12-14 ltsa Linear time series analysis
2012-12-14 MuFiCokriging Multi-Fidelity Cokriging models
2012-12-14 Rsolnp General Non-linear Optimization
2012-12-13 seqinr Biological Sequences Retrieval and Analysis
2012-12-13 snowFT Fault Tolerant Simple Network of Workstations
2012-12-12 FinancialInstrument Financial Instrument Model Infrastructure for R
2012-12-12 nutshell Data for "R in a Nutshell"
2012-12-12 nutshell.audioscrobbler Audioscrobbler data for "R in a Nutshell"
2012-12-12 nutshell.bbdb Baseball Database for "R in a Nutshell"
2012-12-12 OptInterim Optimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint
2012-12-11 IndependenceTests Nonparametric tests of independence between random vectors
2012-12-11 TUWmodel Lumped hydrological model developed at the Vienna University of Technology for education purposes
2012-12-10 ftnonpar Features and Strings for Nonparametric Regression
2012-12-10 ifs Iterated Function Systems
2012-12-10 SampleSizeMeans Sample size calculations for normal means
2012-12-08 Bmix Bayesian Sampling for Stick-breaking Mixtures
2012-12-08 RDIDQ It perform Quality check on data
2012-12-08 rpartScore Classification trees for ordinal responses
2012-12-07 MultinomialCI Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz
2012-12-07 Rdistance Distance sampling analyses
2012-12-07 SvyNom Nomograms for Right-Censored Outcomes from Survey Designs
2012-12-06 stringr Make it easier to work with strings
2012-12-05 gtable Arrange grobs in tables
2012-12-05 simba A Collection of functions for similarity analysis of vegetation data
2012-12-04 glmc Fitting Generalized Linear Models Subject to Constraints
2012-12-04 httpRequest Basic HTTP Request
2012-12-04 soilwater soilwater: Implements parametric formulas for soil water retention or conductivity curve
2012-12-04 source.gist Read R code from a GitHub Gist
2012-12-03 KMsurv Data sets from Klein and Moeschberger (1997), Survival Analysis
2012-12-03 muma Metabolomics Univariate and Multivariate Analysis
2012-12-02 brainwaver Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory
2012-12-02 emdist Earth Mover's Distance
2012-12-02 fracdiff Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
2012-12-01 ffmanova Fifty-fifty MANOVA
2012-12-01 sybilDynFBA Dynamic FBA : dynamic flux balance analysis
2012-11-30 gcookbook Data for "R Graphics Cookbook"
2012-11-30 operator.tools Utilities for working with R's operators
2012-11-28 goric Generalized Order-Restricted Information Criterion
2012-11-28 LMest Fit Latent Markov models in basic versions
2012-11-28 PenLNM Group l1 penalized logistic normal multinomial (LNM) regression model
2012-11-28 plmm Partially Linear Mixed Effects Model
2012-11-27 bootRes Bootstrapped Response and Correlation Functions
2012-11-27 JASPAR R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
2012-11-27 TFX R API to TrueFX(tm)
2012-11-26 distfree.cr Distribution-free confidence region (distfree.cr)
2012-11-26 maptree Mapping, pruning, and graphing tree models
2012-11-26 rts Raster time series analysis
2012-11-25 gRc Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
2012-11-24 pairedCI Confidence intervals for the ratio of locations and for the ratio of scales of two paired samples
2012-11-24 stepwise Stepwise detection of recombination breakpoints
2012-11-24 W2CWM2C The W2CWM2C package is a set of functions to produce new graphical tools for wavelet correlation (bivariate and multivariate cases) using some routines from the waveslim and wavemulcor packages
2012-11-23 rvertnet Search VertNet database from R
2012-11-21 rich Computes and compares species richnesses
2012-11-20 ChoiceModelR Choice Modeling in R
2012-11-20 LTPDvar LTPD and AOQL plans for acceptance sampling inspection by variables
2012-11-20 sciplot Scientific Graphing Functions for Factorial Designs
2012-11-20 stppResid Perform residual analysis on space-time point process models
2012-11-20 tnet tnet: Software for Analysis of Weighted, Two-mode, and Longitudinal networks
2012-11-18 systemfit Estimating Systems of Simultaneous Equations
2012-11-17 BAEssd Bayesian Average Error approach to Sample Size Determination
2012-11-17 HWEintrinsic Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem
2012-11-17 mederrRank Bayesian Methods for Identifying the Most Harmful Medication Errors
2012-11-17 spectralGP Approximate Gaussian processes using the Fourier basis
2012-11-16 StMoSim Simulate QQ-Norm-Plot
2012-11-15 epibasix Elementary Epidemiological Functions for Epidemiology and Biostatistics
2012-11-15 PAWL Implementation of the PAWL algorithm
2012-11-15 sendmailR send email using R
2012-11-14 bindata Generation of Artificial Binary Data
2012-11-14 linLIR linear Likelihood-based Imprecise Regression
2012-11-13 ade4TkGUI ade4 Tcl/Tk Graphical User Interface
2012-11-13 adimpro Adaptive Smoothing of Digital Images
2012-11-13 ismev An Introduction to Statistical Modeling of Extreme Values
2012-11-13 mixcat Mixed effects cumulative link and logistic regression models
2012-11-13 plsdepot Partial Least Squares (PLS) Data Analysis Methods
2012-11-13 stratification Univariate Stratification of Survey Populations
2012-11-13 TSA Time Series Analysis
2012-11-11 egonet Tool for ego-centric measures in Social Network Analysis
2012-11-11 lcd Learn Chain graphs via Decomposition
2012-11-11 nlt A nondecimated lifting transform for signal denoising
2012-11-09 apTreeshape Analyses of Phylogenetic Treeshape
2012-11-09 Rhh Calculating multilocus heterozygosity and heterozygosity-heterozygosity correlation
2012-11-09 STAR Spike Train Analysis with R
2012-11-08 mtsdi Multivariate time series data imputation
2012-11-08 rAltmetric Retrieves altmerics data for any published paper from altmetrics.com
2012-11-07 Davies The Davies quantile function
2012-11-07 DSpat Spatial modelling for distance sampling data
2012-11-07 fExoticOptions Exotic Option Valuation
2012-11-07 ResistorArray electrical properties of resistor networks
2012-11-07 waved Wavelet Deconvolution
2012-11-06 adlift An adaptive lifting scheme algorithm
2012-11-06 coda Output analysis and diagnostics for MCMC
2012-11-06 nparcomp Perform multiple comparisons and compute simultaneous confidence intervals for the nonparametric relative contrast effects
2012-11-06 penalized L1 (lasso and fused lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model
2012-11-06 vowels Vowel Manipulation, Normalization, and Plotting
2012-11-05 CHsharp Choi and Hall Clustering in 3d
2012-11-05 homtest Homogeneity tests for Regional Frequency Analysis
2012-11-05 scagnostics Compute scagnostics - scatterplot diagnostics
2012-11-03 mcmcplots Create Plots from MCMC Output
2012-11-03 mlica2 Independent Component Analysis using Maximum Likelihood
2012-11-03 tableplot Represents tables as semi-graphic displays
2012-11-02 frmqa The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance
2012-11-02 IDPmisc Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)
2012-11-02 mratios Inferences for ratios of coefficients in the general linear model
2012-11-02 smirnov Provides two taxonomic coefficients from E. S. Smirnov "Taxonomic analysis" (1969) book
2012-11-01 argosfilter Argos locations filter
2012-11-01 fpow Computing the noncentrality parameter of the noncentral F distribution
2012-11-01 isopam Isopam (Clustering)
2012-11-01 MindOnStats Data sets included in Utts and Heckard's Mind on Statistics
2012-11-01 SwissAir Air Quality Data of Switzerland for one year in 30 min Resolution
2012-11-01 xgobi Interface to the XGobi and XGvis programs for graphical data analysis
2012-10-31 dynCorr Dynamic Correlation Package
2012-10-31 NORMT3 Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t
2012-10-31 pbivnorm Vectorized Bivariate Normal CDF
2012-10-31 waveband Computes credible intervals for Bayesian wavelet shrinkage
2012-10-30 Actigraphy Actigraphy Data Analysis
2012-10-30 cat Analysis of categorical-variable datasets with missing values
2012-10-30 cudaBayesregData Data sets for the examples used in the package "cudaBayesreg"
2012-10-30 degenes Detection of differentially expressed genes
2012-10-30 dglm Double generalized linear models
2012-10-30 expsmooth Data sets from "Forecasting with exponential smoothing"
2012-10-30 fma Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998)
2012-10-30 gnumeric Read data from files readable by gnumeric
2012-10-30 ScreenClean Screen and clean variable selection procedures
2012-10-30 speff2trial Semiparametric efficient estimation for a two-sample treatment effect
2012-10-30 waterfall Waterfall Charts in R
2012-10-29 ACCLMA ACC & LMA Graph Plotting
2012-10-29 AdaptFit Adaptive Semiparametic Regression
2012-10-29 Agreement Statistical Tools for Measuring Agreement
2012-10-29 alabama Constrained nonlinear optimization
2012-10-29 allan Automated Large Linear Analysis Node
2012-10-29 allanvar Allan Variance Analysis
2012-10-29 AllPossibleSpellings Computes all of a word's possible spellings
2012-10-29 anapuce Tools for microarray data analysis
2012-10-29 andrews Andrews curves
2012-10-29 anesrake ANES Raking Implementation
2012-10-29 APSIMBatch Analysis the output of Apsim software
2012-10-29 audit Bounds for Accounting Populations
2012-10-29 BaM Functions and datasets for books by Jeff Gill
2012-10-29 batade HTML reports and so on
2012-10-29 bayespref Hierarchical Bayesian analysis of ecological count data
2012-10-29 BayHaz R Functions for Bayesian Hazard Rate Estimation
2012-10-29 bentcableAR Bent-Cable Regression for Independent Data or Autoregressive Time Series
2012-10-29 betafam Detecting rare variants for quantitative traits using nuclear families
