TE: Insertion/Deletion Dynamics for Transposable Elements

Provides functions to estimate the insertion and deletion rates of transposable element (TE) families. The estimation of insertion rate consists of an improved estimate of the age distribution that takes into account random mutations, and an adjustment by the deletion rate. A hypothesis test for a uniform insertion rate is also implemented. This package implements the methods proposed in Dai et al (2018).

Version: 0.1-1
Depends: R (≥ 2.10)
Imports: MASS, rainbow
Published: 2018-01-16
Author: Xiongtao Dai [aut, cre, cph], Hao Wang [aut], Jan Dvorak [ctb], Jeffrey Bennetzen [ctb], Hans-Georg Mueller [ctb]
Maintainer: Xiongtao Dai <dai at ucdavis.edu>
License: MIT + file LICENSE
NeedsCompilation: no
CRAN checks: TE results


Reference manual: TE.pdf
Package source: TE_0.1-1.tar.gz
Windows binaries: r-devel: TE_0.1-1.zip, r-release: TE_0.1-1.zip, r-oldrel: TE_0.1-1.zip
OS X El Capitan binaries: r-release: TE_0.1-1.tgz
OS X Mavericks binaries: r-oldrel: not available


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