* checking for working latex ... OK * using log directory 'd:/Rcompile/CRANpkg/check/1.8/AnalyzeFMRI.Rcheck' * checking for file 'AnalyzeFMRI/DESCRIPTION' ... OK * checking if this is a source package ... OK ---------- Making package AnalyzeFMRI ------------ adding build stamp to DESCRIPTION making DLL ... making analyzeFMRI.d from analyzeFMRI.c making sim.3d.GRF.d from sim.3d.GRF.c making spatial.d from spatial.c making spatial.est.d from spatial.est.c making spatial.filters.non.linear.d from spatial.filters.non.linear.c making spatial.mixture.d from spatial.mixture.c gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c analyzeFMRI.c -o analyzeFMRI.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c sim.3d.GRF.c -o sim.3d.GRF.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c spatial.c -o spatial.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c spatial.est.c -o spatial.est.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c spatial.filters.non.linear.c -o spatial.filters.non.linear.o gcc -Id:/Rcompile/recent/R-1.8.1/src/include -Wall -O2 -c spatial.mixture.c -o spatial.mixture.o g77 -O2 -Wall -c lsame.f -o lsame.o g77 -O2 -Wall -c sblas.f -o sblas.o sblas.f: In subroutine `sgemv': sblas.f:127: warning: `kx' might be used uninitialized in this function sblas.f:127: warning: `ky' might be used uninitialized in this function sblas.f: In subroutine `sgbmv': sblas.f:399: warning: `kx' might be used uninitialized in this function sblas.f:399: warning: `ky' might be used uninitialized in this function sblas.f: In subroutine `ssymv': sblas.f:645: warning: `kx' might be used uninitialized in this function sblas.f:645: warning: `ky' might be used uninitialized in this function sblas.f: In subroutine `ssbmv': sblas.f:895: warning: `kx' might be used uninitialized in this function sblas.f:895: warning: `ky' might be used uninitialized in this function sblas.f: In subroutine `sspmv': sblas.f:1143: warning: `kx' might be used uninitialized in this function sblas.f:1143: warning: `ky' might be used uninitialized in this function sblas.f: In subroutine `strmv': sblas.f:1391: warning: `kx' might be used uninitialized in this function sblas.f: In subroutine `stbmv': sblas.f:1653: warning: `kx' might be used uninitialized in this function sblas.f: In subroutine `stpmv': sblas.f:1917: warning: `kx' might be used uninitialized in this function sblas.f: In subroutine `strsv': sblas.f:2195: warning: `kx' might be used uninitialized in this function sblas.f: In subroutine `stbsv': sblas.f:2462: warning: `kx' might be used uninitialized in this function sblas.f: In subroutine `stpsv': sblas.f:2727: warning: `kx' might be used uninitialized in this function sblas.f: In subroutine `ssyr': sblas.f:3119: warning: `kx' might be used uninitialized in this function sblas.f: In subroutine `sspr': sblas.f:3293: warning: `kx' might be used uninitialized in this function sblas.f: In subroutine `ssyr2': sblas.f:3496: warning: `kx' might be used uninitialized in this function sblas.f:3496: warning: `ky' might be used uninitialized in this function sblas.f: In subroutine `sspr2': sblas.f:3705: warning: `kx' might be used uninitialized in this function sblas.f:3705: warning: `ky' might be used uninitialized in this function g77 -O2 -Wall -c slapack.f -o slapack.o slapack.f: In subroutine `sbdsdc': slapack.f:139: warning: `difl' might be used uninitialized in this function slapack.f:139: warning: `difr' might be used uninitialized in this function slapack.f:139: warning: `givcol' might be used uninitialized in this function slapack.f:139: warning: `givnum' might be used uninitialized in this function slapack.f:139: warning: `givptr' might be used uninitialized in this function slapack.f:139: warning: `ic' might be used uninitialized in this function slapack.f:140: warning: `is' might be used uninitialized in this function slapack.f:140: warning: `iu' might be used uninitialized in this function slapack.f:140: warning: `ivt' might be used uninitialized in this function slapack.f:140: warning: `k' might be used uninitialized in this function slapack.f:141: warning: `perm' might be used uninitialized in this function slapack.f:141: warning: `poles' might be used uninitialized in this function slapack.f:142: warning: `z' might be used uninitialized in this function slapack.f: In subroutine `sgesdd': slapack.f:2456: warning: `bdspac' might be used uninitialized in this function slapack.f:2456: warning: `il' might be used uninitialized in this function slapack.f:2457: warning: `ir' might be used uninitialized in this function slapack.f: In subroutine `slaed6': slapack.f:4112: warning: `sclinv' might be used uninitialized in this function slapack.f: In function `slamch': slapack.f:4372: warning: `rmach' might be used uninitialized in this function slapack.f: In subroutine `slamc5': slapack.f:5070: warning: `oldy' might be used uninitialized in this function slapack.f: In function `slange': slapack.f:5352: warning: `value' might be used uninitialized in this function slapack.f: In function `slanst': slapack.f:5489: warning: `anorm' might be used uninitialized in this function slapack.f: In subroutine `slasd2': slapack.f:7838: warning: `jprev' might be used uninitialized in this function slapack.f: In subroutine `slasd7': slapack.f:10067: warning: `jprev' might be used uninitialized in this function slapack.f: In subroutine `slasd8': slapack.f:10441: warning: `difrj' might be used uninitialized in this function slapack.f: In subroutine `slasq4': slapack.f:12482: warning: `s' might be used uninitialized in this function slapack.f: In subroutine `slasv2': slapack.f:13855: warning: `clt' might be used uninitialized in this function slapack.f:13855: warning: `crt' might be used uninitialized in this function slapack.f:13856: warning: `slt' might be used uninitialized in this function slapack.f:13856: warning: `srt' might be used uninitialized in this function slapack.f:13856: warning: `tsign' might be used uninitialized in this function slapack.f: In subroutine `sorglq': slapack.f:14599: warning: `ki' might be used uninitialized in this function slapack.f: In subroutine `sorgqr': slapack.f:14816: warning: `ki' might be used uninitialized in this function slapack.f: In subroutine `sorm2r': slapack.f:15054: warning: `ic' might be used uninitialized in this function slapack.f:15054: warning: `jc' might be used uninitialized in this function slapack.f: In subroutine `sorml2': slapack.f:15535: warning: `ic' might be used uninitialized in this function slapack.f:15535: warning: `jc' might be used uninitialized in this function slapack.f: In subroutine `sormlq': slapack.f:15743: warning: `ic' might be used uninitialized in this function slapack.f:15743: warning: `jc' might be used uninitialized in this function slapack.f: In subroutine `sormqr': slapack.f:16011: warning: `ic' might be used uninitialized in this function slapack.f:16011: warning: `jc' might be used uninitialized in this function g77 -O2 -Wall -c spatial.filters.linear.f -o spatial.filters.linear.o ar cr AnalyzeFMRI.a *.o ranlib AnalyzeFMRI.a windres --include-dir d:/Rcompile/recent/R-1.8.1/src/include -i AnalyzeFMRI_res.rc -o AnalyzeFMRI_res.o gcc --shared -s -o AnalyzeFMRI.dll AnalyzeFMRI.def AnalyzeFMRI.a AnalyzeFMRI_res.o -Ld:/Rcompile/recent/R-1.8.1/src/gnuwin32 -lg2c -lR ... DLL made installing DLL installing R files installing inst files installing man source files installing indices installing help >>> Building/Updating help pages for package 'AnalyzeFMRI' Formats: text html latex example EC.3D text html latex example GaussSmoothArray text html latex example GaussSmoothKernel text html latex example N2G.Class.Probability text html latex N2G.Density text html latex N2G.Fit text html latex N2G.Inverse text html latex N2G.Likelihood.Ratio text html latex N2G.Likelihood text html latex N2G text html latex example N2G.Region text html latex N2G.Spatial.Mixture text html latex example N2G.Transform text html latex NonLinearSmoothArray text html latex example Sim.3D.GRF text html latex example Sim.3D.GammaRF text html latex example SmoothEst text html latex example Threshold.Bonferroni text html latex example Threshold.FDR text html latex example Threshold.RF text html latex example cluster.threshold text html latex example cov.est text html latex example f.analyze.file.summary text html latex example f.analyzeIO.gui text html latex f.basic.hdr.list.create text html latex example f.ica.fmri text html latex f.ica.fmri.gui text html latex f.plot.ica.fmri text html latex f.plot.ica.fmri.jpg text html latex f.read.analyze.header text html latex example f.read.analyze.slice text html latex example f.read.analyze.slice.at.all.timep text html latex example f.read.analyze.tpt text html latex example f.read.analyze.ts text html latex example f.read.analyze.volume text html latex example f.spectral.summary text html latex f.write.analyze text html latex example f.write.array.to.img.2bytes text html latex f.write.array.to.img.8bit text html latex f.write.array.to.img.float text html latex f.write.list.to.hdr text html latex example model.2.cov.func text html latex model.2.est.gamma text html latex >>> Building/Updating help pages for package 'AnalyzeFMRI' Formats: chm EC.3D chm GaussSmoothArray chm GaussSmoothKernel chm N2G.Class.Probability chm N2G.Density chm N2G.Fit chm N2G.Inverse chm N2G.Likelihood.Ratio chm N2G.Likelihood chm N2G chm N2G.Region chm N2G.Spatial.Mixture chm N2G.Transform chm NonLinearSmoothArray chm Sim.3D.GRF chm Sim.3D.GammaRF chm SmoothEst chm Threshold.Bonferroni chm Threshold.FDR chm Threshold.RF chm cluster.threshold chm cov.est chm f.analyze.file.summary chm f.analyzeIO.gui chm f.basic.hdr.list.create chm f.ica.fmri chm f.ica.fmri.gui chm f.plot.ica.fmri chm f.plot.ica.fmri.jpg chm f.read.analyze.header chm f.read.analyze.slice chm f.read.analyze.slice.at.all.timep chm f.read.analyze.tpt chm f.read.analyze.ts chm f.read.analyze.volume chm f.spectral.summary chm f.write.analyze chm f.write.array.to.img.2bytes chm f.write.array.to.img.8bit chm f.write.array.to.img.float chm f.write.list.to.hdr chm model.2.cov.func chm model.2.est.gamma chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\Rcompile\CRANpkg\check\1.8\AnalyzeFMRI\chm\AnalyzeFMRI.chm Compile time: 0 minutes, 2 seconds 44 Topics 228 Local links 0 Internet links 1 Graphic Created d:\Rcompile\CRANpkg\check\1.8\AnalyzeFMRI\chm\AnalyzeFMRI.chm, 59,451 bytes Compression decreased file by 61,002 bytes. adding MD5 sums installing R.css in d:/Rcompile/CRANpkg/check/1.8/AnalyzeFMRI.Rcheck * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking for replacement functions with final arg not named 'value' ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C sources/headers ... OK * creating AnalyzeFMRI-Ex.R ... OK * checking examples ... OK * checking tests ... make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/check/1.8/AnalyzeFMRI.Rcheck/tests' Running 'test.R' Comparing 'test.Rout' to 'test.Rout.save' ...OK make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/check/1.8/AnalyzeFMRI.Rcheck/tests' OK * creating AnalyzeFMRI-manual.tex ... OK * checking AnalyzeFMRI-manual.tex ... OK