2012-10-29 betaper Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data
2012-10-29 bethel Bethel's algorithm
2012-10-29 BGSIMD Block Gibbs Sampler with Incomplete Multinomial Distribution
2012-10-29 bimetallic Power for SNP analyses using silver standard cases
2012-10-29 Biodem Biodemography functions
2012-10-29 biopara Self-contained parallel system for R
2012-10-29 bivarRIpower Sample size calculations for bivariate longitudinal data
2012-10-29 biwt Functions to compute the biweight mean vector and covariance & correlation matrices
2012-10-29 bootspecdens Testing equality of spectral densities
2012-10-29 CARramps Reparameterized and marginalized posterior sampling for conditional autoregressive models
2012-10-29 CCA Canonical correlation analysis
2012-10-29 CCP Significance Tests for Canonical Correlation Analysis (CCA)
2012-10-29 CDFt Statistical downscaling through CDF-transform
2012-10-29 CircStats Circular Statistics, from "Topics in circular Statistics" (2001)
2012-10-29 CMC Cronbach-Mesbah Curve
2012-10-29 colorRamps Builds color tables
2012-10-29 combinat combinatorics utilities
2012-10-29 CombMSC Combined Model Selection Criteria
2012-10-29 comorbidities Categorizes ICD-9-CM codes based on published comorbidity indices
2012-10-29 CompareTests Estimate diagnostic accuracy (sensitivity, specificity, etc) and agreement statistics when one test is conducted on only a subsample of specimens
2012-10-29 compoisson Conway-Maxwell-Poisson Distribution
2012-10-29 concor Concordance
2012-10-29 ConvergenceConcepts Seeing convergence concepts in action
2012-10-29 COP Variables selection for index models via correlation pursuit
2012-10-29 cotrend Consistant Cotrend Rank Selection
2012-10-29 cumSeg Change point detection in genomic sequences
2012-10-29 dbConnect Provides a graphical user interface to connect with databases that use MySQL
2012-10-29 dinamic DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors
2012-10-29 discretization Data preprocessing, discretization for classification
2012-10-29 divagis Provides tools for quality checks of georeferenced plant species accessions
2012-10-29 dpa Dynamic Path Approach
2012-10-29 drm Regression and association models for repeated categorical data
2012-10-29 DTDA Doubly truncated data analysis
2012-10-29 EbayesThresh Empirical Bayes Thresholding and Related Methods
2012-10-29 eigeninv Generates (dense) matrices that have a given set of eigenvalues
2012-10-29 elec Collection of functions for statistical election audits
2012-10-29 EMJumpDiffusion EM-Algorithm for Jump Diffusion processes
2012-10-29 emplik2 Empirical-likelihood test (two-sample, censored data)
2012-10-29 EngrExpt Data sets from "Introductory Statistics for Engineering Experimentation"
2012-10-29 evora Epigenetic Variable Outliers for Risk prediction Analysis
2012-10-29 eyetracking Eyetracking Helper Functions
2012-10-29 FactMixtAnalysis Factor Mixture Analysis with covariates
2012-10-29 FAdist Distributions that are sometimes used in hydrology
2012-10-29 FAwR Functions and Datasets for "Forest Analytics with R"
2012-10-29 fgac Generalized Archimedean Copula
2012-10-29 fit4NM NONMEM platform
2012-10-29 Flury Data Sets from Flury, 1997
2012-10-29 forensic Statistical Methods in Forensic Genetics
2012-10-29 forward Forward search
2012-10-29 FourScores FourScores - A game for two players
2012-10-29 freqMAP Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate
2012-10-29 frt Full Randomization Test
2012-10-29 FTICRMS Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data
2012-10-29 GA4Stratification A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling
2012-10-29 GAD GAD: Analysis of variance from general principles
2012-10-29 GANPAdata The GANPA Datasets Package
2012-10-29 gbs Package for Generalized Birnbaum-Saunders Distributions
2012-10-29 GeneF Package for Generalized F-statistics
2012-10-29 GeneReg Construct time delay gene regulatory network
2012-10-29 geomapdata Data for topographic and Geologic Mapping
2012-10-29 gibbs.met Naive Gibbs Sampling with Metropolis Steps
2012-10-29 globalboosttest Testing the additional predictive value of high-dimensional data
2012-10-29 gPdtest Bootstrap goodness-of-fit test for the generalized Pareto distribution
2012-10-29 gwerAM Controlling the genome-wide type I error rate in association mapping experiments
2012-10-29 HadoopStreaming Utilities for using R scripts in Hadoop streaming
2012-10-29 HAPim HapIM
2012-10-29 haplo.ccs Estimate Haplotype Relative Risks in Case-Control Data
2012-10-29 heatmap.plus Heatmap with more sensible behavior
2012-10-29 HMR Flux estimation with static chamber data
2012-10-29 holdem Texas Holdem simulator
2012-10-29 homeR Functions useful for building physics
2012-10-29 hotspots Hot spots
2012-10-29 HPbayes Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling
2012-10-29 icomp ICOMP criterion
2012-10-29 igraphtosonia Convert iGraph graps to SoNIA .son files
2012-10-29 Imap Interactive Mapping
2012-10-29 IMIS Increamental Mixture Importance Sampling
2012-10-29 ImpactIV Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method
2012-10-29 InfDim Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories
2012-10-29 insideRODE insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes
2012-10-29 integrOmics end of integrOmics package
2012-10-29 Interpol Interpolation of amino acid sequences
2012-10-29 intRegGOF Integrated Regression Goodness of Fit
2012-10-29 introgress methods for analyzing introgression between divergent lineages
2012-10-29 ISDA.R interval symbolic data analysis for R
2012-10-29 isopat Calculation of isotopic pattern for a given molecular formula
2012-10-29 Julia Fractal Image Data Generator
2012-10-29 klin Linear equations with Kronecker structure
2012-10-29 KsPlot Check the power of seveal statistical models
2012-10-29 kzft Kolmogorov-Zurbenko Fourier Transform and Applications
2012-10-29 lmec Linear Mixed-Effects Models with Censored Responses
2012-10-29 lqa Penalized Likelihood Inference for GLMs
2012-10-29 lss the accelerated failure time model to right censored data based on least-squares principle
2012-10-29 LTR Perform LTR analysis on microarray data
2012-10-29 MAc Meta-Analysis with Correlations
2012-10-29 MAclinical Class prediction based on microarray data and clinical parameters
2012-10-29 mAr Multivariate AutoRegressive analysis
2012-10-29 MBCluster.Seq Model-Based Clustering for RNA-seq Data
2012-10-29 MChtest Monte Carlo hypothesis tests with Sequential Stopping
2012-10-29 metaMA Meta-analysis for MicroArrays
2012-10-29 Miney Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)
2012-10-29 minxent Entropy Optimization Distributions
2012-10-29 miP Multiple Imputation Plots
2012-10-29 mixdist Finite Mixture Distribution Models
2012-10-29 mixedQF Estimator with Qudratics Forms in Mixeds Models
2012-10-29 MKLE Maximum kernel likelihood estimation
2012-10-29 mpa CoWords Method
2012-10-29 multibiplotGUI Multibiplot Analysis in R
2012-10-29 mvsf Shapiro-Francia Multivariate Normality Test
2012-10-29 NetCluster Clustering for networks
2012-10-29 NetData Network Data for McFarland's SNA R labs
2012-10-29 NightDay Night and Day Boundary Plot Funtion
2012-10-29 nlADG Regression in the Normal Linear ADG Model
2012-10-29 NMFN Non-negative Matrix Factorization
2012-10-29 normwhn.test Normality and White Noise Testing
2012-10-29 NPMPM tertiary probabilistic model in predictive microbiology for use in food manufacture
2012-10-29 nppbib Nonparametric Partially-Balanced Incomplete Block Design Analysis
2012-10-29 OligoSpecificitySystem Oligo Specificity System
2012-10-29 omd filter the molecular descriptors for QSAR
2012-10-29 oncomodel Maximum likelihood tree models for oncogenesis
2012-10-29 OPE Outer-product emulator
2012-10-29 ORDER2PARENT Estimate parent distributions with data of several order statistics
2012-10-29 ORIClust Order-restricted Information Criterion-based Clustering Algorithm
2012-10-29 paleoMAS Paleoecological Analysis
2012-10-29 pamm Power analysis for random effects in mixed models
2012-10-29 parfossil Parallelized functions for palaeoecological and palaeogeographical analysis
2012-10-29 parviol Parviol
2012-10-29 PASWR PROBABILITY and STATISTICS WITH R
2012-10-29 Peaks Peaks
2012-10-29 penalizedSVM Feature Selection SVM using penalty functions
2012-10-29 permtest Permutation test to compare variability within and distance between two groups
2012-10-29 pesticides Analysis of single serving and composite pesticide residue measurements
2012-10-29 pGLS Generalized Least Square in comparative Phylogenetics
2012-10-29 phylotools Phylogenetic tools for Eco-phylogenetics
2012-10-29 PKmodelFinder Software for Pharmacokinetic model
2012-10-29 plsgenomics PLS analyses for genomics
2012-10-29 poistweedie Poisson-Tweedie exponential family models
2012-10-29 PopGenKit Useful functions for (batch) file conversion and data resampling in microsatellite datasets
2012-10-29 ppcor Partial and Semi-partial (Part) correlation
2012-10-29 pps Functions for PPS sampling
2012-10-29 pragma Provides a pragma / directive / keyword syntax for R
2012-10-29 PredictiveRegression Prediction Intervals for Three Basic Statistical Models
2012-10-29 predmixcor Classification rule based on Bayesian mixture models with feature selection bias corrected
2012-10-29 ProbForecastGOP Probabilistic weather forecast using the GOP method
2012-10-29 pwr Basic functions for power analysis
2012-10-29 qlspack Quasi Least Square Package
2012-10-29 qPCR.CT qPCR data analysis and plot package
2012-10-29 qtlDesign Design of QTL experiments
2012-10-29 rdetools Relevant Dimension Estimation (RDE) in Feature Spaces
2012-10-29 reams Resampling-Based Adaptive Model Selection
2012-10-29 Records Record Values and Record Times
2012-10-29 REQS R/EQS Interface
2012-10-29 RHT Regularized Hotelling's T-square Test for Pathway (Gene Set) Analysis
2012-10-29 ringscale Ringscale
2012-10-29 rmeta Meta-analysis
2012-10-29 robustreg Robust Regression Functions
2012-10-29 ROCwoGS Non-parametric estimation of ROC curves without Gold Standard Test
2012-10-29 RODM R interface to Oracle Data Mining
2012-10-29 RPyGeo ArcGIS Geoprocessing in R via Python
2012-10-29 Rsundials Suite of Nonlinear Differential Algebraic Equations Solvers in R
2012-10-29 rSymPy R interface to SymPy computer algebra system
2012-10-29 sbgcop Semiparametric Bayesian Gaussian copula estimation and imputation
2012-10-29 sddpack Semidiscrete Decomposition
2012-10-29 sdef Synthesizing List of Differentially Expressed Features
2012-10-29 separationplot Separation Plots
2012-10-29 seqCBS CN Profiling using Sequencing and CBS
2012-10-29 seqmon Sequential Monitoring of Clinical Trials
2012-10-29 seqRFLP Simulation and visualization of restriction enzyme cutting pattern from DNA sequences
2012-10-29 session Functions for interacting with, saving and restoring R sessions
2012-10-29 SiZer SiZer: Significant Zero Crossings
2012-10-29 skewt The Skewed Student-t Distribution
2012-10-29 smco A simple Monte Carlo optimizer using adaptive coordinate sampling
2012-10-29 SMIR Companion to Statistical Modelling in R
2012-10-29 SMVar Structural Model for variances
2012-10-29 SNPmaxsel Maximally selected statistics for SNP data
2012-10-29 spi Compute SPI index
2012-10-29 sporm Semiparametric proportional odds rate model
2012-10-29 sra Selection Response Analysis
2012-10-29 ssanv Sample Size Adjusted for Nonadherence or Variability of input parameters
2012-10-29 ssize.fdr Sample Size Calculations for Microarray Experiments
2012-10-29 Stem Spatio-temporal models in R
2012-10-29 stepp Subpopulation Treatment Effect Pattern Plot (STEPP)
2012-10-29 stinepack Stineman, a consistently well behaved method of interpolation
2012-10-29 stratigraph Toolkit for the plotting and analysis of stratigraphic and palaeontological data
2012-10-29 StressStrength Computation and estimation of reliability of stress-strength models
2012-10-29 symbols Symbol plots
2012-10-29 TANOVA Time Course Analysis of Variance for Microarray
2012-10-29 TERAplusB Test for A+B Traditional Escalation Rule
2012-10-29 tfer Forensic Glass Transfer Probabilities
2012-10-29 titan Titration analysis for mass spectrometry data
2012-10-29 TRIANG Symmetric discrete triangular distributions
2012-10-29 TRIANGG General discrete triangular distribution
2012-10-29 trifield Some basic facilities for ternary fields and plots
2012-10-29 trimcluster Cluster analysis with trimming
2012-10-29 tslars Least angle regression for time series analysis
2012-10-29 Tsphere Transposable Sphering for Large-Scale Inference with Correlated Data
2012-10-29 unbalhaar Function estimation via Unbalanced Haar wavelets
2012-10-29 UScensus2000blkgrp US Census 2000 Block Group Shapefiles and Additional Demographic Data
2012-10-29 UScensus2000cdp US Census 2000 Designated Places Shapefiles and Additional Demographic Data
2012-10-29 UScensus2000tract US Census 2000 Tract Level Shapefiles and Additional Demographic Data
2012-10-29 vegetarian Jost Diversity Measures for Community Data
2012-10-29 VIF VIF Regression: A Fast Regression Algorithm For Large Data
2012-10-29 violinmplot Combination of violin plot with mean and standard deviation
2012-10-29 walkscoreAPI Walk Score and Transit Score API
2012-10-29 WaveCD Wavelet change point detection for array CGH data
2012-10-29 wavemulcor Wavelet routine for multiple correlation
2012-10-29 wikibooks Functions and datasets of the german WikiBook "GNU R"
2012-10-29 WilcoxCV Wilcoxon-based variable selection in cross-validation
2012-10-29 wombsoft Wombling Computation
2012-10-29 write.snns Function for exporting data to SNNS pattern files
2012-10-29 wSVM Weighted SVM with boosting algorithm for improving accuracy
2012-10-29 yacca Yet Another Canonical Correlation Analysis Package
2012-10-27 nlmeODE Non-linear mixed-effects modelling in nlme using differential equations
2012-10-26 joineR Joint modelling of repeated measurements and time-to-event data
2012-10-25 locpol Kernel local polynomial regression
2012-10-24 CARE1 Statistical package for population size estimation in capture-recapture models
2012-10-24 dpglasso Primal Graphical Lasso
2012-10-23 pheno Auxiliary functions for phenological data analysis
2012-10-23 RGtk2Extras Data frame editor and dialog making wrapper for RGtk2
2012-10-22 detrendeR Start the detrendeR Graphical User Interface (GUI)
2012-10-22 landsat Radiometric and topographic correction of satellite imagery
2012-10-21 capme Covariate Adjusted Precision Matrix Estimation
2012-10-20 MBI (M)ultiple-site (B)iodiversity (I)ndices Calculator
2012-10-19 DiscreteInverseWeibull Discrete inverse Weibull distribution
2012-10-19 SMR Studentized Midrange Distribution
2012-10-19 TwoCop Nonparametric test of equality between two copulas
2012-10-18 breakage SICM pipette tip geometry estimation
2012-10-18 HiPLARM High Performance Linear Algebra in R
2012-10-17 bmk MCMC diagnostics package
2012-10-17 linprog Linear Programming / Optimization
2012-10-16 PhaseType Inference for Phase-type Distributions
2012-10-15 lineup Lining up two sets of measurements
2012-10-15 modeest Mode Estimation
2012-10-15 npde Normalised prediction distribution errors for nonlinear mixed-effect models
2012-10-15 orcutt Estimate procedure in case of first order autocorrelation
2012-10-15 Ridit Ridit Analysis (An extension of the Kruskal-Wallis Test.)
2012-10-14 lda Collapsed Gibbs sampling methods for topic models
2012-10-14 numDeriv Accurate Numerical Derivatives
2012-10-12 ChemometricsWithRData Data for package ChemometricsWithR
2012-10-11 AutoSEARCH General-to-Specific (GETS) Model Selection
2012-10-11 FlexParamCurve Tools to Fit Flexible Parametric Curves
2012-10-11 powerpkg Power analyses for the affected sib pair and the TDT design
2012-10-10 PoissonSeq Significance analysis of sequencing data based on a Poisson log linear model
2012-10-08 expoRkit Expokit in R
2012-10-05 r2stl r2stl, R package for visualizing data using a 3D printer
2012-10-05 Rivivc In vitro in vivo correlation linear level A
2012-10-04 fastSOM Fast Calculation of Spillover Measures
2012-10-04 FRCC Fast Regularized Canonical Correlation Analysis
2012-10-04 freeknotsplines Free-Knot Splines
2012-10-04 rrBlupMethod6 Re-parametrization of RR-BLUP to allow for a fixed residual variance
2012-10-03 rworldxtra Country boundaries at high resolution
2012-10-02 CONORData CONORData
2012-10-01 biasbetareg Bias correction of the parameter estimates of the beta regression model
2012-10-01 gbRd Utilities for processing Rd objects and files
2012-10-01 loop loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology
2012-09-30 epitools Epidemiology Tools
2012-09-29 astroFns Astronomy: time and position functions, misc. utilities
2012-09-29 trackObjs Track Objects (last release - package name changed to 'track')
2012-09-28 hierarchicalDS Functions for performing hierarchical analysis of distance sampling data
2012-09-28 reccsim Simulation of Rare Events Case-Control Studies
2012-09-27 Brq Bayesian analysis of quantile regression models
2012-09-27 monmlp Monotone multi-layer perceptron neural network
2012-09-27 RWeather R wrapper around the Yahoo! Weather, Google Weather and NOAA APIs
2012-09-26 ccChooser Developing a core collections
2012-09-26 risksetROC Riskset ROC curve estimation from censored survival data
2012-09-26 smcure Fit Semiparametric Mixture Cure Models
2012-09-26 spatgraphs Graphs for spatial point patterns
2012-09-25 emoa Evolutionary Multiobjective Optimization Algorithms
2012-09-22 NonpModelCheck Model Checking and Variable Selection in Nonparametric Regression
2012-09-20 binomialcftp Generates binomial random numbers via the coupling from the past algorithm
2012-09-20 neuralnet Training of neural networks
2012-09-20 tframe Time Frame coding kernel
2012-09-19 epicalc Epidemiological calculator
2012-09-19 namespace Provide namespace managment functions not (yet) present in base R
2012-09-19 nparLD Nonparametric Analysis of Longitudinal Data in Factorial Experiments
2012-09-18 MitISEM Mixture of Student t Distributions using Importance Sampling and Expectation Maximization
2012-09-18 msSurv Nonparametric Estimation for Multistate Models
2012-09-17 Giza Constructing panels of population pyramid plots based on lattice
2012-09-15 abcdeFBA ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package
2012-09-15 matrixcalc Collection of functions for matrix calculations
2012-09-14 ActuDistns Functions for actuarial scientists
2012-09-14 cslogistic Conditionally Specified Logistic Regression
2012-09-14 DPpackage Bayesian nonparametric modeling in R
2012-09-14 okmesonet Retrieve Oklahoma Mesonet climatological data
2012-09-14 WCQ Detection of QTL effects in a small mapping population
2012-09-13 JavaGD Java Graphics Device
2012-09-13 robfilter Robust Time Series Filters
2012-09-13 spcov Sparse Estimation of a Covariance Matrix
2012-09-12 rdyncall Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries (e.g. OpenGL)
2012-09-12 Sleuth2 Data sets from Ramsey and Schafer's "Statistical Sleuth (2nd ed)"
2012-09-11 BayesNI BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints
2012-09-11 CePa Centrality-based pathway enrichment
2012-09-10 hmeasure The H-measure and other scalar classification performance metrics
2012-09-10 paran Horn's Test of Principal Components/Factors
2012-09-06 FMStable Finite Moment Stable Distributions
2012-09-06 NISTnls Nonlinear least squares examples from NIST
2012-09-06 pi0 Estimating the proportion of true null hypotheses for FDR
2012-09-05 hbsae Hierarchical Bayesian Small Area Estimation
2012-09-04 granovaGG Graphical Analysis of Variance Using ggplot2
2012-09-04 ipdmeta Tools for subgroup analyses with multiple trial data using aggregate statistics
2012-09-04 miniGUI tktcl quick and simple function GUI
2012-09-04 mlPhaser Multi-Locus Haplotype Phasing
2012-09-04 survAUC Estimators of prediction accuracy for time-to-event data
2012-09-03 PIPS Predicted Interval Plots
2012-09-02 pso Particle Swarm Optimization
2012-09-01 openintro OpenIntro data sets and supplemental functions
2012-09-01 sca Simple Component Analysis
2012-09-01 twoStageGwasPower Compute thresholds and power for two-stage gwas
2012-08-31 clusteval Evaluation of Clustering Algorithms
2012-08-31 kSamples K-Sample Rank Tests and their Combinations
2012-08-31 NetComp Network Generation and Comparison
2012-08-30 evd Functions for extreme value distributions
2012-08-30 fmt Variance estimation of FMT method (Fully Moderated t-statistic)
2012-08-30 rbenchmark Benchmarking routine for R
2012-08-30 Sejong KoNLP static dictionaries and Sejong project resources
2012-08-29 MetabolAnalyze Probabilistic latent variable models for metabolomic data
2012-08-29 tightClust Tight Clustering
2012-08-28 logitnorm Functions for the logitnormal distribution
2012-08-28 playwith A GUI for interactive plots using GTK+
2012-08-25 prabclus Functions for clustering of presence-absence, abundance and multilocus genetic data
2012-08-24 regtest Regression testing
2012-08-24 rindex Indexing for R
2012-08-24 SearchTrees Spatial Search Trees
2012-08-24 seem Simulation of Ecological and Environmental Models
2012-08-24 STARSEQ Secondary Trait Association analysis for Rare variants via SEQuence data
2012-08-23 gaussDiff Difference measures for multivariate Gaussian probability density functions
2012-08-23 muStat Prentice Rank Sum Test and McNemar Test
2012-08-23 Simpsons Detecting Simpson's Paradox
2012-08-23 smoothmest Smoothed M-estimators for 1-dimensional location
2012-08-22 LifeTables A package to implement HMD model life table system
2012-08-22 Rlab Functions and Datasets Required for ST370 class
2012-08-22 samplesize Sample size calculation for various t-Tests and Wilcoxon-Test
2012-08-22 sitools Format a number to a string with SI prefix
2012-08-22 VPdtw Variable Penalty Dynamic Time Warping
2012-08-21 BigTSP Top Scoring Pair based methods for classification
2012-08-21 flashClust Implementation of optimal hierarchical clustering
2012-08-21 labstatR Libreria del Laboratorio di Statistica con R
2012-08-20 quantchem Quantitative chemical analysis: calibration and evaluation of results
2012-08-19 cudia CUDIA Cross-level Imputation
2012-08-19 cxxfunplus extend cxxfunction by saving the dynamic shared objects
2012-08-19 ddst Data driven smooth test
2012-08-19 MATTOOLS Modern Calibration Functions for the Modern Analog Technique (MAT)
2012-08-19 MSG Data and functions for the book Modern Statistical Graphics
2012-08-19 RPCLR RPCLR (Random-Penalized Conditional Logistic Regression)
2012-08-17 arrayhelpers Convenience functions for arrays
2012-08-17 DAKS Data Analysis and Knowledge Spaces
2012-08-17 fechner Fechnerian Scaling of Discrete Object Sets
2012-08-17 PresenceAbsence Presence-Absence Model Evaluation
2012-08-17 SAScii Import ASCII files directly into R using only a SAS input script
2012-08-16 capwire Estimates population size from non-invasive sampling
2012-08-16 lava.tobit LVM with censored and binary outcomes
2012-08-15 treelet Treelets - an adaptive multi-scale basis for high-dimensional, sparse and unordered data
2012-08-14 aspace A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
2012-08-14 binGroup Evaluation and experimental design for binomial group testing
2012-08-14 rHpcc Interface between HPCC and R
2012-08-13 depth Depth functions tools for multivariate analysis
2012-08-13 kerdiest Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions
2012-08-13 SQN subset quantile normalization
2012-08-13 TauP.R Earthquake Traveltime Calculations for 1-D Earth Models
2012-08-11 boostSeq Optimized GWAS cohort subset selection for resequencing studies
2012-08-11 PLIS Multiplicity control using Pooled LIS statistic
2012-08-11 TSEN Two-dimensional peak sentinel tool for GC x GC-HRTOFMS
2012-08-10 asympTest Asymptotic statistic
2012-08-10 IC2 Inequality and Concentration Indices and Curves
2012-08-10 KrigInv Kriging-based Inversion for Deterministic and Noisy Computer Experiments
2012-08-10 MetaDE MetaDE: Microarray meta-analysis for differentially expressed gene detection
2012-08-10 obliqueRF Oblique Random Forests from Recursive Linear Model Splits
2012-08-10 SAFD Statistical Analysis of Fuzzy Data
2012-08-09 bvenn A Simple alternative to proportional Venn diagrams
2012-08-09 BVS Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
2012-08-09 dlmap Detection Localization Mapping for QTL
2012-08-09 FormalSeries Elementary arithemtic in formal series rings
2012-08-09 gridExtra functions in Grid graphics
2012-08-09 modelfree Model-free estimation of a psychometric function
2012-08-09 p2distance Welfare's Synthetic Indicator
2012-08-08 AquaEnv AquaEnv - an integrated development toolbox for aquatic chemical model generation
2012-08-08 fugeR FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic
2012-08-07 semGOF Goodness-of-fit indexes for structural equation models
2012-08-06 mcmcse Monte Carlo Standard Errors for MCMC
2012-08-06 notifyR Send push notifications to your smartphone via pushover.net (ACCOUNT REQUIRED!)
2012-08-05 deamer Deconvolution density estimation with adaptive methods for a variable prone to measurement error
2012-08-05 proj4 A simple interface to the PROJ.4 cartographic projections library
2012-08-04 R2PPT Simple R Interface to Microsoft PowerPoint using rcom or RDCOMClient
2012-08-03 crblocks Categorical Randomized Block Data Analysis
2012-08-03 rAverage Parameter estimation for the averaging model of Information Integration Theory
2012-08-02 coexist Species coexistence modeling and analysis
2012-08-02 crn Downloads and Builds datasets for Climate Reference Network
2012-08-01 Runiversal Runiversal - Package for converting R objects to Java variables and XML
2012-08-01 sBF Smooth Backfitting
2012-08-01 TSAgg Time series Aggregation
2012-08-01 visualizationTools Package contains a few functions to visualize statistical circumstances
2012-07-31 gumbel Gumbel copula
2012-07-31 rtape Manage and manipulate large collections of R objects stored as tape-like files
2012-07-30 EstCRM Calibrating Parameters for the Samejima's Continuous IRT Model
2012-07-30 HyPhy Macroevolutionary phylogentic analysis of species trees and gene trees
2012-07-30 rJython R interface to Python via Jython
2012-07-28 BaylorEdPsych R Package for Baylor University Educational Psychology Quantitative Courses
2012-07-28 gogarch Generalized Orthogonal GARCH (GO-GARCH) models
2012-07-27 OneHandClapping Prediction of condition-specific transcription factor interactions
2012-07-27 PredictABEL Assessment of risk prediction models
2012-07-26 evir Extreme Values in R
2012-07-26 iRegression Regression methods for interval-valued variables
2012-07-26 mbmdr Model Based Multifactor Dimensionality Reduction
2012-07-26 PlayerRatings Dynamic Updating Methods For Player Ratings Estimation
2012-07-26 rneos rneos: XML-RPC Interface to NEOS
2012-07-25 dpmixsim Dirichlet Process Mixture model simulation for clustering and image segmentation
2012-07-25 txtplot Text based plots
2012-07-24 plgp Particle Learning of Gaussian Processes
2012-07-24 relSim Relative Simulator
2012-07-23 c3net Infering large-scale gene networks with C3NET
2012-07-23 cggd Continuous Generalized Gradient Descent
2012-07-23 datamerge Merging of overlapping and inconsistent data
2012-07-23 drawExpression Visualising R syntax through graphics
2012-07-23 FindAllRoots Find all root(s) of the equation and Find root(s) of the equation by dichotomy
2012-07-23 FunCluster Functional Profiling of Microarray Expression Data
2012-07-23 geneListPie Profiling a gene list into GOslim or KEGG function pie
2012-07-23 GExMap A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data
2012-07-23 mcclust Process an MCMC Sample of Clusterings
2012-07-23 nullabor Tools for graphical inference
2012-07-23 ODB Open Document Databases (.odb) management
2012-07-23 parmigene Parallel Mutual Information estimation for Gene Network reconstruction
2012-07-23 schoolmath Functions and datasets for math used in school
2012-07-23 spa Implements The Sequential Predictions Algorithm
2012-07-22 GhcnDaily Downloads and processes GHCN daily
2012-07-20 FRACTION Numeric number into fraction
2012-07-20 obliclus Cluster-based factor rotation
2012-07-20 oro.pet Rigorous - Positron Emission Tomography
2012-07-19 xtermStyle Basic text formatting using xterm escape sequences
2012-07-18 cncaGUI Canonical Non-symmetrical Correspondence Analysis in R
2012-07-18 elmNN Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks )
2012-07-17 bspmma bspmma: Bayesian Semiparametric Models for Meta-Analysis
2012-07-16 irr Various Coefficients of Interrater Reliability and Agreement
2012-07-13 crmn CCMN and other noRMalizatioN methods for metabolomics data
2012-07-13 knnGarden Multi-distance based k-Nearest Neighbors
2012-07-13 lhs Latin Hypercube Samples
2012-07-12 CensRegMod Fitting Normal and Student-t censored regression model
2012-07-12 eVenn eVenn: A powerful tool to compare lists and draw Venn diagrams
2012-07-12 UScensus2010 US Census 2010 Suite of R Packages
2012-07-11 DeducerSurvival Add Survival Dialogue to Deducer
2012-07-11 HW.pval Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
2012-07-11 hypothesestest Confidence Intervals and Tests of Statistical Hypotheses
2012-07-11 msr Morse-Smale approximation, regression and visualization
2012-07-10 mlbench Machine Learning Benchmark Problems
2012-07-10 mvtmeta Multivariate meta-analysis
2012-07-09 extraBinomial Extra-binomial approach for pooled sequencing data
2012-07-09 SECP Statistical Estimation of Cluster Parameters (SECP)
2012-07-07 CPE Concordance Probability Estimates in Survival Analysis
2012-07-07 RaschSampler Rasch Sampler
2012-07-06 NLRoot searching for the root of equation
2012-07-06 WMDB Discriminant Analysis Methods by Weight Mahalanobis Distance and bayes
2012-07-05 ncg Computes the noncentral gamma function
2012-07-04 faisalconjoint Faisal Conjoint Model: A New Approach to Conjoint Analysis
2012-07-04 p3state.msm Analyzing survival data
2012-07-03 myepisodes MyEpisodes RSS/API functions
2012-07-02 CR Power Calculation for Weighted Log-Rank Tests in Cure Rate Models
2012-07-02 rCUR CUR decomposition package
2012-07-02 rda Shrunken Centroids Regularized Discriminant Analysis
2012-06-29 packS4 Toy example of S4 package
2012-06-28 elasticnet Elastic-Net for Sparse Estimation and Sparse PCA
2012-06-28 RAD Fit RAD models to biological data
2012-06-25 ada ada: an R package for stochastic boosting
2012-06-25 ETAS Modeling earthquake data using Epidemic Type Aftershock Sequence model
2012-06-25 gclus Clustering Graphics
2012-06-22 adaptMCMC Implementation of a generic adaptive Monte Carlo Markov Chain sampler
2012-06-22 mra Analysis of Mark-Recapture data
2012-06-22 SRPM Shared Reproducibility Package Management
2012-06-21 ezglm selects significant non-additive interaction between two variables using fast GLM implementation
2012-06-21 psy Various procedures used in psychometry
2012-06-20 batchmeans Consistent Batch Means Estimation of Monte Carlo Standard Errors
2012-06-20 Metrics Evaluation metrics for machine learning
2012-06-20 RVideoPoker Play Video Poker with R
2012-06-20 sperrorest Spatial Error Estimation and Variable Importance
2012-06-19 AMAP.Seq Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
2012-06-19 MMIX Model selection uncertainty and model mixing
2012-06-19 sparseLDA Sparse Discriminant Analysis
2012-06-18 tourrGui A Tour GUI using gWidgets
2012-06-17 crossmatch The Cross-match Test
2012-06-15 bisectr Tools to find bad commits with git bisect
2012-06-15 MLEP Maximum likelihood estimate of penetrance parameters
2012-06-14 dummies Create dummy/indicator variables flexibly and efficiently
2012-06-14 sigora SIGNATURE OVERREPRESENTATION ANALYSIS
2012-06-13 clustergas A hierarchical clustering method based on genetic algorithms
2012-06-12 paleoTS Analyze paleontological time-series
2012-06-11 caribou Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry
2012-06-11 extrafontdb Package for holding the database for the extrafont package
2012-06-09 rrlda Robust Regularized Linear Discriminant Analysis
2012-06-08 CHCN Canadian Historical Climate Network
2012-06-07 R330 An R package for Stats 330
2012-06-06 mpMap Multi-parent RIL genetic analysis
2012-06-05 bios2mds From BIOlogical Sequences to MultiDimensional Scaling
2012-06-05 qvcalc Quasi variances for factor effects in statistical models
2012-06-05 RIFS Random Iterated Function System (RIFS)
2012-06-04 MorseGen Simple raw data generator based on user-specified summary statistics
2012-06-04 Voss Generic Voss algorithm (random sequential additions)
2012-06-03 SimpleTable Bayesian Inference and Sensitivity Analysis for Causal Effects from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured Confounding
2012-06-01 BAS Bayesian Model Averaging using Bayesian Adaptive Sampling
2012-06-01 hiPOD hierarchical Pooled Optimal Design
2012-06-01 howmany A lower bound for the number of correct rejections
2012-06-01 quantregForest Quantile Regression Forests
2012-06-01 relaxo Relaxed Lasso
2012-05-31 OIdata Data sets and supplements (OpenIntro)
2012-05-30 foodweb visualisation and analysis of food web networks
2012-05-30 intpoint linear programming solver by the interior point method and graphically (two dimensions)
2012-05-30 mitools Tools for multiple imputation of missing data
2012-05-30 nortest Tests for Normality
2012-05-29 genomicper Circular Genomic Permutation using GWAS p-values of association
2012-05-28 disp2D 2D Hausdorff and Simplex Dispersion Orderings
2012-05-28 plus Penalized Linear Unbiased Selection
2012-05-26 multcompView Visualizations of Paired Comparisons
2012-05-26 OpenCL Interface allowing R to use OpenCL
2012-05-25 fgof Fast Goodness-of-fit Test
2012-05-25 Maeswrap Wrapper functions for MAESTRA/MAESPA
2012-05-24 BinNor Simultaneous generation of multivariate binary and normal variates
2012-05-24 WeightedPortTest Weighted Portmanteau Tests for Time Series Goodness-of-fit
2012-05-23 qtutils Miscellaneous Qt-based utilities
2012-05-22 iterLap Approximate probability densities by iterated Laplace Approximations
2012-05-19 irtrees Estimation of Tree-Based Item Response Models
2012-05-18 HTMLUtils Facilitates automated HTML report creation
2012-05-18 makeProject Creates an empty package framework for the LCFD format
2012-05-17 googlePublicData An R library to build Google's Public Data Explorer DSPL Metadata files
2012-05-17 msgps Degrees of freedom of elastic net, adaptive lasso and generalized elastic net
2012-05-17 QUIC Regularized sparse inverse covariance matrix estimation
2012-05-17 simSummary Simulation summary
2012-05-16 bayesm Bayesian Inference for Marketing/Micro-econometrics
2012-05-16 M3 Reading M3 files
2012-05-16 primer Functions and data for A Primer of Ecology with R
2012-05-15 bayesclust Tests/Searches for significant clusters in genetic data
2012-05-15 coxme Mixed Effects Cox Models
2012-05-15 ri ri: R package for performing randomization-based inference for experiments
2012-05-14 cumplyr Extends ddply to allow calculation of cumulative quantities
2012-05-14 cvTools Cross-validation tools for regression models
2012-05-13 SortableHTMLTables Turns a data frame into an HTML file containing a sortable table
2012-05-12 frailtyHL Frailty Models via H-likelihood
2012-05-11 dafs Data analysis for forensic scientists
2012-05-10 bigml R bindings for the BigML API
2012-05-09 plmDE Additive partially linear models for differential gene expression analysis
2012-05-08 AGD Analysis of Growth Data
2012-05-08 iCluster Integrative clustering of multiple genomic data types
2012-05-08 SunterSampling Sunter's sampling design
2012-05-07 CityPlot Visualization of structure and contents of a database
2012-05-06 clime Constrained L1-minimization for Inverse (covariance) Matrix Estimation
2012-05-05 discreteMTP Multiple testing procedures for discrete test statistics
2012-05-05 tensor Tensor product of arrays
2012-05-04 kappalab Non-additive measure and integral manipulation functions
2012-05-04 RSeed borenstein analysis
2012-05-03 CDNmoney Components of Canadian Monetary and Credit Aggregates
2012-05-03 EvalEst Dynamic Systems Estimation - extensions
2012-05-03 playitbyr Representing and exploring data through sound
2012-05-02 lassoshooting L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
2012-05-02 rscproxy statconn: provides portable C-style interface to R (StatConnector)
2012-05-02 tsne T-distributed Stochastic Neighbor Embedding for R (t-SNE)
2012-05-01 condmixt Conditional Density Estimation with Neural Network Conditional Mixtures
2012-04-30 csound Accessing Csound functionality through R
2012-04-28 GUniFrac Generalized UniFrac distances
2012-04-27 weightedKmeans Weighted KMeans Clustering
2012-04-25 superdiag R Code for Testing Markov Chain Nonconvergence
2012-04-24 geospt Spatial geostatistics; some geostatistical and radial basis functions, prediction and cross validation; design of optimal spatial sampling networks based on geostatistical modelling
2012-04-23 noia Implementation of the Natural and Orthogonal InterAction (NOIA) model
2012-04-21 labeledLoop Labeled Loop
2012-04-20 dkDNA Diffusion kernels on a set of genotypes
2012-04-20 mritc MRI tissue classification
2012-04-19 bcp A Package for Performing a Bayesian Analysis of Change Point Problems
2012-04-18 VarEff Variation of effective population size
2012-04-17 blighty United Kingdom coastlines
2012-04-17 JohnsonDistribution Johnson Distribution
2012-04-16 GeneCycle Identification of Periodically Expressed Genes
2012-04-15 GeneralizedHyperbolic The Generalized Hyperbolic Distribution
2012-04-15 mseapca Metabolite set enrichment analysis for factor loading in principal component analysis
2012-04-13 DistributionUtils Distribution Utilities
2012-04-13 LIHNPSD Poisson Subordinated Distribution
2012-04-13 scriptests Transcript-based unit tests that are easy to create and maintain
2012-04-13 track Track Objects
2012-04-13 VarianceGamma The Variance Gamma Distribution
2012-04-12 mvnormtest Normality test for multivariate variables
2012-04-12 reweight Adjustment of Survey Respondent Weights
2012-04-12 sROC Nonparametric Smooth ROC Curves for Continuous Data
2012-04-11 mmds Mixture Model Distance Sampling (mmds)
