* using log directory 'd:/Rcompile/CRANpkg/local/2.13/caMassClass.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'caMassClass/DESCRIPTION' ... OK
* this is package 'caMassClass' version '1.9'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'caMassClass' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.0Mb
  sub-directories of 1Mb or more:
    Test   7.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Assignments in \usage in documentation object 'msc.biomarkers.read.csv & msc.biomarkers.write.csv':
  X = msc.biomarkers.read.csv(fname, mzXML.record = FALSE)

Assignments in \usage in documentation object 'msc.peaks.read.csv & msc.peaks.write.csv':
  X = msc.peaks.read.csv(fname, mzXML.record = FALSE)

Assignments in \usage in documentation object 'read.mzXML & write.mzXML':
  mzXML = new.mzXML()
  mzXML = read.mzXML(filename)

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
  'd:/Rcompile/CRANpkg/local/2.13/caMassClass.Rcheck/00check.log'
for details