* checking for working latex ... OK
* using log directory 'd:/Rcompile/CRANpkg/check/1.8/SparseLogReg.Rcheck'
* checking for file 'SparseLogReg/DESCRIPTION' ... OK
* checking if this is a source package ... OK



---------- Making package SparseLogReg ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making FindCounts.d from FindCounts.c
making FindGenes.d from FindGenes.c
making logreg.d from logreg.c
making nrutil.d from nrutil.c
making ran1.d from ran1.c
making sort.d from sort.c
gcc   -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2   -c FindCounts.c -o FindCounts.o
FindCounts.c:19: warning: return type defaults to `int'
FindCounts.c: In function `findcounts':
FindCounts.c:37: warning: unused variable `mtrg'
FindCounts.c:38: warning: unused variable `iminarg1'
FindCounts.c:38: warning: unused variable `iminarg2'
FindCounts.c:43: warning: unused variable `y'
FindCounts.c:49: warning: unused variable `error_per_fold'
FindCounts.c:279: warning: control reaches end of non-void function
gcc   -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2   -c FindGenes.c -o FindGenes.o
FindGenes.c:16: warning: return type defaults to `int'
FindGenes.c: In function `findgenes':
FindGenes.c:32: warning: unused variable `k4'
FindGenes.c:35: warning: unused variable `input_file'
FindGenes.c:35: warning: unused variable `out_file'
FindGenes.c:35: warning: unused variable `features_file'
FindGenes.c:36: warning: unused variable `iminarg1'
FindGenes.c:36: warning: unused variable `iminarg2'
FindGenes.c:349: warning: control reaches end of non-void function
FindGenes.c:33: warning: `minfeatCount' might be used uninitialized in this function
FindGenes.c:39: warning: `minex_per_fold' might be used uninitialized in this function
FindGenes.c:43: warning: `FinalGamma' might be used uninitialized in this function
gcc   -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2   -c logreg.c -o logreg.o
logreg.c: In function `FindMaxViolator':
logreg.c:83: warning: unused variable `i'
logreg.c:85: warning: unused variable `dminarg1'
logreg.c:85: warning: unused variable `dminarg2'
logreg.c: In function `OptimizeForAlpha':
logreg.c:134: warning: unused variable `temp'
logreg.c:134: warning: unused variable `slope_0'
logreg.c:134: warning: `alpha_new' might be used uninitialized in this function
logreg.c:134: warning: `slope_v' might be used uninitialized in this function
logreg.c: In function `SparseLOGREGTrain':
logreg.c:285: warning: unused variable `count'
logreg.c:285: warning: unused variable `flag'
logreg.c:285: warning: unused variable `i'
logreg.c:285: warning: unused variable `j'
logreg.c:285: warning: unused variable `k'
logreg.c:285: warning: unused variable `p_maxviol'
logreg.c:286: warning: unused variable `primal'
logreg.c:286: warning: unused variable `temp'
logreg.c:286: warning: unused variable `MaxViol'
logreg.c:286: warning: unused variable `Delta_v'
logreg.c:287: warning: unused variable `dmaxarg1'
logreg.c:287: warning: unused variable `dmaxarg2'
logreg.c:287: warning: unused variable `dminarg1'
logreg.c:287: warning: unused variable `dminarg2'
gcc   -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2   -c nrutil.c -o nrutil.o
gcc   -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2   -c ran1.c -o ran1.o
gcc   -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2   -c sort.c -o sort.o
ar cr SparseLogReg.a *.o
ranlib SparseLogReg.a
windres --include-dir d:/Rcompile/recent/R-1.8.1/src/include  -i SparseLogReg_res.rc -o SparseLogReg_res.o
gcc  --shared -s  -o SparseLogReg.dll SparseLogReg.def SparseLogReg.a SparseLogReg_res.o  -Ld:/Rcompile/recent/R-1.8.1/src/gnuwin32  -lg2c -lR 
  ... DLL made
  installing DLL
  installing R files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'SparseLogReg'
     Formats: text html latex example 
  runSparseLogreg                   text    html    latex   example
 >>> Building/Updating help pages for package 'SparseLogReg'
     Formats: chm 
  runSparseLogreg                                                   chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\Rcompile\CRANpkg\check\1.8\SparseLogReg\chm\SparseLogReg.chm





Compile time: 0 minutes, 1 second

2	Topics

2	Local links

0	Internet links

1	Graphic





Created d:\Rcompile\CRANpkg\check\1.8\SparseLogReg\chm\SparseLogReg.chm, 21,731 bytes

Compression increased file by 8,523 bytes.

  adding MD5 sums

installing R.css in d:/Rcompile/CRANpkg/check/1.8/SparseLogReg.Rcheck

* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking package dependencies ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking for replacement functions with final arg not named 'value' ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C sources/headers ... OK
* creating SparseLogReg-Ex.R ... OK
* checking examples ... OK
* creating SparseLogReg-manual.tex ... OK
* checking SparseLogReg-manual.tex ... OK