R packge for simulating biological sequence evolution CRAN Task View: Phylogenetics (http://CRAN.R-project.org/view=Phylogenetics) PhyloSim is an extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions. Software Depends: R (>= 2.8.0), R.oo (>= 1.4.6), ape (>= 2.3), compoisson (>= 0.3), ggplot2 (>= 0.9) Imports: ape, R.oo, compoisson, ggplot2 Suggests: multicore Botond Sipos <sbotond@ebi.ac.uk> Botond Sipos <sbotond@ebi.ac.uk>, Gregory Jordan <greg@ebi.ac.uk> GPL (>= 3) 2012-03-01 application/tgz http://CRAN.R-project.org/package=phylosim