2012-04-11 waffect A package to simulate constrained phenotypes under a disease model H1
2012-04-10 aod Analysis of Overdispersed Data
2012-04-10 BayesDA Functions and Datasets for the book "Bayesian Data Analysis"
2012-04-10 cccrm CCC-RM
2012-04-10 elec.strat Functions for election audits using stratified random samples
2012-04-10 ElemStatLearn Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
2012-04-10 varbvs Variational inference for Bayesian variable selection
2012-04-09 negenes Estimating the number of essential genes in a genome
2012-04-07 gooJSON Google JSON Data Interpreter for R
2012-04-07 informR R Tools for Creating Sequence Statistics
2012-04-06 bigdata Big Data Analytics
2012-04-06 race Racing methods for the selection of the best
2012-04-05 lordif Logistic Regression Differential Item Functioning using IRT
2012-04-04 BHH2 Useful Functions for Box, Hunter and Hunter II
2012-04-04 corpora Statistics and data sets for corpus frequency data
2012-04-04 Fahrmeir Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz
2012-04-04 SenSrivastava Datasets from Sen & Srivastava
2012-04-03 changeLOS Change in LOS
2012-04-03 FinAsym Classifies implicit trading activity from market quotes and computes the probability of informed trading
2012-04-03 zipfR Statistical models for word frequency distributions
2012-04-02 apsrtable apsrtable model-output formatter for social science
2012-04-02 gldist An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution
2012-03-31 powerSurvEpi Power and sample size calculation for survival analysis of epidemiological studies
2012-03-31 RcmdrPlugin.epack Rcmdr plugin for time series
2012-03-30 fossil Palaeoecological and Palaeogeographical Analysis Tools
2012-03-30 gridDebug Debugging Grid Graphics
2012-03-30 gridGraphviz Drawing Graphs with Grid
2012-03-30 nacopula Nested Archimedean Copulas
2012-03-29 ICSNP Tools for Multivariate Nonparametrics
2012-03-28 WWGbook Functions and datasets for WWGbook
2012-03-27 gamair Data for "GAMs: An Introduction with R"
2012-03-27 GPArotation GPA Factor Rotation
2012-03-27 setRNG Set (Normal) Random Number Generator and Seed
2012-03-26 DIRECT Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
2012-03-26 FBN FISH Based Normalization and Copy Number inference of SNP microarray data
2012-03-26 mlgt Multi-Locus Geno-Typing
2012-03-24 MHadaptive General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling
2012-03-23 BSDA Basic Statistics and Data Analysis
2012-03-23 eigenmodel Semiparametric factor and regression models for symmetric relational data
2012-03-23 filehashSQLite Simple key-value database using SQLite
2012-03-23 SPA3G SPA3G: R package for the method of Li and Cui (2012)
2012-03-23 TRAMPR TRFLP Analysis and Matching Package for R
2012-03-22 ISwR Introductory Statistics with R
2012-03-22 mixlow mixlow method for assessing drug synergism
2012-03-21 lle Locally linear embedding
2012-03-21 MCAPS MCAPS data and results
2012-03-21 mvtsplot Multivariate Time Series Plot
2012-03-21 pseudo Pseudo - observations
2012-03-21 represent Determine the representativity of two multidimensional data sets
2012-03-21 stashR A Set of Tools for Administering SHared Repositories
2012-03-20 BLR Bayesian Linear Regression
2012-03-20 popbio Construction and analysis of matrix population models
2012-03-20 QuantPsyc Quantitative Psychology Tools
2012-03-19 ALS multivariate curve resolution alternating least squares (MCR-ALS)
2012-03-19 AUCRF Variable Selection with Random Forest and the Area Under the Curve
2012-03-19 merror Accuracy and Precision of Measurements
2012-03-19 mgpd mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II)
2012-03-19 nnls The Lawson-Hanson algorithm for non-negative least squares (NNLS)
2012-03-19 qp q-order partial correlation graph search algorithm
2012-03-18 LCAextend Latent Class Analysis (LCA) with familial dependence in extended pedigrees
2012-03-18 PSAgraphics Propensity Score Analysis Graphics
2012-03-17 DeducerPlugInExample Deducer Plug-in Example
2012-03-17 DeducerPlugInScaling Reliability and factor analysis plugin
2012-03-16 bmd Benchmark dose analysis for dose-response data
2012-03-16 R2wd Write MS-Word documents from R
2012-03-16 truncdist Truncated Random Variables
2012-03-15 gee Generalized Estimation Equation solver
2012-03-15 VarSwapPrice Pricing a variance swap on an equity index
2012-03-14 PKgraph Model diagnostics for population pharmacokinetic models
2012-03-14 stockPortfolio Build stock models and analyze stock portfolios
2012-03-12 cacheSweave Tools for caching Sweave computations
2012-03-12 MDR Detect gene-gene interactions using multifactor dimensionality reduction
2012-03-12 zipcode U.S. ZIP Code database for geocoding
2012-03-11 klausuR Multiple Choice Test Evaluation
2012-03-09 qLearn Estimation and inference for Q-learning
2012-03-08 eqtl Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
2012-03-07 JPSurv Methods for population-based cancer survival analysis
2012-03-07 tabuSearch R based tabu search algorithm
2012-03-06 malaria.em EM Estimation of Malaria Haplotype Probabilities from Multiply Infected Human Blood Samples
2012-03-05 soobench Single Objective Optimization Benchmark Functions
2012-03-04 AmericanCallOpt This package includes pricing function for selected American call options with underlying assets that generate payouts
2012-03-03 qtbase Interface between R and Qt
2012-03-03 qtpaint Qt-based painting infrastructure
2012-03-01 CRM Continual Reassessment Method (CRM) for Phase I Clinical Trials
2012-03-01 curvetest The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities
2012-03-01 log4r A simple logging system for R, based on log4j
2012-03-01 rBeta2009 The Beta Random Number and Dirichlet Random Vector Generating Functions
2012-02-29 benchden 28 benchmark densities from Berlinet/Devroye (1994)
2012-02-27 superpc Supervised principal components
2012-02-21 RMallow Fit Multi-Modal Mallows' Models to ranking data
2012-02-20 barcode Barcode distribution plots
2012-02-20 ops Optimal Power Space Transformation
2012-02-20 YaleToolkit Data exploration tools from Yale University
2012-02-19 perturb Tools for evaluating collinearity
2012-02-17 capushe Capushe, data-driven slope estimation and dimension jump
2012-02-17 WideLM Fitting many skinny linear models to a single data set
2012-02-16 chemometrics Multivariate Statistical Analysis in Chemometrics
2012-02-15 gamlss.nl Fitting non linear parametric GAMLSS models
2012-02-13 dispmod Dispersion models
2012-02-11 fume FUME package
2012-02-11 idbg R debugger
2012-02-10 pairheatmap A tool for comparing heatmaps
2012-02-08 genridge Generalized ridge trace plots for ridge regression
2012-02-08 readMLData Reading machine learning benchmark data sets from different sources in their original format
2012-02-07 udunits2 udunits-2 bindings for R
2012-02-06 futile.paradigm A framework for working in a functional programming paradigm in R
2012-02-06 rdatamarket Data access API for DataMarket.com
2012-02-05 SCperf Supply Chain Perform
2012-02-03 lmbc Linear Model Bias Correction for RNA-Seq Data
2012-02-02 DiscreteLaplace Discrete Laplace distribution
2012-02-02 neuRosim Functions to generate fMRI data including activated data, noise data and resting state data
2012-02-02 rlecuyer R interface to RNG with multiple streams
2012-01-31 bayesMCClust Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering
2012-01-31 rstream Streams of random numbers
2012-01-31 vacem Vaccination Activities Coverage Estimation Model
2012-01-30 Rwinsteps Running Winsteps in R
2012-01-30 semdiag Structural equation modeling diagnostics
2012-01-28 geotools Geo tools
2012-01-28 tlmec Linear Student-t Mixed-Effects Models with Censored Data
2012-01-27 MIPHENO Mutant Identification through Probabilistic High throughput Enabled NOrmalization
2012-01-24 CALINE3 R interface to Fortran 77 implementation of CALINE3
2012-01-24 moments Moments, cumulants, skewness, kurtosis and related tests
2012-01-24 occ Estimates PET neuroreceptor occupancies
2012-01-24 registry Registry infrastructure
2012-01-23 rasclass Supervised Raster Image Classification
2012-01-22 SEER2R reading and writing SEER*STAT data files
2012-01-21 fastmatch Fast match() function
2012-01-20 apple Approximate Path for Penalized Likelihood Estimators
2012-01-18 cytoDiv Cytometric diversity indices
2012-01-17 ifa Independent Factor Analysis
2012-01-17 RMySQL R interface to the MySQL database
2012-01-17 rngwell19937 WELL19937a random number generator implemented with 53 bit output
2012-01-16 DBGSA methods of distance-based gene set functional enrichment analysis
2012-01-15 GillespieSSA Gillespie's Stochastic Simulation Algorithm (SSA)
2012-01-15 Lmoments L-moments and quantile mixtures
2012-01-15 PKPDmodels Pharmacokinetic/pharmacodynamic models
2012-01-14 cepp Context Driven Exploratory Projection Pursuit
2012-01-13 eiPack eiPack: Ecological Inference and Higher-Dimension Data Management
2012-01-13 lga Tools for linear grouping analysis (LGA)
2012-01-13 pgam Poisson-Gamma Additive Models
2012-01-13 randaes Random number generator based on AES cipher
2012-01-12 intReg Interval Regression
2012-01-12 lisp List-processing à la SRFI-1
2012-01-12 rstiefel Random orthonormal matrix generation on the Stiefel manifold
2012-01-09 wccsom SOM networks for comparing patterns with peak shifts
2012-01-07 events Store and manipulate event data
2012-01-07 latticeDensity Density estimation and nonparametric regression on irregular regions
2012-01-07 ucminf General-purpose unconstrained non-linear optimization
2012-01-06 rportfolios Random portfolio generation
2012-01-05 hett Heteroscedastic t-regression
2012-01-05 MImix Mixture summary method for multiple imputation
2012-01-04 mcbiopi Matrix Computation Based Identification Of Prime Implicants
2012-01-03 AWS.tools R package to use Amazon Web Services
2012-01-03 GOGANPA GO-Functional-Network-based Gene-Set-Analysis
2012-01-03 rpsychi Statistics for psychiatric research
2011-12-30 cin Causal Inference for Neuroscience
2011-12-30 fame Interface for FAME time series database
2011-12-30 wasim Visualisation and analysis of output files of the hydrological model WASIM
2011-12-28 ADGofTest Anderson-Darling GoF test
2011-12-28 biglars Scalable Least-Angle Regression and Lasso
2011-12-27 onion octonions and quaternions
2011-12-23 curvHDR curvHDR filtering of flow cytometry samples
2011-12-23 ktspair k-Top Scoring Pairs for Microarray Classification
2011-12-21 kriging Ordinary Kriging
2011-12-20 nFactors Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test
2011-12-19 Holidays Holiday and halfday data, for use with the TimeWarp package
2011-12-16 DECIDE DEComposition of Indirect and Direct Effects
2011-12-16 spaceExt Extension of SPACE
2011-12-15 ascrda Augmented SCRDA
2011-12-13 objectProperties A factory of self-describing properties
2011-12-11 EMC Evolutionary Monte Carlo (EMC) algorithm
2011-12-11 EMCC Evolutionary Monte Carlo (EMC) methods for clustering
2011-12-11 SMC Sequential Monte Carlo (SMC) Algorithm
2011-12-09 PairViz Visualization using Eulerian tours and Hamiltonian decompositions
2011-12-08 bamdit Bayesian Meta-Analysis of diagnostic test data
2011-12-08 ThresholdROC Optimum threshold estimation based on cost function in a two and three state setting
2011-12-03 base64 Base 64 encoder/decoder
2011-12-02 supclust Supervised Clustering of Predictor Variables such as Genes
2011-12-01 OrdMonReg Compute least squares estimates of one bounded or two ordered isotonic regression curves
2011-11-30 plugdensity Plug-in Kernel Density Estimation
2011-11-29 modehunt Multiscale Analysis for Density Functions
2011-11-29 qtlbook Datasets for the R/qtl book
2011-11-28 dse1 DSE (unbundled transition package)
2011-11-28 dse2 DSE (unbundled transition package)
2011-11-27 abind Combine multi-dimensional arrays
2011-11-27 RSVGTipsDevice An R SVG graphics device with dynamic tips and hyperlinks
2011-11-27 tkrgl TK widget tools for rgl package
2011-11-25 mpm Multivariate Projection Methods
2011-11-24 WMCapacity GUI implementing Bayesian working memory models
2011-11-22 Survgini The Gini concentration test for survival data
2011-11-21 migui Graphical User Interface of the mi Package
2011-11-19 ProfileLikelihood Profile Likelihood for a Parameter in Commonly Used Statistical Models
2011-11-19 tkrplot TK Rplot
2011-11-17 liso Fitting lasso penalised additive isotone models
2011-11-16 PhysicalActivity Process Physical Activity Accelerometer Data
2011-11-16 SynergizeR Interface to The Synergizer service for translating between sets of biological identifiers
2011-11-16 SyNet Inference and Analysis of Sympatry Networks
2011-11-13 itsmr Time series analysis package for students
2011-11-13 mvProbit Multivariate Probit Models
2011-11-10 recommenderlabBX Book-Crossing Dataset (BX) for recommenderlab
2011-11-10 recommenderlabJester Jester Dataset for recommenderlab
2011-11-07 MAINT.Data Model and Analize Interval Data
2011-11-07 RArcInfo Functions to import data from Arc/Info V7.x binary coverages
2011-11-04 cmrutils Misc Functions of the Center for the Mathematical Research
2011-11-04 NPsimex Nonparametric Smoothing for contaminated data using Simulation-Extrapolation
2011-11-03 LSD Lots of Superior Depictions
2011-11-03 mail Sending Email Notifications from R
2011-11-02 EL Two-sample Empirical Likelihood
2011-11-02 nlrwr Nonlinear regression with R
2011-11-02 rationalfun Manipulation of Rational Functions
2011-10-28 objectSignals objectSignals
2011-10-27 alr3 Data to accompany Applied Linear Regression 3rd edition
2011-10-26 emma Evolutionary model-based multiresponse approach
2011-10-23 AnnotLists AnnotLists: A tool to annotate multiple lists from a specific annotation file
2011-10-23 webvis Create graphics for the web from R
2011-10-20 lspls LS-PLS Models
2011-10-20 MultEq Multiple Equivalence Tests and Simultaneous Confidence Intervals
2011-10-17 relimp Relative Contribution of Effects in a Regression Model
2011-10-10 RJaCGH Reversible Jump MCMC for the analysis of CGH arrays
2011-10-04 remix Remix your data
2011-10-01 weightedScores Weighted scores method for regression with dependent data
2011-09-30 dhglm Double Hierarchical Generalized Linear Models
2011-09-29 ascii Export R objects to several markup languages
2011-09-29 stremo Functions to help the process of learning structural equation modelling
2011-09-10 McParre Run a Regenerative Markov chain in Parallel on a Cluster
2011-09-10 NBDdirichlet NBD-Dirichlet model of consumer buying behavior for marketing research
2011-09-08 mseq Modeling non-uniformity in short-read rates in RNA-Seq data
2011-09-07 ISOweek Week of the year and weekday according to ISO 8601
2011-09-02 fork R functions for handling multiple processes
2011-08-30 rJavax rJava extensions
2011-08-28 viopoints 1-D Scatter Plots with Jitter Using Kernel Density Estimates
2011-08-18 ieeeround Functions to set and get the IEEE rounding mode
2011-08-17 features Feature Extraction for Discretely-Sampled Functional Data
2011-08-14 RcmdrPlugin.doex Rcmdr plugin for Stat 4309 course
2011-08-12 CITAN CITation ANalysis toolpack
2011-08-12 dfoptim Derivative-free Optimization
2011-08-12 fun Use R for Fun
2011-08-12 hybridHclust Hybrid hierarchical clustering
2011-08-12 MCMChybridGP Hybrid Markov chain Monte Carlo using Gaussian Processes
2011-08-10 venneuler Venn and Euler Diagrams
2011-08-09 binomTools Performing diagnostics on binomial regression models
2011-08-08 lmmfit Goodness-of-fit-measures for linear mixed models with one-level-grouping
2011-08-08 mxkssd Efficient mixed-level k-circulant supersaturated designs
2011-08-08 REEMtree Regression Trees with Random Effects for Longitudinal (Panel) Data
2011-08-06 LargeRegression Large Regressions
2011-08-05 DAGGER Consensus genetic maps
2011-08-05 mkssd Efficient multi-level k-circulant supersaturated designs
2011-08-04 SPIAssay A genetic-based assay for the identification of cell lines
2011-07-28 dae Functions useful in the design and ANOVA of experiments
2011-07-28 r2lh R to LaTeX and HTML
2011-07-28 soma General-purpose optimisation with the Self-Organising Migrating Algorithm
2011-07-27 fwdmsa Forward search for Mokken scale analysis
2011-07-25 plink IRT Separate Calibration Linking Methods
2011-07-23 CLSOCP A smoothing Newton method SOCP solver
2011-07-23 minimax Minimax distribution family
2011-07-23 s4vd Biclustering via sparse singular value decomposition incorporating stability selection
2011-07-19 pixmap Bitmap Images (“Pixel Maps”)
2011-07-18 B2Z Bayesian Two-Zone Model
2011-07-18 MNM Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
2011-07-06 GPseq gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
2011-07-06 limitplot Jitter/CI Plot with Ordered Points Below the Limit of Detection
2011-06-29 enrichvs Enrichment assessment of virtual screening approaches
2011-06-29 samr SAM: Significance Analysis of Microarrays
2011-06-17 LGS simulating Linkage Group Selection (LGS)
2011-06-17 RColorBrewer ColorBrewer palettes
2011-06-15 longmemo Statistics for Long-Memory Processes (Jan Beran) – Data and Functions
2011-06-15 MetaPCA MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data
2011-06-03 orthogonalsplinebasis Orthogonal Bspline Basis Functions
2011-05-31 reshapeGUI A GUI for the reshape2 and plyr packages
2011-05-29 GANPA Gene Association Network-based Pathway Analysis
2011-05-26 gtcorr Calculate efficiencies of group testing algorithms with correlated responses
2011-05-18 Kendall Kendall rank correlation and Mann-Kendall trend test
2011-05-18 pear Package for Periodic Autoregression Analysis
2011-05-17 gcExplorer Graphical Cluster Explorer
2011-05-11 COMPoissonReg Conway-Maxwell Poisson (COM-Poisson) Regression
2011-05-02 phyext An extension of some of the classes in phylobase. Tree objects now support subnodes on branches
2011-04-26 cobs COBS – Constrained B-splines (Sparse matrix based)
2011-04-26 MAPLES Smoothed age profile estimation
2011-04-24 fftw Fast FFT and DCT based on FFTW
2011-04-24 SPECIES Statistical package for species richness estimation
2011-04-15 lmmlasso Linear mixed-effects models with Lasso
2011-04-13 brew Templating Framework for Report Generation
2011-04-13 mrdrc Model-robust concentration-response analysis
2011-04-13 pvclust Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
2011-04-09 NRAIA Data sets from "Nonlinear Regression Analysis and Its Applications"
2011-04-06 lcda Latent Class Discriminant Analysis
2011-03-29 penalizedLDA Penalized classification using Fisher's linear discriminant
2011-03-26 BaBooN Bayesian Bootstrap Predictive Mean Matching - Multiple and single imputation for discrete data
2011-03-26 qualV Qualitative Validation Methods
2011-03-21 metacor Meta-analysis of correlation coefficients
2011-03-09 compeir Event-specific incidence rates for competing risks data
2011-02-24 fpca Restricted MLE for Functional Principal Components Analysis
2011-02-23 locfdr Computes local false discovery rates
2011-02-22 MUCflights Munich Franz-Josef-Strauss Airport Pattern Analysis
2011-02-21 beadarrayMSV Analysis of Illumina BeadArray SNP data including MSV markers
2011-02-18 Meth27QC Meth27QC: sample quality analysis, and sample control analysis
