* using log directory 'd:/Rcompile/CRANpkg/local/2.15/ISwR.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'ISwR/DESCRIPTION' ... OK * this is package 'ISwR' version '2.0-6' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'ISwR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'allexercises.R' Comparing 'allexercises.Rout' to 'allexercises.Rout.save' ...26c26 < NA's :5 NA's :11 NA's :5 NA's :119 NA's :66 --- > NA's : 5.000 NA's :11.000 NA's :5 NA's :119.0 NA's :66.000 214c214 < W = 0.9687, p-value = 1.376e-06 --- > W = 0.9687, p-value = 1.377e-06 724c724 < 60-64:4 Hist.ctr. :6 Median :104.0 Median : 169261 --- > 60-64:4 Hist.ctr. :6 Median :104.0 Median : 169260 1035c1035 < id 15 51138 70816 252.47 2.4254 0.05287 . --- > id 15 51137 70816 252.47 2.4254 0.05287 . 1045c1045 < id 15 51138 3409.2 2.4254 0.05287 . --- > id 15 51137 3409.2 2.4254 0.05287 . 1109c1109 < -1.72917 -0.22917 -0.08333 0.23438 2.41667 --- > -1.72917 -0.22917 -0.08333 0.23437 2.41667 2164c2164 < alpha 180.77123 1.93392 93.474 < 2e-16 *** --- > alpha 180.77122 1.93392 93.474 < 2e-16 *** 2167c2167 < da 62.03693 11.26005 5.509 4.46e-08 *** --- > da 62.03692 11.26004 5.509 4.46e-08 *** 2176c2176 < Achieved convergence tolerance: 1.666e-06 --- > Achieved convergence tolerance: 2.166e-06 2213c2213 < ec50 0.03655499 1.3770101 --- > ec50 0.03655498 1.3770101 2223c2223 < ec50 0.05332677 1.377884 --- > ec50 0.05332676 1.377884 2237c2237 < la -0.02688 0.42805 -0.063 0.95196 --- > la -0.02689 0.42805 -0.063 0.95196 Running 'allscripts.R' Comparing 'allscripts.Rout' to 'allscripts.Rout.save' ...486c486 < [1] 171 --- > [1] 170 518c518 < [1] "d:/temp/RtmpEFEcBN/RLIBS_105863b43483/ISwR/rawdata/thuesen.txt" --- > [1] "/Users/pd/BIOSTAT/books/ISWR-2nd-ed/ISwR.Rcheck/ISwR/rawdata/thuesen.txt" 604c604 < 25.0 202.2 313.5 340.2 462.8 915.0 321 --- > 25.0 202.2 313.5 340.2 462.8 915.0 321.0 606,621c606,621 < age menarche sex igf1 < Min. : 0.170 Min. :1.000 Min. :1.000 Min. : 25.0 < 1st Qu.: 9.053 1st Qu.:1.000 1st Qu.:1.000 1st Qu.:202.2 < Median :12.560 Median :1.000 Median :2.000 Median :313.5 < Mean :15.095 Mean :1.476 Mean :1.534 Mean :340.2 < 3rd Qu.:16.855 3rd Qu.:2.000 3rd Qu.:2.000 3rd Qu.:462.8 < Max. :83.000 Max. :2.000 Max. :2.000 Max. :915.0 < NA's :5 NA's :635 NA's :5 NA's :321 < tanner testvol < Min. :1.00 Min. : 1.000 < 1st Qu.:1.00 1st Qu.: 1.000 < Median :2.00 Median : 3.000 < Mean :2.64 Mean : 7.896 < 3rd Qu.:5.00 3rd Qu.:15.000 < Max. :5.00 Max. :30.000 < NA's :240 NA's :859 --- > age menarche sex > Min. : 0.170 Min. : 1.000 Min. :1.000 > 1st Qu.: 9.053 1st Qu.: 1.000 1st Qu.:1.000 > Median :12.560 Median : 1.000 Median :2.000 > Mean :15.095 Mean : 1.476 Mean :1.534 > 3rd Qu.:16.855 3rd Qu.: 2.000 3rd Qu.:2.000 > Max. :83.000 Max. : 2.000 Max. :2.000 > NA's : 5.000 NA's :635.000 NA's :5.000 > igf1 tanner testvol > Min. : 25.0 Min. : 1.00 Min. : 1.000 > 1st Qu.:202.2 1st Qu.: 1.00 1st Qu.: 1.000 > Median :313.5 Median : 2.00 Median : 3.000 > Mean :340.2 Mean : 2.64 Mean : 7.896 > 3rd Qu.:462.8 3rd Qu.: 5.00 3rd Qu.: 15.000 > Max. :915.0 Max. : 5.00 Max. : 30.000 > NA's :321.0 NA's :240.00 NA's :859.000 636c636 < NA's :5 NA's :321 --- > NA's : 5.000 NA's :321.0 644c644 < NA's :859 --- > NA's :859.000 705c705 < NA's :145 --- > NA's :145.0 713c713 < NA's :141 --- > NA's :141.000 723c723 < NA's :176 --- > NA's :176.0 1366c1366 < (Intercept) 316.63 16.16 19.588 4.65e-14 *** --- > (Intercept) 316.62 16.16 19.588 4.65e-14 *** 1368c1368 < ventilationO2,24h -38.63 26.06 -1.482 0.1548 --- > ventilationO2,24h -38.62 26.06 -1.482 0.1548 1813,1814c1813,1814 < Max. NA's < "1996-02-22" "338" --- > Max. > "1996-02-22" 2842c2842 < Mean :1.373 Mean :164326 Mean :23.00 --- > Mean :1.373 Mean :164325 Mean :23.00 2851c2851 < Mean :164326 Mean :23.00 --- > Mean :164325 Mean :23.00 4171c4171 < Achieved convergence tolerance: 1.08e-08 --- > Achieved convergence tolerance: 1.199e-08 4208c4208 < Achieved convergence tolerance: 5.281e-06 --- > Achieved convergence tolerance: 5.27e-06 4224c4224 < alpha 255.97696 15.03921 17.021 <2e-16 *** --- > alpha 255.97694 15.03920 17.021 <2e-16 *** 4233c4233 < Achieved convergence tolerance: 2.794e-06 --- > Achieved convergence tolerance: 2.948e-06 4278c4278 < Achieved convergence tolerance: 5.533e-06 --- > Achieved convergence tolerance: 5.472e-06 4287c4287 < alpha 233.5007561 294.76267646 --- > alpha 233.5007561 294.76267631 4292,4294c4292,4294 < alpha 226.50065194 285.4532596 < beta 1.13125578 1.2477285 < gamma 0.05443818 0.0862269 --- > alpha 226.50064553 285.45324094 > beta 1.13125578 1.24772849 > gamma 0.05443818 0.08622691 ** running tests for arch 'x64' OK Running 'allexercises.R' Comparing 'allexercises.Rout' to 'allexercises.Rout.save' ...26c26 < NA's :5 NA's :11 NA's :5 NA's :119 NA's :66 --- > NA's : 5.000 NA's :11.000 NA's :5 NA's :119.0 NA's :66.000 724c724 < 60-64:4 Hist.ctr. :6 Median :104.0 Median : 169261 --- > 60-64:4 Hist.ctr. :6 Median :104.0 Median : 169260 2164c2164 < alpha 180.77123 1.93392 93.474 < 2e-16 *** --- > alpha 180.77122 1.93392 93.474 < 2e-16 *** 2176c2176 < Achieved convergence tolerance: 1.743e-06 --- > Achieved convergence tolerance: 2.166e-06 Running 'allscripts.R' Comparing 'allscripts.Rout' to 'allscripts.Rout.save' ...486c486 < [1] 171 --- > [1] 170 518c518 < [1] "d:/temp/RtmpEFEcBN/RLIBS_105863b43483/ISwR/rawdata/thuesen.txt" --- > [1] "/Users/pd/BIOSTAT/books/ISWR-2nd-ed/ISwR.Rcheck/ISwR/rawdata/thuesen.txt" 604c604 < 25.0 202.2 313.5 340.2 462.8 915.0 321 --- > 25.0 202.2 313.5 340.2 462.8 915.0 321.0 606,621c606,621 < age menarche sex igf1 < Min. : 0.170 Min. :1.000 Min. :1.000 Min. : 25.0 < 1st Qu.: 9.053 1st Qu.:1.000 1st Qu.:1.000 1st Qu.:202.2 < Median :12.560 Median :1.000 Median :2.000 Median :313.5 < Mean :15.095 Mean :1.476 Mean :1.534 Mean :340.2 < 3rd Qu.:16.855 3rd Qu.:2.000 3rd Qu.:2.000 3rd Qu.:462.8 < Max. :83.000 Max. :2.000 Max. :2.000 Max. :915.0 < NA's :5 NA's :635 NA's :5 NA's :321 < tanner testvol < Min. :1.00 Min. : 1.000 < 1st Qu.:1.00 1st Qu.: 1.000 < Median :2.00 Median : 3.000 < Mean :2.64 Mean : 7.896 < 3rd Qu.:5.00 3rd Qu.:15.000 < Max. :5.00 Max. :30.000 < NA's :240 NA's :859 --- > age menarche sex > Min. : 0.170 Min. : 1.000 Min. :1.000 > 1st Qu.: 9.053 1st Qu.: 1.000 1st Qu.:1.000 > Median :12.560 Median : 1.000 Median :2.000 > Mean :15.095 Mean : 1.476 Mean :1.534 > 3rd Qu.:16.855 3rd Qu.: 2.000 3rd Qu.:2.000 > Max. :83.000 Max. : 2.000 Max. :2.000 > NA's : 5.000 NA's :635.000 NA's :5.000 > igf1 tanner testvol > Min. : 25.0 Min. : 1.00 Min. : 1.000 > 1st Qu.:202.2 1st Qu.: 1.00 1st Qu.: 1.000 > Median :313.5 Median : 2.00 Median : 3.000 > Mean :340.2 Mean : 2.64 Mean : 7.896 > 3rd Qu.:462.8 3rd Qu.: 5.00 3rd Qu.: 15.000 > Max. :915.0 Max. : 5.00 Max. : 30.000 > NA's :321.0 NA's :240.00 NA's :859.000 636c636 < NA's :5 NA's :321 --- > NA's : 5.000 NA's :321.0 644c644 < NA's :859 --- > NA's :859.000 705c705 < NA's :145 --- > NA's :145.0 713c713 < NA's :141 --- > NA's :141.000 723c723 < NA's :176 --- > NA's :176.0 1813,1814c1813,1814 < Max. NA's < "1996-02-22" "338" --- > Max. > "1996-02-22" 2842c2842 < Mean :1.373 Mean :164326 Mean :23.00 --- > Mean :1.373 Mean :164325 Mean :23.00 2851c2851 < Mean :164326 Mean :23.00 --- > Mean :164325 Mean :23.00 4171c4171 < Achieved convergence tolerance: 7.238e-09 --- > Achieved convergence tolerance: 1.199e-08 4208c4208 < Achieved convergence tolerance: 5.256e-06 --- > Achieved convergence tolerance: 5.27e-06 4233c4233 < Achieved convergence tolerance: 2.764e-06 --- > Achieved convergence tolerance: 2.948e-06 4278c4278 < Achieved convergence tolerance: 5.446e-06 --- > Achieved convergence tolerance: 5.472e-06 4287c4287 < alpha 233.5007561 294.76267623 --- > alpha 233.5007561 294.76267631 4292,4294c4292,4294 < alpha 226.50064250 285.45323176 < beta 1.13125577 1.24772847 < gamma 0.05443819 0.08622691 --- > alpha 226.50064553 285.45324094 > beta 1.13125578 1.24772849 > gamma 0.05443818 0.08622691 * checking PDF version of manual ... OK