* using log directory 'd:/Rcompile/CRANpkg/local/2.13/h5r.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'h5r/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'h5r' version '1.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'h5r' can be installed ... ERROR
Installation failed.
The installation logfile:
* installing *source* package 'h5r' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs

*** arch - i386
make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/2.13/h5r/src-i386'
gcc -I"d:/Rcompile/recent/R-2.13.2/include" -Id:/Rcompile/CRANpkg/extralibs/hdf5-support/include -D_HDF5USEDLL_    -I"d:/Rcompile/CRANpkg/extralibs/local/include"     -O3 -Wall  -std=gnu99 -c h5_debug.c -o h5_debug.o
gcc -I"d:/Rcompile/recent/R-2.13.2/include" -Id:/Rcompile/CRANpkg/extralibs/hdf5-support/include -D_HDF5USEDLL_    -I"d:/Rcompile/CRANpkg/extralibs/local/include"     -O3 -Wall  -std=gnu99 -c h5_wrap.c -o h5_wrap.o
h5_wrap.c: In function 'h5R_get_group':
h5_wrap.c:81:5: warning: implicit declaration of function 'H5Gopen2'
h5_wrap.c: In function 'h5R_create_group':
h5_wrap.c:85:5: warning: implicit declaration of function 'H5Gcreate2'
h5_wrap.c: In function 'h5R_get_dataset':
h5_wrap.c:89:5: warning: implicit declaration of function 'H5Dopen2'
h5_wrap.c: In function 'h5R_get_attr':
h5_wrap.c:93:5: warning: implicit declaration of function 'H5Aopen'
h5_wrap.c: In function 'h5R_create_dataset':
h5_wrap.c:333:5: warning: implicit declaration of function 'H5Dcreate2'
h5_wrap.c: In function 'h5R_read_points':
h5_wrap.c:529:5: warning: passing argument 4 of 'H5Sselect_elements' from incompatible pointer type
d:/Rcompile/CRANpkg/extralibs/hdf5-support/include/H5Spublic.h:114:15: note: expected 'const hsize_t **' but argument is of type 'hsize_t *'
h5_wrap.c: In function 'h5R_delete_object':
h5_wrap.c:581:5: warning: implicit declaration of function 'H5Ldelete'
h5_wrap.c: In function 'h5R_create_attribute':
h5_wrap.c:618:5: warning: implicit declaration of function 'H5Acreate2'
h5_wrap.c: In function 'h5R_attribute_exists':
h5_wrap.c:697:5: warning: implicit declaration of function 'H5Aexists'
h5_wrap.c: In function 'h5R_dataset_exists':
h5_wrap.c:706:5: warning: implicit declaration of function 'H5Lexists'
h5_wrap.c: At top level:
h5_wrap.c:721:62: warning: type defaults to 'int' in declaration of 'H5O_info_t'
h5_wrap.c:721:73: error: expected ';', ',' or ')' before '*' token
h5_wrap.c:729:64: warning: type defaults to 'int' in declaration of 'H5O_info_t'
h5_wrap.c:729:75: error: expected ';', ',' or ')' before '*' token
h5_wrap.c:737:73: warning: type defaults to 'int' in declaration of 'H5O_info_t'
h5_wrap.c:737:84: error: expected ';', ',' or ')' before '*' token
h5_wrap.c: In function 'h5R_list_contents':
h5_wrap.c:759:5: warning: implicit declaration of function 'H5Ovisit'
h5_wrap.c:759:28: error: 'H5_INDEX_NAME' undeclared (first use in this function)
h5_wrap.c:759:28: note: each undeclared identifier is reported only once for each function it appears in
h5_wrap.c:759:43: error: 'H5_ITER_NATIVE' undeclared (first use in this function)
h5_wrap.c:759:59: error: '_h5R_count_func' undeclared (first use in this function)
h5_wrap.c:764:59: error: '_h5R_capture_name_and_type' undeclared (first use in this function)
h5_wrap.c: In function 'h5R_list_attributes':
h5_wrap.c:777:5: warning: implicit declaration of function 'H5Aiterate2'
h5_wrap.c:777:30: error: 'H5_INDEX_NAME' undeclared (first use in this function)
h5_wrap.c:777:45: error: 'H5_ITER_NATIVE' undeclared (first use in this function)
h5_wrap.c:777:66: error: 'H5A_operator2_t' undeclared (first use in this function)
h5_wrap.c:777:83: error: expected ')' before '_h5R_count_func'
h5_wrap.c:785:83: error: expected ')' before '_h5R_capture_name'
h5_wrap.c: At top level:
h5_wrap.c:793:63: warning: type defaults to 'int' in declaration of 'H5O_info_t'
h5_wrap.c:793:74: error: expected ';', ',' or ')' before '*' token
make[1]: *** [h5_wrap.o] Error 1
make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/2.13/h5r/src-i386'
ERROR: compilation failed for package 'h5r'
* removing 'd:/Rcompile/CRANpkg/lib/2.13/h5r'