2011-02-11 MMST DATASETS FROM MMST
2011-02-11 PoMoS Polynomial (ordinary differential equation) Model Search
2011-01-29 cmaes Covariance Matrix Adapting Evolutionary Strategy
2011-01-26 MAT Multidimensional Adaptive Testing (MAT)
2011-01-24 outliers Tests for outliers
2011-01-23 multxpert Common Multiple Testing Procedures and Gatekeeping Procedures
2011-01-20 darts Statistical Tools to Analyze Your Darts Game
2011-01-15 esotericR esotericR articles from lemnica.com
2011-01-13 SVMMaj SVMMaj algorithm
2011-01-11 scout Implements the Scout method for Covariance-Regularized Regression
2011-01-11 topmodel Implementation of the hydrological model TOPMODEL in R
2011-01-03 english Translate integers into English
2011-01-03 extremevalues Univariate outlier detection
2011-01-03 factualR thin wrapper for the Factual.com server API
2011-01-03 neariso Near-Isotonic Regression
2011-01-03 reliaR Package for some probability distributions
2010-12-16 orQA Order Restricted Assessment Of Microarray Titration Experiments
2010-12-06 dcv Conventional Cross-validation statistics for climate-growth model
2010-12-01 tensorA Advanced tensors arithmetic with named indices
2010-11-08 RMC Functions for fitting Markov models
2010-11-03 aster2 Aster Models
2010-10-28 varSelRF Variable selection using random forests
2010-10-27 inference Functions to extract inferential values of a fitted model object
2010-10-26 RunuranGUI A GUI for the UNU.RAN random variate generators
2010-10-20 fANCOVA Nonparametric Analysis of Covariance
2010-10-04 rocc ROC based classification
2010-10-01 genepi Genetic Epidemiology Design and Inference
2010-09-29 factorQR Bayesian quantile regression factor models
2010-09-17 laercio Duncan test, Tukey test and Scott-Knott test
2010-09-15 rpud R functions for computation on GPU
2010-09-09 SE.IGE Standard errors of estimated genetic parametes
2010-09-02 SMCP Smoothed minimax concave penalization (SMCP) method for genome-wide association studies
2010-08-25 ecoreg Ecological regression using aggregate and individual data
2010-08-23 PET Simulation and Reconstruction of PET Images
2010-08-11 classGraph Construct Graphs of S4 Class Hierarchies
2010-08-08 psychometric Applied Psychometric Theory
2010-08-06 hexView Viewing Binary Files
2010-07-31 MVpower Give power for a given effect size using multivariate classification methods
2010-07-30 FieldSim Random fields simulations
2010-07-29 EnQuireR A package dedicated to questionnaires
2010-07-29 perm Exact or Asymptotic permutation tests
2010-07-26 stepPlr L2 penalized logistic regression with a stepwise variable selection
2010-07-24 MCPMod Design and Analysis of Dose-Finding Studies (see also DoseFinding package)
2010-07-24 PolynomF Polynomials in R
2010-07-07 mlmmm ML estimation under multivariate linear mixed models with missing values
2010-07-01 someKfwer Controlling the Generalized Familywise Error Rate
2010-06-25 RNCBIEUtilsLibs EUtils libraries for use in the R environment
2010-06-20 ttutils Utility functions
2010-05-30 RSQLite.extfuns Math and String Extension Functions for RSQLite
2010-05-23 SEL Semiparametric elicitation
2010-05-22 rrules Generic rule engine for R
2010-05-07 cgh Microarray CGH analysis using the Smith-Waterman algorithm
2010-05-07 imprProbEst Minimum distance estimation in an imprecise probability model
2010-05-01 ProDenICA Product Density Estimation for ICA using tilted Gaussian density estimates
2010-04-25 BMN The pseudo-likelihood method for pairwise binary markov networks
2010-04-14 identity Jacquard Condensed Coefficients of Identity
2010-04-14 space Sparse PArtial Correlation Estimation
2010-04-13 nws R functions for NetWorkSpaces and Sleigh
2010-04-12 tpr Temporal Process Regression
2010-04-07 som Self-Organizing Map
2010-04-06 futile.options Futile options management
2010-04-05 AIM AIM: adaptive index model
2010-04-03 polycor Polychoric and Polyserial Correlations
2010-04-02 endogMNP R Package for Fitting Multinomial Probit Models with Endogenous Selection
2010-04-02 pmlr Penalized Multinomial Logistic Regression
2010-03-16 haarfisz Software to perform Haar Fisz transforms
2010-03-09 rsprng R interface to SPRNG (Scalable Parallel Random Number Generators)
2010-03-08 far Modelization for Functional AutoRegressive processes
2010-02-16 ic50 Standardized high-throughput evaluation of cell-based compound screens
2010-02-11 CausalGAM Estimation of Causal Effects with Generalized Additive Models
2010-02-07 stam Spatio-Temporal Analysis and Modelling
2010-02-03 GWRM GWRM
2010-02-03 scrapeR Tools for Scraping Data from HTML and XML Documents
2010-02-01 dynamicGraph dynamicGraph
2010-01-28 fisheyeR Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
2010-01-26 BoSSA a Bunch of Structure and Sequence Analysis
2010-01-20 nnclust Nearest-neighbour tools for clustering
2010-01-13 blockmodeling An R package for Generalized and classical blockmodeling of valued networks
2010-01-10 HMM HMM - Hidden Markov Models
2010-01-04 GSA Gene set analysis
2010-01-03 mix Estimation/multiple Imputation for Mixed Categorical and Continuous Data
2009-12-24 histogram Construction of regular and irregular histograms with different options for automatic choice of bins
2009-12-17 jointDiag Joint Approximate Diagonalization of a set of square matrices
2009-12-17 SampleSizeProportions Calculating sample size requirements when estimating the difference between two binomial proportions
2009-12-16 marginalmodelplots Marginal Mean Model Plots
2009-12-03 datamap A system for mapping foreign objects to R variables and environments
2009-11-25 LogitNet Infer network based on binary arrays using regularized logistic regression
2009-11-22 dvfBm Discrete variations of a fractional Brownian motion
2009-11-17 DRI DR-Integrator
2009-11-13 corcounts Generate correlated count random variables
2009-10-27 rela Item Analysis Package with Standard Errors
2009-10-16 adaptTest Adaptive two-stage tests
2009-10-15 bcv Cross-Validation for the SVD (Bi-Cross-Validation)
2009-10-14 RMTstat Distributions, Statistics and Tests derived from Random Matrix Theory
2009-10-12 grouped Regression Analysis of Grouped and Coarse Data
2009-10-11 moduleColor Basic module functions
2009-10-11 packClassic Toy example of Pack Classic
2009-10-08 PKtools unified computational interfaces for pop PK
2009-09-28 EQL Extended-Quasi-Likelihood-Function (EQL)
2009-09-23 HyperbolicDist The hyperbolic distribution
2009-09-06 its Irregular Time Series
2009-08-30 km.ci Confidence intervals for the Kaplan-Meier estimator
2009-08-08 crantastic Various R tools for http://crantastic.org/
2009-08-02 latdiag Draws diagrams useful for checking latent scales
2009-06-29 PearsonICA Independent component analysis using score functions from the Pearson system
2009-06-29 spatcounts Spatial count regression
2009-06-14 svcm 2d and 3d Space-Varying Coefficient Models
2009-06-08 HybridMC Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
2009-06-07 cghFLasso Detecting hot spot on CGH array data with fused lasso regression
2009-06-04 bootStepAIC Bootstrap stepAIC
2009-05-18 odfWeave.survey Support for odfWeave on the survey package
2009-05-05 leaps regression subset selection
2009-05-05 luca Likelihood inference from case-control data Under Covariate Assumptions (LUCA)
2009-05-05 SEMModComp Model Comparisons for SEM
2009-04-28 mcsm Functions for Monte Carlo Methods with R
2009-04-15 uniCox Univarate shrinkage prediction in the Cox model
2009-03-24 ars Adaptive Rejection Sampling
2009-03-23 plotpc Plot principal component histograms around a scatter plot
2009-03-01 clusterRepro Reproducibility of gene expression clusters
2009-02-25 hdeco Hierarchical DECOmposition of Entropy for Categorical Map Comparisons
2009-02-25 sac Semiparametric Analysis of Changepoint
2009-02-24 spe Stochastic Proximity Embedding
2009-02-01 CreditMetrics Functions for calculating the CreditMetrics risk model
2009-02-01 Reliability Functions for estimating parameters in software reliability models
2009-01-30 ETC Equivalence to control
2009-01-29 convexHaz Nonparametric MLE/LSE of convex hazard
2009-01-29 kin.cohort Analysis of kin-cohort studies
2009-01-17 remMap Regularized Multivariate Regression for Identifying Master Predictors
2008-12-16 mixPHM Mixtures of proportional hazard models
2008-11-08 foba greedy variable selection
2008-10-28 kzs Kolmogorov-Zurbenko Spatial Smoothing and Applications
2008-10-02 expert Modeling without data using expert opinion
2008-09-28 goalprog Weighted and lexicographical goal programming and optimization
2008-09-08 pack Convert values to/from raw vectors
2008-09-06 dice Calculate probabilities of various dice-rolling events
2008-09-03 hlr Hidden Logistic Regression
2008-08-13 RM2 Revenue Management and Pricing Package
2008-07-16 bark Bayesian Additive Regresssion Kernels
2008-06-23 SASPECT Significant AnalysiS of PEptide CounTs
2008-06-09 LDtests Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
2008-05-02 boa Bayesian Output Analysis Program (BOA) for MCMC
2008-05-02 simpleboot Simple Bootstrap Routines
2008-04-29 poilog Poisson lognormal and bivariate Poisson lognormal distribution
2007-11-06 mFilter Miscellaneous time series filters
2007-10-16 fuzzyFDR Exact calculation of fuzzy decision rules for multiple testing
2007-08-26 Defaults Create Global Function Defaults
2006-08-19 powell Powell's UObyQA algorithm
2006-05-24 allelic A fast, unbiased and exact allelic exact test
2006-03-30 BayesValidate BayesValidate Package
2006-03-15 coxrobust Robust Estimation in Cox Model
2005-10-29 vioplot Violin plot