* checking for working latex ... OK * using log directory 'd:/Rcompile/CRANpkg/check/1.8/GeneTS.Rcheck' * checking for file 'GeneTS/DESCRIPTION' ... OK * checking if this is a source package ... OK ---------- Making package GeneTS ------------ adding build stamp to DESCRIPTION installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'GeneTS' Formats: text html latex example GeneTS-internal text html latex avpg text html latex example missing link(s): spectrum bagging text html latex example caulobacter text html latex example cor.fit.mixture text html latex example cor0.estimate.kappa text html latex example missing link(s): hubers cor0.test text html latex example dcor0 text html latex example dominant.freqs text html latex example missing link(s): spectrum fdr.control text html latex example fdr.estimate.eta0 text html latex example fisher.g.test text html latex example ggm.estimate.pcor text html latex example ggm.plot.graph text html latex example ggm.simulate.data text html latex example ggm.simulate.pcor text html latex example ggm.test.edges text html latex example is.constant text html latex example kappa2N text html latex example mat.convert text html latex example mat.util text html latex example pcor text html latex example periodogram text html latex example missing link(s): spectrum spectrum spectrum spectrum spectrum pseudoinverse text html latex example missing link(s): ginv robust.boot text html latex example missing link(s): boot boot standardize.cov text html latex example z.transform text html latex example >>> Building/Updating help pages for package 'GeneTS' Formats: chm GeneTS-internal chm avpg chm bagging chm caulobacter chm cor.fit.mixture chm cor0.estimate.kappa chm cor0.test chm dcor0 chm dominant.freqs chm fdr.control chm fdr.estimate.eta0 chm fisher.g.test chm ggm.estimate.pcor chm ggm.plot.graph chm ggm.simulate.data chm ggm.simulate.pcor chm ggm.test.edges chm is.constant chm kappa2N chm mat.convert chm mat.util chm pcor chm periodogram chm pseudoinverse chm robust.boot chm standardize.cov chm z.transform chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\Rcompile\CRANpkg\check\1.8\GeneTS\chm\GeneTS.chm Compile time: 0 minutes, 2 seconds 28 Topics 150 Local links 49 Internet links 1 Graphic Created d:\Rcompile\CRANpkg\check\1.8\GeneTS\chm\GeneTS.chm, 64,965 bytes Compression decreased file by 60,193 bytes. adding MD5 sums installing R.css in d:/Rcompile/CRANpkg/check/1.8/GeneTS.Rcheck * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... WARNING Warning messages: 1: package XML was built under R version 1.9.0 2: There is no package called 'Rgraphviz' in: library(package, character.only = TRUE, logical = TRUE, warn.conflicts = warn.conflicts, * checking for replacement functions with final arg not named 'value' ... WARNING Warning messages: 1: package XML was built under R version 1.9.0 2: There is no package called 'Rgraphviz' in: library(package, character.only = TRUE, logical = TRUE, warn.conflicts = warn.conflicts, * checking Rd files ... OK * checking for missing documentation entries ... WARNING Warning messages: 1: package XML was built under R version 1.9.0 2: There is no package called 'Rgraphviz' in: library(package, character.only = TRUE, logical = TRUE, warn.conflicts = warn.conflicts, All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... WARNING Warning messages: 1: package XML was built under R version 1.9.0 2: There is no package called 'Rgraphviz' in: library(package, character.only = TRUE, logical = TRUE, warn.conflicts = warn.conflicts, Warning messages: 1: package XML was built under R version 1.9.0 2: There is no package called 'Rgraphviz' in: library(package, character.only = TRUE, logical = TRUE, warn.conflicts = warn.conflicts, Warning messages: 1: package XML was built under R version 1.9.0 2: There is no package called 'Rgraphviz' in: library(package, character.only = TRUE, logical = TRUE, warn.conflicts = warn.conflicts, * checking Rd \usage sections ... OK * creating GeneTS-Ex.R ... OK * checking examples ... OK * creating GeneTS-manual.tex ... OK * checking GeneTS-manual.tex ... OK WARNING: There were 4 warnings, see d:/Rcompile/CRANpkg/check/1.8/GeneTS.Rcheck/00check.log for details