* using log directory 'd:/Rcompile/CRANpkg/local/2.9/PHYLOGR.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* checking for file 'PHYLOGR/DESCRIPTION' ... OK
* this is package 'PHYLOGR' version '1.0.6'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PHYLOGR' can be installed ... WARNING
Found the following significant warnings:
  Warning: unmatched right brace in file 'Lacertid.IC.Rd' on line 22
  Warning: unmatched right brace in file 'Lacertid.IC.Rd' on line 22
  Warning: unmatched right brace in file 'Lacertid.Original.Rd' on line 28
  Warning: unmatched right brace in file 'Lacertid.Original.Rd' on line 28
  Warning: unmatched right brace in file 'Lacertid.varcov.Rd' on line 20
  Warning: unmatched right brace in file 'Lacertid.varcov.Rd' on line 20
  Warning: unmatched right brace in file 'SimulExample.Rd' on line 10
  Warning: unmatched right brace in file 'SimulExample.Rd' on line 34
  Warning: unmatched right brace in file 'SimulExample.Rd' on line 10
  Warning: unmatched right brace in file 'SimulExample.Rd' on line 34
  Warning: invalid whitespace before brace in file 'print.summary.phylog.Rd' at '\item{x} { an object of the appropriate class.}'
  Warning: invalid whitespace before brace in file 'print.summary.phylog.Rd' at '\item{x} { an object of the appropriate class.}'
  Warning: invalid whitespace before brace in file 'summary.phylog.cancor.Rd' at ' \item{original.LR.statistic} {the likelihood ratio statistic for the test that all canonical correlations are zero}'
  Warning: invalid whitespace before brace in file 'summary.phylog.cancor.Rd' at ' \item{p.value.overall.test} {the p-value for the test that all canonical correlations are zero}'
  Warning: invalid whitespace before brace in file 'summary.phylog.cancor.Rd' at ' \item{original.LR.statistic} {the likelihood ratio statistic for the test that all canonical correlations are zero}'
  Warning: invalid whitespace before brace in file 'summary.phylog.cancor.Rd' at ' \item{p.value.overall.test} {the p-value for the test that all canonical correlations are zero}'
See 'd:/Rcompile/CRANpkg/local/2.9/PHYLOGR.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
lm.phylog: no visible binding for global variable 'sim.counter'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... WARNING
*** error on file ./man/Lacertid.IC.Rd
Error in parse_Rd("./man/Lacertid.IC.Rd", encoding = "unknown") : 
  ./man/Lacertid.IC.Rd:22:1: unexpected '}'
21:   comparative study. \emph{The American Naturalist}, \bold{149}, 91-11}
22: }
    ^

*** error on file ./man/Lacertid.Original.Rd
Error in parse_Rd("./man/Lacertid.Original.Rd", encoding = "unknown") : 
  ./man/Lacertid.Original.Rd:28:1: unexpected '}'
27:   comparative study. \emph{The American Naturalist}, \bold{149}, 91-11}
28: }
    ^

*** error on file ./man/Lacertid.varcov.Rd
Error in parse_Rd("./man/Lacertid.varcov.Rd", encoding = "unknown") : 
  ./man/Lacertid.varcov.Rd:20:1: unexpected '}'
19:   comparative study. \emph{The American Naturalist}, \bold{149}, 91-11}
20: }
    ^

*** error on file ./man/SimulExample.Rd
Error in parse_Rd("./man/SimulExample.Rd", encoding = "unknown") : 
  ./man/SimulExample.Rd:10:1: unexpected '}'
9:   nothing to do with lacertids (or, for that matter, with any other creatures).}
10: }
    ^

Warning in parse_Rd("./man/print.summary.phylog.Rd", encoding = "unknown") :
  bad markup (extra space?) at print.summary.phylog.Rd:19:11
Warning: ./man/print.summary.phylog.Rd:19: Unnecessary braces at '{ an object of the appropriate class.}'
Warning in parse_Rd("./man/summary.phylog.cancor.Rd", encoding = "unknown") :
  bad markup (extra space?) at summary.phylog.cancor.Rd:58:31
Warning in parse_Rd("./man/summary.phylog.cancor.Rd", encoding = "unknown") :
  bad markup (extra space?) at summary.phylog.cancor.Rd:62:30
Warning: ./man/summary.phylog.cancor.Rd:58-59: Unnecessary braces at '{the likelihood ratio statistic for the
    test that all canonical correlations are zero}'
Warning: ./man/summary.phylog.cancor.Rd:62-63: Unnecessary braces at '{the p-value for the test that all
    canonical correlations are zero}'
problems found in 'Lacertid.IC.Rd', 'Lacertid.Original.Rd', 'Lacertid.varcov.Rd', 'SimulExample.Rd'
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK