SNPknock: Knockoffs for Hidden Markov Models and Genomic Data

Generates knockoff variables from discrete Markov chains and hidden Markov models, with specific support for genomic data. For more information, see the website below and the accompanying paper: Sesia et al., "Gene Hunting with Knockoffs for Hidden Markov Models", 2017, <arXiv:1706.04677>.

Version: 0.5.1
Depends: R (≥ 3.3.0)
Imports: Rcpp (≥ 0.12.13)
LinkingTo: Rcpp
Suggests: knitr, testthat
Published: 2018-01-09
Author: Matteo Sesia
Maintainer: Matteo Sesia <msesia at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Materials: NEWS
CRAN checks: SNPknock results


Reference manual: SNPknock.pdf
Vignettes: Using SNPknock in R
Using SNPknock with Genotype Data
Package source: SNPknock_0.5.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: SNPknock_0.5.1.tgz, r-oldrel: SNPknock_0.5.1.tgz
Old sources: SNPknock archive


Please use the canonical form to link to this page.